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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057030 ID=TCONS_00057030|Name=TCONS_00057030|organism=Clytia hemisphaerica|type=transcript|length=2285bp
ATTCACCCTGATCACCAGATTATTAGAAGCCGTCACGAAGTTTTGAATGA
AGAAACTTTGTATATGTATGGTGGATTTGTTGACTATTACAAATTGAATG
TCGACATTACTGAGCCAAACTCATATCCCAATATCGTCAGCCAGCGGAGA
GAGGGTATTTGTAAGCAgatagaaatatttcaaattgaaatccCTCAAAT
TGAAATCCTCCACAATGATGAACACAAACCGAAAAAAACGATGGAATTTA
AAATGAAACCGGACTTGACGATGaaagatttgaagaaaaaaatcggcAAG
AGCAATAAACTCGATGGTGACTTTATTGTGTTAAGCTCAAAGAAAAGTCC
AGGCGTACTTCTGGATGATGAGCAGTTGTTAGCTGATTTACTCCTCGACT
TAGATGAGGGTGAGTCACTCGAGTTGAATTTAAACATGATGGAACAAAAA
CCATTTCGTAACTCCCATTCTCATCATATGTTGCAACTTGTAAGGCTAGA
GCTTCCTTATTCAGATTCAAATAGGTATTCTAAGGTAGATTACCCATATT
TGGAAATCGGGCTTCTTGGTATTTCTGCTTTAAAGTCATGGGTCGAAGCA
AATTACGAAATACCTTGCGCAGAGCAGTTACCGACCTTAAAAGacctttt
aaaaaaatgtgaaaTCATTGAAAGTGAGACGTTCCCTGAACATCTGTGCA
ATAAAATAAGACTGGGCTGTATACAAGTAAAGCTTTTTGTGTATTCAACC
AGTGACAAAAATCTGACGTCTCTTTATCAGAAATTGGGAGTACAGACAAT
ATTACCAGTCAATGTATCCGGCTTTGGGACGTCTAACATTTTGCAATATC
ATTATCGAAAGGGAAAAGAGAAACTGGATGTATTCATCGAGAACTCGTTA
CAAATTCCGAAGCTCAAACAGCGACTTTTTGTACATGGTTGTAGAGTAAC
GGCTAACGAtattgagaaattctttttgtcagaaagaGACTCACGAAAGT
TTGAAATAGTGCAAAATAATTACATGATTGAGGGAGAGGGGAATCTGGAT
GAGAATCTGAAAGTGTTGCCTGTCAAACTCGTAGTTCAGGTCGATGACCC
AAAAACAGAGTTATCAGAAAGAGCTAAGCAAATAGGTCTCAGTTGTATTC
GTTCGGTCGTTATAAAACACCCAGATCCTgaaaatccaaccattttttaC
GATTGTCCGTTATCTAAATTGGAAGGTTTGTTGGAAACGAATGAGAAAGA
ATTGAAACGGCTATTGGCTGAGCAACACCAAGATATTTCACCTGAAGACG
TTTGTCTTTTACACAATCGTGATTCAATAACGTCCACGAAGAACATCGAG
GGTCTTTTCATAGAGGGAGATAGTATCCAAGAAACTTTGGAATTAACGTT
AGAAATNGAAGATATTTCAGCTGAAGACGTTTGTCTTTTACACAATCGTG
ATTCAATAACGTCCACGAAGAACATCGAGGATCTTTTCATAGAGGGAGAT
AGTATCCAAGAAACTTTGGAATTAACGTTAGAAATCAAACCAAATGAAGA
CGAGGGGATGCaaagattttgtcaaaagtATGATTTATCTCCTTATAAAC
AGGTTATTATCAAATTTCTTACTGGAGAATTCTCTTTCGATATTTTGTCA
GGGGCCAATACAACTATTGGTCAGATTAAAGACGAAATTTACAAAGCAAA
AAGTATCCCAATACATCTGCAACAGCTCTACCACGAAAACATTGAAGTGC
CAAATGACGCCCAGAATTCGACCTTCATAGCCCAAATGACGATGATATCT
GGAAAACCAATCACTTTAAACCTCATTGTGAAACCGGCTCAAACATTCAA
GATTTATGTCAAAAAAGGAAACTTCATAAACGAGCAATTGGAGATCGAGA
TTTTGGAGACTGCTACCATTTTAGATTTGAAGGAAGAAATAAGCGTTCGT
TCGGGGGTTCCTTCGAAATTGATAAAGATTTTTCGTGATCGCTGCTTCGA
TGATGATTCCCAACCGTTATGGGATTGTGACTTTCATGAAAAACACTATG
AAATTTTTGTTCACAAAATAGTGATCGTTCTCATCGACGACGGAGGAGTC
