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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056907 ID=TCONS_00056907|Name=TCONS_00056907|organism=Clytia hemisphaerica|type=transcript|length=669bp
cttttttatagaTACGTGAGAACCTCAGAAGTGAACTAGGGATGACAGAC
CCATTAGAGCGAACCAAGCGAGCAGTACCAGCAAAACACGTTGCATTTGT
TACTTCAAAGATAAGAATGTCTAAATTTATAACAGACAACGCTTCAAAAG
ACAAGCCGACCAGCATGGATAACGCAGTTTTGGATGAAGATTTAATCTAT
TTCCAAGAAACCGCAGAATTAGCAAAGAAGACTTCAATGGGACGAATAAT
TAACAATAGCAAAGATGAAACTGAACATATCATTAGGGTGTGGATGACAC
CAAAGGAAAGGGAAGATGCAACGAAAGCCTCAGCGTTAACTAAGCCTGAA
CTTGTTGCACGGATTGAGAAGTTACTACCGAAATACCCAAGATTTGAACA
AGAATACAAATCAGACGTCAAGGGTAAAATCAAGGATTTACATGTAGACT
TCTTATANCAAGATTTGAACAAGAATACAAATCAGACGTCAAGGGTAAAA
TCAAGGATTTACATGTAGACTTCTTCCTAAAGCTTCAAGATTGTGATTGG
GCTGAGTAGCTTCCCGAAAAAGACTTGGGCGAATTTTTTCCTATAAACCT
GCACTTTATACATGTGACATTTTCTGTGAATAAAGAACATACCTTAGCCA
CGTATGGTTCAAGCCCATT Run BLAST on NCBI protein sequence of TCONS_00056907-protein >TCONS_00056907-protein ID=TCONS_00056907-protein|Name=TCONS_00056907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MTDPLERTKRAVPAKHVAFVTSKIRMSKFITDNASKDKPTSMDNAVLDED
LIYFQETAELAKKTSMGRIINNSKDETEHIIRVWMTPKEREDATKASALT
KPELVARIEKLLPKYPRFEQEYKSDVKGKIKDLHVDFLXQDLNKNTNQTS
RVKSRIYM Run BLAST on NCBI transcript from alignment at scaffold_284:3024..4214- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056907 ID=TCONS_00056907|Name=TCONS_00056907|organism=Clytia hemisphaerica|type=transcript|length=1191bp|location=Sequence derived from alignment at scaffold_284:3024..4214- (Clytia hemisphaerica)
CTTTTTTATAGATACGTGAGAACCTCAGAAGTGAACTAGGGATGACAGAC
CCATTAGAGCGAACCAAGCGAGCAGTACCAGCAAAACACGTTGCATTTGT
TACTTCAAAGATAAGAATGTCTAAATTTATAACAGGTAAACAATACAAGC
GCCAAAAGTTCAGACCCATAAAAGCCTGAGTTTTATACGAAACATAAATT
AAACACCTTTATATTAGAAACTCTTCAATCTTAGGTCGTCTTAAATTTGA
AAGTGTCTTTCTATATCTCTGCTGTTGGTTATTTTTAGACAGATTTTATA
GAATTGGATATTCTGTTGTTGGGTATAAACAGGAATTTAAAAAAGTCACA
AATTGCTGACACGGAAGTGTTGCGTTAAGCGATTAACGCGTACCTTATCG
GGAAAACTACGTCGGGGAAAAGTGACGAATATTTTTTCAAGACGAAAATT
TTCCACAACGAAGTTTTCCCTGATAAGGTATACCTATTACCAAAGAAATA
CTTCTATTTCTTTGCTATTATATACTTGTCTAGACAACGCTTCAAAAGAC
AAGCCGACCAGCATGGATAACGCAGTTTTGGATGAAGATTTAATCTATTT
CCAAGAAACCGCAGAATTAGCAAAGAAGACTTCAATGGGACGAATAATTA
ACAATAGCAAAGATGAAACTGAACATATCATTAGGGTGTGGATGACACCA
AAGGAAAGGGAAGATGCAACGAAAGCCTCAGCGTTAACTAAGCCGTAAGT
CATGTTTATTATTTCTTTTCAAACTGTAACTTTAACGTGTCATAAATTAC
CCAATAATCCAGTTATGTCTCTTTAAATGCCCCCTATCTGACATTTCTAT
GACATTTTCCTTTTATAGTGAACTTGTTGCACGGATTGAGAAGTTACTAC
CGAAATACCCAAGATTTGAACAAGAATACAAATCAGACGTCAAGGGTAAA
ATCAAGGATTTACATGTAGACTTCTTATANCAAGATTTGAACAAGAATAC
AAATCAGACGTCAAGGGTAAAATCAAGGATTTACATGTAGACTTCTTCCT
AAAGCTTCAAGATTGTGATTGGGCTGAGTAGCTTCCCGAAAAAGACTTGG
GCGAATTTTTTCCTATAAACCTGCACTTTATACATGTGACATTTTCTGTG
AATAAAGAACATACCTTAGCCACGTATGGTTCAAGCCCATT Coding sequence (CDS) from alignment at scaffold_284:3024..4214- >TCONS_00056907 ID=TCONS_00056907|Name=TCONS_00056907|organism=Clytia hemisphaerica|type=CDS|length=1431bp|location=Sequence derived from alignment at scaffold_284:3024..4214- (Clytia hemisphaerica)
