TCONS_00057064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057064
Unique NameTCONS_00057064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057064 ID=TCONS_00057064|Name=TCONS_00057064|organism=Clytia hemisphaerica|type=transcript|length=369bp
CAAACTTTTCGATGACACTTGGCTTAATTCAACGCGTATATGCTGTAAAT
CAGTTGAAGATTGAAGTTCAAAGTGATAAGACGTTGTTGGGAGTAATGTT
GAAAAGTTTTCTTGCCGAACTTCTGAAACATCAATTCCCTACTCCAATCT
CTGtttgaattCTCACAATGGAATATCAGATTTGATCATCCACGTCTATC
ACACATGTGTCACATCAAACCGAGGCTCAAAACTGGTAACTAACCAACTA
ACCAACTAACCAAATACTACACGTAGTTGAGTCTAAACGAAGACTGTTTC
AAGTTGAGTGCAATCGAGACGATTTGAAATGACgatgaaaaatgttgaaa
cattCATTGAAAGTAAGTT
Run BLAST on NCBI

transcript from alignment at scaffold_285:202593..203203+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057064 ID=TCONS_00057064|Name=TCONS_00057064|organism=Clytia hemisphaerica|type=transcript|length=611bp|location=Sequence derived from alignment at scaffold_285:202593..203203+ (Clytia hemisphaerica)
CAAACTTTTCGATGACACTTGGCTTAATTCAACGCGTATATGCTGTAAAT
CAGTTGAAGATTGAAGTTCAAAGTGATAAGACGTTGTTGGGAGTAATGTT
GAAAAGTTTTCTTGCCGAACTTCTGAAACATCAATTCCCTACTCCAATCT
CTGGTAAGGAAGCTTCTATCTTTTTACTTTATCGAGCGTAAAATCCTGAt
gtataaattattttgactttttttagcCAAAACGTTTTAAGGATTTGGAA
TTTGAGATTTACACTAGTGCAAATGTTTGTATAACAGCCTCGTAGGTTAT
CGCTACATTGGGCAAGACAAGCTTTACTAAACTTCAACCAAACGATTTGA
GACAAAGTAAGACCTGTGTTGtaaaatttttgtcttttttttcagtttga
attCTCACAATGGAATATCAGATTTGATCATCCACGTCTATCACACATGT
GTCACATCAAACCGAGGCTCAAAACTGGTAACTAACCAACTAACCAACTA
ACCAAATACTACACGTAGTTGAGTCTAAACGAAGACTGTTTCAAGTTGAG
TGCAATCGAGACGATTTGAAATGACgatgaaaaatgttgaaacattCATT
GAAAGTAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035949XLOC_035949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057064-exon-scaffold_285-1491911889:202593..202745TCONS_00057064-exon-scaffold_285-1491911889:202593..202745Clytia hemisphaericaexon
TCONS_00057064-exon-scaffold_285-1510915933:202593..202745TCONS_00057064-exon-scaffold_285-1510915933:202593..202745Clytia hemisphaericaexon
TCONS_00057064-exon-scaffold_285-1575043694:202593..202745TCONS_00057064-exon-scaffold_285-1575043694:202593..202745Clytia hemisphaericaexon
TCONS_00057064-exon-scaffold_285-1491911889:202988..203203TCONS_00057064-exon-scaffold_285-1491911889:202988..203203Clytia hemisphaericaexon
TCONS_00057064-exon-scaffold_285-1510915933:202988..203203TCONS_00057064-exon-scaffold_285-1510915933:202988..203203Clytia hemisphaericaexon
TCONS_00057064-exon-scaffold_285-1575043694:202988..203203TCONS_00057064-exon-scaffold_285-1575043694:202988..203203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:202593..203203 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.1386	38.2723	27.6167	22.3518	0.299023	0.708877	0	0.53377	0	0	0	0	0	0	0	0	0	0	1.17855	0	0.214387	0	48.8137	32.8218	0	0	1.82426	4.21829	17.4738	24.3224
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top