GTAGAGAGAGAACATTATATCATTAAGAACGAAACAGAAACTCTGGGCAA
TTTACATGAAAATATTTCTCGACGTTATTTTTGTAACGTCAGCTTAAAGA
GCAAAGGATTAAAATCGAATACTTTGCTGAACGATTTGGGAGAAACTGAA
ATAACGTTTGTCGTTACGAACAGGATATGTAGCGT Run BLAST on NCBI protein sequence of TCONS_00057030-protein >TCONS_00057030-protein ID=TCONS_00057030-protein|Name=TCONS_00057030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=761bp
IHPDHQIIRSRHEVLNEETLYMYGGFVDYYKLNVDITEPNSYPNIVSQRR
EGICKQIEIFQIEIPQIEILHNDEHKPKKTMEFKMKPDLTMKDLKKKIGK
SNKLDGDFIVLSSKKSPGVLLDDEQLLADLLLDLDEGESLELNLNMMEQK
PFRNSHSHHMLQLVRLELPYSDSNRYSKVDYPYLEIGLLGISALKSWVEA
NYEIPCAEQLPTLKDLLKKCEIIESETFPEHLCNKIRLGCIQVKLFVYST
SDKNLTSLYQKLGVQTILPVNVSGFGTSNILQYHYRKGKEKLDVFIENSL
QIPKLKQRLFVHGCRVTANDIEKFFLSERDSRKFEIVQNNYMIEGEGNLD
ENLKVLPVKLVVQVDDPKTELSERAKQIGLSCIRSVVIKHPDPENPTIFY
DCPLSKLEGLLETNEKELKRLLAEQHQDISPEDVCLLHNRDSITSTKNIE
GLFIEGDSIQETLELTLEXEDISAEDVCLLHNRDSITSTKNIEDLFIEGD
SIQETLELTLEIKPNEDEGMQRFCQKYDLSPYKQVIIKFLTGEFSFDILS
GANTTIGQIKDEIYKAKSIPIHLQQLYHENIEVPNDAQNSTFIAQMTMIS
GKPITLNLIVKPAQTFKIYVKKGNFINEQLEIEILETATILDLKEEISVR
SGVPSKLIKIFRDRCFDDDSQPLWDCDFHEKHYEIFVHKIVIVLIDDGGV
VEREHYIIKNETETLGNLHENISRRYFCNVSLKSKGLKSNTLLNDLGETE
ITFVVTNRICS Run BLAST on NCBI transcript from alignment at scaffold_284:1055408..1057692 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057030 ID=TCONS_00057030|Name=TCONS_00057030|organism=Clytia hemisphaerica|type=transcript|length=2285bp|location=Sequence derived from alignment at scaffold_284:1055408..1057692 (Clytia hemisphaerica)
ACGCTACATATCCTGTTCGTAACGACAAACGTTATTTCAGTTTCTCCCAA
ATCGTTCAGCAAAGTATTCGATTTTAATCCTTTGCTCTTTAAGCTGACGT
TACAAAAATAACGTCGAGAAATATTTTCATGTAAATTGCCCAGAGTTTCT
GTTTCGTTCTTAATGATATAATGTTCTCTCTCTACGACTCCTCCGTCGTC
GATGAGAACGATCACTATTTTGTGAACAAAAATTTCATAGTGTTTTTCAT
GAAAGTCACAATCCCATAACGGTTGGGAATCATCATCGAAGCAGCGATCA
CGAAAAATCTTTATCAATTTCGAAGGAACCCCCGAACGAACGCTTATTTC
TTCCTTCAAATCTAAAATGGTAGCAGTCTCCAAAATCTCGATCTCCAATT
GCTCGTTTATGAAGTTTCCTTTTTTGACATAAATCTTGAATGTTTGAGCC
GGTTTCACAATGAGGTTTAAAGTGATTGGTTTTCCAGATATCATCGTCAT
TTGGGCTATGAAGGTCGAATTCTGGGCGTCATTTGGCACTTCAATGTTTT
CGTGGTAGAGCTGTTGCAGATGTATTGGGATACTTTTTGCTTTGTAAATT
TCGTCTTTAATCTGACCAATAGTTGTATTGGCCCCTGACAAAATATCGAA
AGAGAATTCTCCAGTAAGAAATTTGATAATAACCTGTTTATAAGGAGATA
AATCATacttttgacaaaatctttGCATCCCCTCGTCTTCATTTGGTTTG
ATTTCTAACGTTAATTCCAAAGTTTCTTGGATACTATCTCCCTCTATGAA
AAGATCCTCGATGTTCTTCGTGGACGTTATTGAATCACGATTGTGTAAAA
