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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057077 ID=TCONS_00057077|Name=TCONS_00057077|organism=Clytia hemisphaerica|type=transcript|length=668bp
AACAGTGACACCAACAAAAAGAGTTGCAAGTACAACGAATAATCCATCTT
TGTTGCTGGATATCAAAGTGGATCGGTTTCTCTGTTGGTGTTGACGGTTG
TTGTGGTTGGGGATGATTTGTTCGTGGAATGTCAGTCTGGTTCTGTTCTT
GATGTGGTTGGGGATCATTGGTCAGAGGAGGGATTCTTGAGTccattcat
tttcaatttcgacACCATTTACAAAGCTTTCAATTTGACTCAAGTCATTC
CTGTCCAATTTCCCCTCAATTCTTGCCAGGGTTGCATGTATCTTATTGAA
CTCTTGAGATATCCAGTCTTTCAGTTCTTTCATCTCTGAATTTTTAGTGC
CTTCCTGGTTGCCAGGTGTTGACGTACCACTGAAAAACATAGGTATCACA
CCAGGCAAACTCTAATTCATCTCCGGGGAACCTGTTGATTTGGTGATTGA
TGTGAATTGTGATGTTGCTGCATGTTTGAACTTGTTATGGATTGGATGGA
CTTCTGAGGATTGTGAACTTGTGTTTGTCGGTGGTCTTTTTGGTTTTGGA
GGTGGCAAGGCTGGTGTTGGTGTTTTGTCTGGTTCTGGCTCTTGGGTTGG
TGATGCTTTTGTTGGAGTTAGTGGCGATGATGATGGAGTTTGTGTTATGA
CTGGCTCTGGGGATGATG Run BLAST on NCBI transcript from alignment at scaffold_285:471442..474179+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057077 ID=TCONS_00057077|Name=TCONS_00057077|organism=Clytia hemisphaerica|type=transcript|length=2738bp|location=Sequence derived from alignment at scaffold_285:471442..474179+ (Clytia hemisphaerica)
AACAGTGACACCAACAAAAAGAGTTGCAAGTACAACGAATAATCCATCTT
TGTGAGTATATGTGACTCTCCAAGGGATTTTAAGTACCTAAATTTCAGAC
CGGTCTCAGAACGGTACTAAAGACCGGTCTTGAAGCGGCCAAATTTCGAA
CCTTTACCGTCCGAGTTGAGTTTCAGATCGGCCTccgaaatttaatttca
atttatttttggtTGATTGGACCGGTCTTGCGTACTTTTGCATAGCGTAC
TTTGAAAAATCTGGCCGCTATTTTGACCGCTCTCGACCGGTCCTGACCAG
TCCATGTGTTTCCCGGTGacgataaaatcaaaacaaaccttatCAGATGT
AATTTGCAGAGCGGGCGGAATAATAGGAAAATCGCGCATTGGATCAACCG
TTCTGTTAAATATGCAGAGTATCACGTTTTTCGATGGCGAGCTTCAGAAT
TTCTTTATAACTCAAGAATCAATGTCGAAGGACTTATGTCAAGATGACTT
ATTCAAAAAGTGAGTAAAGATTTTTCTCAATCTAATTTCGTACACTCTCG
ACATGAGACGATTTAAAACTTTAGAAGAGATTGAAACAGTAAATGTAGAT
ACATGAGAGTTTTGTAATATTTGCAAGTCACATTTATTTGGCAGCAATGT
TTATTTCTATCTAGCATATGAAATTTAGTTGGNAAGTCACATTTATTTGG
CagcaatttttatttctatCTAGCATATGAAATTTAGTTGGCTTGTAAAC
ATAGTTTGTAAATTTTAAATACATAGGGCTATTCCAGAATTTTTCTGTAA
TGGGGGCGGATGACACTGAATTTCTGAGGTCAaaagatttcatcaaaatt
caaaatttccaaagcgagttgaagaaaatgtatgaatctCCAAAGCAATT
TAATTAAAATCAGCAAATAAgagttttattttctgacacCTTTAGCAAAA
GAACATGGATTTTCATCAGGATTTCTGACCACAACAGGCTGGTTAATCTc
caagcacttttttaccacaGTTATTCAGTGGCAAAAACTCAATTtcaaac
tcaattgtgaaaaaaaaaatgtgaaagGTAAATCATTGCAAGATAGAGAA
ATGACGGTACAAAAACTTGAAGGAAAATCAACTCAATCTATTATAATGAG
TCTAACAAATAGTTTTCAAAggtaaaaatttagttttttcataATCAAGT
TAAGAATTTTTAGGCTACTAAGATGCAAGAgggcaaaaattttctttgtc
gcCCAACCATCGTGGCGGGCATTTAATACCACTGCATTGAAACTCAATTT
