TCONS_00057080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057080
Unique NameTCONS_00057080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057080 ID=TCONS_00057080|Name=TCONS_00057080|organism=Clytia hemisphaerica|type=transcript|length=665bp
TATTAATGCAATGCGTTATGGATATTGTAAAATTAACAATCCAATCCCTT
GATACTCTGATACTGTagatgttttaatttttatacatttttttggtCTC
AGAATCAACAAAAAAAGGATGCCATCTCGACGGACCATCAATAGACGGTT
ATTATCAACACAATCACATTCAATATCTCCAGCAGTATCGCCAGCTAAAC
AAAGACCTAAACTAAGACTACCAACacttaaaataaacaaagactGTAGA
CTGAATTTGCCATCTTGGATTAAAGAACAGATTCAAAATGATGAATACAG
TGGATTGAGATGGGTTGATGAAAAGAAAGGACATTTTTTAGTTTCGTGGA
AACATGCATCTAGACAAGGCTGGCTCGAAGAAGAAGATGGTAGATTATTT
AAAGATTGGGCTTTATATACAGGTGTCTATAAACCAGGGCGAGACGATCC
TAACCCAAAACAATGGAAAGCGAATTTCCGATGTGCTTTAAATGCCAGTG
CTGCTATCACCAGCGTTAAAGGCTGCGGAAAAACCAATGGCAAAGATGCT
CATAGAGTTTTCAAATTAGACAAAACATACGGTGGCTTCGtAACGAAGAG
AAACAAAGGTCAAAGACTCAAGCTAAACACCAAGattttatcttCAAGCT
CCcaatcatcaaaat
Run BLAST on NCBI

protein sequence of TCONS_00057080-protein

>TCONS_00057080-protein ID=TCONS_00057080-protein|Name=TCONS_00057080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MPSRRTINRRLLSTQSHSISPAVSPAKQRPKLRLPTLKINKDCRLNLPSW
IKEQIQNDEYSGLRWVDEKKGHFLVSWKHASRQGWLEEEDGRLFKDWALY
TGVYKPGRDDPNPKQWKANFRCALNASAAITSVKGCGKTNGKDAHRVFKL
DKTYGGFVTKRNKGQRLKLNTKILSSSSQSSK
Run BLAST on NCBI

transcript from alignment at scaffold_285:571609..572909+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057080 ID=TCONS_00057080|Name=TCONS_00057080|organism=Clytia hemisphaerica|type=transcript|length=1301bp|location=Sequence derived from alignment at scaffold_285:571609..572909+ (Clytia hemisphaerica)
TATTAATGCAATGCGTTATGGATATTGTAAAATTAACAATCCAATCCCTT
GATACTCTGATACTGTagatgttttaatttttatacatttttttggtCTC
AGAATCAACAAAAAAAGGATGCCATCTCGACGGACCATCAATAGACGGTT
ATTATCAACACAATCACATTCAATATCTCCAGCAGTATCGCCAGCTAAAC
AAAGACCTAAACTAAGACTACCAACacttaaaataaacaaagactGTAGA
CTGAATTTGCCATCTTGGATTAAAGAACAGATTCAAAATGATGAATACAG
TGGATTGAGATGGGTTGATGAAAAGAAAGGACATTTTTTAGTTTCGTGGA
AACATGCATCTAGACAAGGCTGGCTCGAAGAAGAAGATGGTAGATTATTT
AAAGATTGGGCTTTATATACAGGTGTCTATAAACCAGGTATGATTTCTAA
TGTAGAAAACTAAACCATCCCCATCTAACATCCATATAGCGTTAAAGTAA
CGTGCTAAAAAAACTGTATCCTCCTTTAATAAACATGTCTCTTTTACTGT
ATCTTCAATTGACTTTCGATTACATTTCTCATGTTTATAGGGCGAGACGA
TCCTAACCCAAAACAATGGAAAGCGAATTTCCGATGTGCTTTAAATGCCA
GTGCTGCTATCACCAGCGTTAAAGGCTGCGGAAAAACCAATGGCAAAGAT
GCTCATAGAGTTTTCAAATTAGACAAAACATACGGTGGCTTCGGTAATTA
GGATTTTCCTCATCCTCTTCCAATCTTATACTTTATGAATAATTTGTTTT
ACTCCCTTGAGATTTAACTGGTCAAAAAGCTATCGAATTTTTGCCATCTT
TTacgggaagaaaaaaaaatcttttaagacTAAGTGATactaaaacctta
aaatttctCCCGATTTTTAGTGAAACAGTCATTAAGTTGAGCTGAAAAAG
GTAATCTGTGCAGCAGCACAAATCTGTGACATCGAAGAAACAAAATAGCC
TAcgaacaaaatttttaaatctataAAATATTGTCAGCACTGTTTGGAAT
AAGatctttaatttttattttacatagtAACGAAGAGAAACAAAGGTCAA
AGACTCAAGCTAAACACCAAGGTAAATTCCAACTTAAATTCAATTCAATG
ACAGTTTTTGTCATCGCATAGGTTTGATAATGTTGATCCTATTGACTTTA
CAATGGTAAAGTCttccaaaaatatattcatGATAAATTCGATTAACAGT
ATACTTTCAtttaattttagattttatcttCAAGCTCCcaatcatcaaaa
t