GACAAACGTCTTCAGCTGAAATATCTTCNATTTCTAACGTTAATTCCAAA
GTTTCTTGGATACTATCTCCCTCTATGAAAAGACCCTCGATGTTCTTCGT
GGACGTTATTGAATCACGATTGTGTAAAAGACAAACGTCTTCAGGTGAAA
TATCTTGGTGTTGCTCAGCCAATAGCCGTTTCAATTCTTTCTCATTCGTT
TCCAACAAACCTTCCAATTTAGATAACGGACAATCGtaaaaaatggttgg
attttcAGGATCTGGGTGTTTTATAACGACCGAACGAATACAACTGAGAC
CTATTTGCTTAGCTCTTTCTGATAACTCTGTTTTTGGGTCATCGACCTGA
ACTACGAGTTTGACAGGCAACACTTTCAGATTCTCATCCAGATTCCCCTC
TCCCTCAATCATGTAATTATTTTGCACTATTTCAAACTTTCGTGAGTCtc
tttctgacaaaaagaatttctcaataTCGTTAGCCGTTACTCTACAACCA
TGTACAAAAAGTCGCTGTTTGAGCTTCGGAATTTGTAACGAGTTCTCGAT
GAATACATCCAGTTTCTCTTTTCCCTTTCGATAATGATATTGCAAAATGT
TAGACGTCCCAAAGCCGGATACATTGACTGGTAATATTGTCTGTACTCCC
AATTTCTGATAAAGAGACGTCAGATTTTTGTCACTGGTTGAATACACAAA
AAGCTTTACTTGTATACAGCCCAGTCTTATTTTATTGCACAGATGTTCAG
GGAACGTCTCACTTTCAATGAtttcacatttttttaaaaggtCTTTTAAG
GTCGGTAACTGCTCTGCGCAAGGTATTTCGTAATTTGCTTCGACCCATGA
CTTTAAAGCAGAAATACCAAGAAGCCCGATTTCCAAATATGGGTAATCTA
CCTTAGAATACCTATTTGAATCTGAATAAGGAAGCTCTAGCCTTACAAGT
TGCAACATATGATGAGAATGGGAGTTACGAAATGGTTTTTGTTCCATCAT
GTTTAAATTCAACTCGAGTGACTCACCCTCATCTAAGTCGAGGAGTAAAT
CAGCTAACAACTGCTCATCATCCAGAAGTACGCCTGGACTTTTCTTTGAG
CTTAACACAATAAAGTCACCATCGAGTTTATTGCTCTTgccgattttttt
cttcaaatctttCATCGTCAAGTCCGGTTTCATTTTAAATTCCATCGTTT
TTTTCGGTTTGTGTTCATCATTGTGGAGGATTTCAATTTGAGggatttca
atttgaaatatttctatcTGCTTACAAATACCCTCTCTCCGCTGGCTGAC
GATATTGGGATATGAGTTTGGCTCAGTAATGTCGACATTCAATTTGTAAT
AGTCAACAAATCCACCATACATATACAAAGTTTCTTCATTCAAAACTTCG
TGACGGCTTCTAATAATCTGGTGATCAGGGTGAAT Coding sequence (CDS) from alignment at scaffold_284:1055408..1057692 >TCONS_00057030 ID=TCONS_00057030|Name=TCONS_00057030|organism=Clytia hemisphaerica|type=CDS|length=2283bp|location=Sequence derived from alignment at scaffold_284:1055408..1057692 (Clytia hemisphaerica)
GCTACATATCCTGTTCGTAACGACAAACGTTATTTCAGTTTCTCCCAAAT
CGTTCAGCAAAGTATTCGATTTTAATCCTTTGCTCTTTAAGCTGACGTTA
CAAAAATAACGTCGAGAAATATTTTCATGTAAATTGCCCAGAGTTTCTGT
TTCGTTCTTAATGATATAATGTTCTCTCTCTACGACTCCTCCGTCGTCGA
TGAGAACGATCACTATTTTGTGAACAAAAATTTCATAGTGTTTTTCATGA
AAGTCACAATCCCATAACGGTTGGGAATCATCATCGAAGCAGCGATCACG
AAAAATCTTTATCAATTTCGAAGGAACCCCCGAACGAACGCTTATTTCTT
CCTTCAAATCTAAAATGGTAGCAGTCTCCAAAATCTCGATCTCCAATTGC
TCGTTTATGAAGTTTCCTTTTTTGACATAAATCTTGAATGTTTGAGCCGG
TTTCACAATGAGGTTTAAAGTGATTGGTTTTCCAGATATCATCGTCATTT
GGGCTATGAAGGTCGAATTCTGGGCGTCATTTGGCACTTCAATGTTTTCG
TGGTAGAGCTGTTGCAGATGTATTGGGATACTTTTTGCTTTGTAAATTTC