TAAGACCGAAATGGTGGTAAAGAAAAGTGCTTTGAAATTACCctgacaag
aaaaaaaattatttttaaaaatgtacGTTGTCAGATGGGGGTAATGGAag
ttttctggaatggcccattagcAGAAACAATATTACAATTTGCGTTCAAt
aattacaaaataattttggGTAGGTCATTTGTTaaactttcttatttttt
cctgaAAGACATAACAATTAATAGCAATTAAAAAAGTTGTTTAATCATTA
ATATCTTCAACAAACATAGTAACTCGGGTGatgtgaaaataattatttgt
gTCACAGTTAATGAGACAAGCTTACgagaagaaaaataactttaataAAA
GCCTGCCATTAATCAAGAATTAAAGTTGCTCAATTGATTGTGTAATTAGG
TTCAGTTACTCTAAGCACATGctgaatttttctttaattgcCGTCTATAC
TTTTTGAGTCTCTCAGTTATCATCTTCTCCACTGTGTTTTTGAGGAACTC
AGAAATTCCAAATCTCGTGTAAACATTAGCCAATAccatttttgtctttt
ctttaTCAACCTGTTTGTAACCTTGTTTTCCATTGATATTGTNTTGTCTT
TTCTTTATCAAGCTGTTTGTAACCTTGTTTTCCATTGATATTGCACGTCA
AGAGTTCTGCTTTTGAGAACCACTTCTTGAATTCCGTGAAACCATACTCA
GCTGCATGCCTTATAACGCGCTCATCGCTTTCAATGCTTTGAGCCAATTG
GTTTGCTAGCGCTGATATTTGCTGTTGTTGTTCTTGTtcatttacattta
cattttCCGTTTCTTTTTCAGGTTGCTGGATATCAAAGTGGATCGGTTTC
TCTGTTGGTGTTGACGGTTGTTGTGGTTGGGGATGATTTGTTCGTGGAAT
GTCAGTCTGGTTCTGTTCTTGATGTGGTTGGGGATCATTGGTCAGAGGAG
GGATTCTTGAGTccattcattttcaatttcgacACCATTTACAAAGCTTT
CAATTTGACTCAAGTCATTCCTGTCCAATTTCCCCTCAATTCTTGCCAGG
GTTGCATGTATCTTATTGAACTCTTGAGATATCCAGTCTTTCAGTTCTTT
CATCTCTGAATTTTTAGTGCCTTCCTGGTTGCCAGGTGTTGACGTACCAC
TGAAAAACATAGGTATCACACCAGGCAAACTCTAATTCATCTCCGGGGAA
CCTGTTGATTTGGTGATTGATGTGAATTGTGATGTTGCTGCATGTTTGAA
CTTGTTATGGATTGGATGGACTTCTGAGGATTGTGAACTTGTGTTTGTCG
GTGGTCTTTTTGGTTTTGGAGGTGGCAAGGCTGGTGTTGGTGTTTTGTCT
GGTTCTGGCTCTTGGGTTGGTGATGCTTTTGTTGGAGTTAGTGGCGATGA
TGATGGAGTTTGTGTTATGACTGGCTCTGGGGATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057077-exon-scaffold_285-1491911889:471442..471492 | TCONS_00057077-exon-scaffold_285-1491911889:471442..471492 | Clytia hemisphaerica | exon |
| TCONS_00057077-exon-scaffold_285-1510915933:471442..471492 | TCONS_00057077-exon-scaffold_285-1510915933:471442..471492 | Clytia hemisphaerica | exon |
| TCONS_00057077-exon-scaffold_285-1575043694:471442..471492 | TCONS_00057077-exon-scaffold_285-1575043694:471442..471492 | Clytia hemisphaerica | exon |
| TCONS_00057077-exon-scaffold_285-1491911889:473563..474179 | TCONS_00057077-exon-scaffold_285-1491911889:473563..474179 | Clytia hemisphaerica | exon |
| TCONS_00057077-exon-scaffold_285-1510915933:473563..474179 | TCONS_00057077-exon-scaffold_285-1510915933:473563..474179 | Clytia hemisphaerica | exon |
| TCONS_00057077-exon-scaffold_285-1575043694:473563..474179 | TCONS_00057077-exon-scaffold_285-1575043694:473563..474179 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:471442..474179 + |
Blast
The following BLAST results are available for this feature:
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