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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056874 ID=TCONS_00056874|Name=TCONS_00056874|organism=Clytia hemisphaerica|type=transcript|length=1610bpRun BLAST on NCBI protein sequence of TCONS_00056874-protein >TCONS_00056874-protein ID=TCONS_00056874-protein|Name=TCONS_00056874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp QPTTERKAMRVRGIHFSQLVVASLVGIAETTAMESSKIFAKNNIKPPVEGRun BLAST on NCBI transcript from alignment at scaffold_284:808938..867724+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056874 ID=TCONS_00056874|Name=TCONS_00056874|organism=Clytia hemisphaerica|type=transcript|length=58787bp|location=Sequence derived from alignment at scaffold_284:808938..867724+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_284:808938..867724+ >TCONS_00056874 ID=TCONS_00056874|Name=TCONS_00056874|organism=Clytia hemisphaerica|type=CDS|length=18954bp|location=Sequence derived from alignment at scaffold_284:808938..867724+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056874 vs. Swiss-Prot (Human)
Match: TRM13 (tRNA:::m(4)X modification enzyme TRM13 homolog OS=Homo sapiens GN=TRMT13 PE=1 SV=2) HSP 1 Score: 266.159 bits (679), Expect = 1.370e-81 Identity = 161/468 (34.40%), Postives = 262/468 (55.98%), Query Frame = 1
Query: 139 PVEGRCGFFVKRKQRYCKMKPTKGNQFCAEHAQFDKEQDEGEKRKRIPCPLDPKHSVFEDKLSSHMKKCNATKKTNLPFFDKNINIGINHYIRSEKEKLRLYEVPIDELKNLIEKLRDIHKKVINLISQSENTTIHQLLSNEIETQKDCGQNVKKHLVQQGSLIQILDDNEFFRHDVNVIEFGAGRGALSHWVQKAMSSKEGSQQYFLIDRQHNRNKLDCYHKGEDQGPNFQRXXXXXXXXXXXKVDALVKDNGEVSNILAIGKHLCGGATDLSLRCLLNDQNNKSNSSGEEPSEKRSKTTNKFRE------------------NLHGILFALCCYHRCTWDTYVGLDFMQKHDVTPTQFHFMTKMATWSTCGFERRQHEDHIA-----DDESDETNTLNEGKIHHKLK----------FSIAEQEEIGHMCKLLIDYGRIQYIESRGFKPHLVKYISRDVTPENIAL 1443
P EGRCG++V++K+R+C+M G +FC EHA +E+D RKRI CPLDPKH+V+ED+L+ H+KKCN+ +K F+ ++IN G+ ++ + + + ++L+ LI+KLR + + + + ++ H L + + K+ G + KHL QQ S++ +++ + +EFGAG+G LSHWV A+ E + L+++ R K+D H+ ++ F+RL IDI +L LNK+ L + E ++ IGKHLCG ATDL+LRCL+ EEP KR K +E + GI+ ALCC+HRC W YVG ++ + + +FH+ +M++W+TCG + E + D+++D++ ++G +++ S+ E+++IGH+CKLLID GRIQY++ +GF P L Y V+ EN+ L
Sbjct: 14 PAEGRCGYYVEKKKRFCRMVVAAGKRFCGEHAGAAEEED---ARKRILCPLDPKHTVYEDQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLEKLIKKLRKASEGLNSTL--KDHIMSHPALHDALNDPKN-GDSATKHLKQQASILGNIENLKLLGPRRCFVEFGAGKGKLSHWVDIALKDAE-KVHFILVEKVTTRFKVDGKHRKKNS--VFERLQIDIQHLCLNKIPVLRE---EKLPVVGIGKHLCGMATDLALRCLVETYAASFEERNEEPLAKRIKNDKTEKEIYTLAKEGNEKNVPEKWNPVAGIVIALCCHHRCDWRHYVGKEYFRALGLGAVEFHYFQRMSSWATCGMRKTSLETSNSTTKRQDNQNDDSEEHDDGG--YRITDDGADCLPGLLSVEEKKKIGHLCKLLIDQGRIQYLQQKGFSPALQYYTDPLVSLENVLL 467 The following BLAST results are available for this feature:
BLAST of TCONS_00056874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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