GTCTTTAATCTGACCAATAGTTGTATTGGCCCCTGACAAAATATCGAAAG
AGAATTCTCCAGTAAGAAATTTGATAATAACCTGTTTATAAGGAGATAAA
TCATacttttgacaaaatctttGCATCCCCTCGTCTTCATTTGGTTTGAT
TTCTAACGTTAATTCCAAAGTTTCTTGGATACTATCTCCCTCTATGAAAA
GATCCTCGATGTTCTTCGTGGACGTTATTGAATCACGATTGTGTAAAAGA
CAAACGTCTTCAGCTGAAATATCTTCNATTTCTAACGTTAATTCCAAAGT
TTCTTGGATACTATCTCCCTCTATGAAAAGACCCTCGATGTTCTTCGTGG
ACGTTATTGAATCACGATTGTGTAAAAGACAAACGTCTTCAGGTGAAATA
TCTTGGTGTTGCTCAGCCAATAGCCGTTTCAATTCTTTCTCATTCGTTTC
CAACAAACCTTCCAATTTAGATAACGGACAATCGtaaaaaatggttggat
tttcAGGATCTGGGTGTTTTATAACGACCGAACGAATACAACTGAGACCT
ATTTGCTTAGCTCTTTCTGATAACTCTGTTTTTGGGTCATCGACCTGAAC
TACGAGTTTGACAGGCAACACTTTCAGATTCTCATCCAGATTCCCCTCTC
CCTCAATCATGTAATTATTTTGCACTATTTCAAACTTTCGTGAGTCtctt
tctgacaaaaagaatttctcaataTCGTTAGCCGTTACTCTACAACCATG
TACAAAAAGTCGCTGTTTGAGCTTCGGAATTTGTAACGAGTTCTCGATGA
ATACATCCAGTTTCTCTTTTCCCTTTCGATAATGATATTGCAAAATGTTA
GACGTCCCAAAGCCGGATACATTGACTGGTAATATTGTCTGTACTCCCAA
TTTCTGATAAAGAGACGTCAGATTTTTGTCACTGGTTGAATACACAAAAA
GCTTTACTTGTATACAGCCCAGTCTTATTTTATTGCACAGATGTTCAGGG
AACGTCTCACTTTCAATGAtttcacatttttttaaaaggtCTTTTAAGGT
CGGTAACTGCTCTGCGCAAGGTATTTCGTAATTTGCTTCGACCCATGACT
TTAAAGCAGAAATACCAAGAAGCCCGATTTCCAAATATGGGTAATCTACC
TTAGAATACCTATTTGAATCTGAATAAGGAAGCTCTAGCCTTACAAGTTG
CAACATATGATGAGAATGGGAGTTACGAAATGGTTTTTGTTCCATCATGT
TTAAATTCAACTCGAGTGACTCACCCTCATCTAAGTCGAGGAGTAAATCA
GCTAACAACTGCTCATCATCCAGAAGTACGCCTGGACTTTTCTTTGAGCT
TAACACAATAAAGTCACCATCGAGTTTATTGCTCTTgccgatttttttct
tcaaatctttCATCGTCAAGTCCGGTTTCATTTTAAATTCCATCGTTTTT
TTCGGTTTGTGTTCATCATTGTGGAGGATTTCAATTTGAGggatttcaat
ttgaaatatttctatcTGCTTACAAATACCCTCTCTCCGCTGGCTGACGA
TATTGGGATATGAGTTTGGCTCAGTAATGTCGACATTCAATTTGTAATAG
TCAACAAATCCACCATACATATACAAAGTTTCTTCATTCAAAACTTCGTG
ACGGCTTCTAATAATCTGGTGATCAGGGTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057030-exon-scaffold_284-1491911889:1055408..1057692 | TCONS_00057030-exon-scaffold_284-1491911889:1055408..1057692 | Clytia hemisphaerica | exon |
| TCONS_00057030-exon-scaffold_284-1510915933:1055408..1057692 | TCONS_00057030-exon-scaffold_284-1510915933:1055408..1057692 | Clytia hemisphaerica | exon |
| TCONS_00057030-exon-scaffold_284-1575043694:1055408..1057692 | TCONS_00057030-exon-scaffold_284-1575043694:1055408..1057692 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1055408..1057692 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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