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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056859 ID=TCONS_00056859|Name=TCONS_00056859|organism=Clytia hemisphaerica|type=transcript|length=5248bpRun BLAST on NCBI protein sequence of TCONS_00056859-protein >TCONS_00056859-protein ID=TCONS_00056859-protein|Name=TCONS_00056859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1005bp VNKYSKRNQKFQIMDSFSDDEGPPPMETKYAARISENDKDKLLASGDERERun BLAST on NCBI transcript from alignment at scaffold_284:352800..389905+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056859 ID=TCONS_00056859|Name=TCONS_00056859|organism=Clytia hemisphaerica|type=transcript|length=37106bp|location=Sequence derived from alignment at scaffold_284:352800..389905+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_284:352800..389905+ >TCONS_00056859 ID=TCONS_00056859|Name=TCONS_00056859|organism=Clytia hemisphaerica|type=CDS|length=42252bp|location=Sequence derived from alignment at scaffold_284:352800..389905+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056859 vs. Swiss-Prot (Human)
Match: APBA2 (Amyloid-beta A4 precursor protein-binding family A member 2 OS=Homo sapiens GN=APBA2 PE=1 SV=3) HSP 1 Score: 348.206 bits (892), Expect = 2.639e-102 Identity = 191/404 (47.28%), Postives = 274/404 (67.82%), Query Frame = 2
Query: 1826 SVEGPHTENDLNSGVRYKMKYLGSCQITTQHPVTKETRMQQAQDAYKRIKN-------EGXXXXXXXXXVSTNVDMFISLERIKIINKDTKFEDVMMDHALRTVCFICDMGKILVLMARRLTSDGVTDFNIEQGQPITLGNITGGREKKTSKNICHVFEAEIEASQIAKAIGQAFNMAYRQFLTTNGISHDHVEEAEYGNVLESQKLVGQDLDRLTDNSQARDIVVQKRRGDPLGIMLLESGWGSMLPTVFIAHLANYSAAARSQRLTVGDHILTCNGASFVGLPLSECNEILRNTRSTERVIFXXXXXXXXXXXXXXXXXTKYQLGFSVQNGTICSLLRGGIAERGGVRVGHRIIEINGDSVVAKSHQYIVDILANTIGSISMKTMPVAMYRLMVGDDQPLHV 3016
+V GP DL G+ + YLGS Q+ ++ +K RM QAQ+A R+K + + E D T VD+FIS +RIK++N DT+ + MMDHALRT+ +I D+G I+VLMARR + IE T G G KK K ICHVFE+E +A IA++IGQAF++AY++FL NGI+ + + + EY +++ +Q++ DL +++ +++ ++K +G+ LG++++ESGWGS+LPTV +A++ N AARS +L++GD I++ NG S VGLPL+ C I++ ++ +V +VSCPPV V++ RPD KYQLGFSVQNG ICSL+RGGIAERGGVRVGHRIIEING SVVA +H+ IV L+N++G I MKTMP AM+RL+ G + PL++
Sbjct: 356 AVPGPCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQTLTEVDLFISTQRIKVLNADTQ--ETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIE----TTPGAQEG---KKQYKMICHVFESE-DAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQETPLYI 749 The following BLAST results are available for this feature:
BLAST of TCONS_00056859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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