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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056981 ID=TCONS_00056981|Name=TCONS_00056981|organism=Clytia hemisphaerica|type=transcript|length=1899bpRun BLAST on NCBI protein sequence of TCONS_00056981-protein >TCONS_00056981-protein ID=TCONS_00056981-protein|Name=TCONS_00056981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=530bp MHSVLRRTIKPSTCRLASTRLSSSYLVNDPQYGFLKELGLEADNLGVFNGRun BLAST on NCBI transcript from alignment at scaffold_284:1358499..1377052- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056981 ID=TCONS_00056981|Name=TCONS_00056981|organism=Clytia hemisphaerica|type=transcript|length=18554bp|location=Sequence derived from alignment at scaffold_284:1358499..1377052- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_284:1358499..1377052- >TCONS_00056981 ID=TCONS_00056981|Name=TCONS_00056981|organism=Clytia hemisphaerica|type=CDS|length=27081bp|location=Sequence derived from alignment at scaffold_284:1358499..1377052- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056981 vs. Swiss-Prot (Human)
Match: AL7A1 (Alpha-aminoadipic semialdehyde dehydrogenase OS=Homo sapiens GN=ALDH7A1 PE=1 SV=5) HSP 1 Score: 728.783 bits (1880), Expect = 0.000e+0 Identity = 343/510 (67.25%), Postives = 412/510 (80.78%), Query Frame = 3
Query: 126 SSYLVNDPQYGFLKELGLEADNLGVFNGKWGGRGEWIESSSPINGQAIARVKQGDVTDYREAVEEANEAWKQWRTVTPPMRGEIVRQIGHHLREKLIPLGKLTSLEMGKINPEGIGEVQEYIDICDYAVGLSRMLPGIVIPSERPNHALFEQWNPLGLVGIITAFNFPVAVAGWNTAISLVCGNTQIWKGAPTTPLVSVAVTKLLSEVLDANNLPGSICSLVQGGADVGEAMATDKNVKLLSFTGSTKVGHNVSMKVQERFGKFLLELGGNNALIGMDDAEIDLLVPATLFAAVGTAGQRCTTLRRLILHESIYDEVVERLVKAYKQVKIGNPLEDGILCGPLHTTEAVQAYENAIHAAKEQGGTVAFGGKALG--GNYVEPTVITGIAHDSPIVHTETFVPILYVLKCDSYEQAVEWNNEVDQGLSSSIFTRDIGKVFDWMGPGGSDCGIVNINIPTSGAEIGGAFGGEKHTGGGRESGSDSWKQYMRRSTCTFNYGKELPLAQGIKFE 1649
S+ L+N PQY +LKELGL +N GV+NG WGGRGE I + P N + IARV+Q V DY E V++A EAWK W + P RGEIVRQIG LREK+ LG L SLEMGKI EG+GEVQEY+DICDYAVGLSRM+ G ++PSER HAL EQWNP+GLVGIITAFNFPVAV GWN AI+++CGN +WKGAPTT L+SVAVTK++++VL+ N LPG+ICSL GGAD+G AMA D+ V LLSFTGST+VG V + VQERFG+ LLELGGNNA+I +DA++ L+VP+ LFAAVGTAGQRCTT RRL +HESI+DEVV RL KAY Q+++GNP + +L GPLHT +AV + A+ AK++GGTV +GGK + GNYVEPT++TG+ HD+ I HTETF PILYV K + E+ WNNEV QGLSSSIFT+D+G++F W+GP GSDCGIVN+NIPTSGAEIGGAFGGEKHTGGGRESGSD+WKQYMRRSTCT NY K+LPLAQGIKF+
Sbjct: 30 STLLINQPQYAWLKELGLREENEGVYNGSWGGRGEVITTYCPANNEPIARVRQASVADYEETVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILVEGVGEVQEYVDICDYAVGLSRMIGGPILPSERSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAMICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGADIGTAMAKDERVNLLSFTGSTQVGKQVGLMVQERFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIHDEVVNRLKKAYAQIRVGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFKNEEEVFAWNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGGRESGSDAWKQYMRRSTCTINYSKDLPLAQGIKFQ 539 The following BLAST results are available for this feature:
BLAST of TCONS_00056981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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