TGAACTTGTTGCACGGATTGAGAAGTTACTACCGAAATACCCAAGATTTG
AACAAGAATACAAATCAGACGTCAAGGGTAAAATCAAGGATTTACATGTA
GACTTCTTATANCAAGATTTGAACAAGAATACAAATCAGACGTCAAGGGT
AAAATCAAGGATTTACATGTAGACAACGCTTCAAAAGACAAGCCGACCAG
CATGGATAACGCAGTTTTGGATGAAGATTTAATCTATTTCCAAGAAACCG
CAGAATTAGCAAAGAAGACTTCAATGGGACGAATAATTAACAATAGCAAA
GATGAAACTGAACATATCATTAGGGTGTGGATGACACCAAAGGAAAGGGA
AGATGCAACGAAAGCCTCAGCGTTAACTAAGCCATGACAGACCCATTAGA
GCGAACCAAGCGAGCAGTACCAGCAAAACACGTTGCATTTGTTACTTCAA
AGATAAGAATGTCTAAATTTATAACAGTGAACTTGTTGCACGGATTGAGA
AGTTACTACCGAAATACCCAAGATTTGAACAAGAATACAAATCAGACGTC
AAGGGTAAAATCAAGGATTTACATGTAGACTTCTTATANCAAGATTTGAA
CAAGAATACAAATCAGACGTCAAGGGTAAAATCAAGGATTTACATGTAGA
CAACGCTTCAAAAGACAAGCCGACCAGCATGGATAACGCAGTTTTGGATG
AAGATTTAATCTATTTCCAAGAAACCGCAGAATTAGCAAAGAAGACTTCA
ATGGGACGAATAATTAACAATAGCAAAGATGAAACTGAACATATCATTAG
GGTGTGGATGACACCAAAGGAAAGGGAAGATGCAACGAAAGCCTCAGCGT
TAACTAAGCCATGACAGACCCATTAGAGCGAACCAAGCGAGCAGTACCAG
CAAAACACGTTGCATTTGTTACTTCAAAGATAAGAATGTCTAAATTTATA
ACAGTGAACTTGTTGCACGGATTGAGAAGTTACTACCGAAATACCCAAGA
TTTGAACAAGAATACAAATCAGACGTCAAGGGTAAAATCAAGGATTTACA
TGTAGACTTCTTATANCAAGATTTGAACAAGAATACAAATCAGACGTCAA
GGGTAAAATCAAGGATTTACATGTAGACAACGCTTCAAAAGACAAGCCGA
CCAGCATGGATAACGCAGTTTTGGATGAAGATTTAATCTATTTCCAAGAA
ACCGCAGAATTAGCAAAGAAGACTTCAATGGGACGAATAATTAACAATAG
CAAAGATGAAACTGAACATATCATTAGGGTGTGGATGACACCAAAGGAAA
GGGAAGATGCAACGAAAGCCTCAGCGTTAACTAAGCCATGACAGACCCAT
TAGAGCGAACCAAGCGAGCAGTACCAGCAAAACACGTTGCATTTGTTACT
TCAAAGATAAGAATGTCTAAATTTATAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056907-exon-scaffold_284-1575043694:4080..4214 | TCONS_00056907-exon-scaffold_284-1575043694:4080..4214 | Clytia hemisphaerica | exon |
| TCONS_00056907-exon-scaffold_284-1575043694:3471..3681 | TCONS_00056907-exon-scaffold_284-1575043694:3471..3681 | Clytia hemisphaerica | exon |
| TCONS_00056907-exon-scaffold_284-1575043694:3024..3346 | TCONS_00056907-exon-scaffold_284-1575043694:3024..3346 | Clytia hemisphaerica | exon |
| TCONS_00056907-exon-scaffold_284-1510915933:4080..4214 | TCONS_00056907-exon-scaffold_284-1510915933:4080..4214 | Clytia hemisphaerica | exon |
| TCONS_00056907-exon-scaffold_284-1510915933:3471..3681 | TCONS_00056907-exon-scaffold_284-1510915933:3471..3681 | Clytia hemisphaerica | exon |
| TCONS_00056907-exon-scaffold_284-1510915933:3024..3346 | TCONS_00056907-exon-scaffold_284-1510915933:3024..3346 | Clytia hemisphaerica | exon |
| TCONS_00056907-exon-scaffold_284-1491911889:4080..4214 | TCONS_00056907-exon-scaffold_284-1491911889:4080..4214 | Clytia hemisphaerica | exon |
| TCONS_00056907-exon-scaffold_284-1491911889:3471..3681 | TCONS_00056907-exon-scaffold_284-1491911889:3471..3681 | Clytia hemisphaerica | exon |
| TCONS_00056907-exon-scaffold_284-1491911889:3024..3346 | TCONS_00056907-exon-scaffold_284-1491911889:3024..3346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:3024..4214 - |
Blast
The following BLAST results are available for this feature:
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