Coding sequence (CDS) from alignment at scaffold_285:571609..572909+

>TCONS_00057080 ID=TCONS_00057080|Name=TCONS_00057080|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_285:571609..572909+ (Clytia hemisphaerica)
ATGCCATCTCGACGGACCATCAATAGACGGTTATTATCAACACAATCACA
TTCAATATCTCCAGCAGTATCGCCAGCTAAACAAAGACCTAAACTAAGAC
TACCAACacttaaaataaacaaagactGTAGACTGAATTTGCCATCTTGG
ATTAAAGAACAGATTCAAAATGATGAATACAGTGGATTGAGATGGGTTGA
TGAAAAGAAAGGACATTTTTTAGTTTCGTGGAAACATGCATCTAGACAAG
GCTGGCTCGAAGAAGAAGATGGTAGATTATTTAAAGATTGGGCTTTATAT
ACAGGTGTCTATAAACCAGGGCGAGACGATCCTAACCCAAAACAATGGAA
AGCGAATTTCCGATGTGCTTTAAATGCCAGTGCTGCTATCACCAGCGTTA
AAGGCTGCGGAAAAACCAATGGCAAAGATGCTCATAGAGTTTTCAAATTA
GACAAAACATACGGTGGCTTCGtAACGAAGAGAAACAAAGGTCAAAGACT
CAAGCTAAACACCAAGattttatcttCAAGCTCCcaatcatcaaaaATGC
CATCTCGACGGACCATCAATAGACGGTTATTATCAACACAATCACATTCA
ATATCTCCAGCAGTATCGCCAGCTAAACAAAGACCTAAACTAAGACTACC
AACacttaaaataaacaaagactGTAGACTGAATTTGCCATCTTGGATTA
AAGAACAGATTCAAAATGATGAATACAGTGGATTGAGATGGGTTGATGAA
AAGAAAGGACATTTTTTAGTTTCGTGGAAACATGCATCTAGACAAGGCTG
GCTCGAAGAAGAAGATGGTAGATTATTTAAAGATTGGGCTTTATATACAG
GTGTCTATAAACCAGGGCGAGACGATCCTAACCCAAAACAATGGAAAGCG
AATTTCCGATGTGCTTTAAATGCCAGTGCTGCTATCACCAGCGTTAAAGG
CTGCGGAAAAACCAATGGCAAAGATGCTCATAGAGTTTTCAAATTAGACA
AAACATACGGTGGCTTCGtAACGAAGAGAAACAAAGGTCAAAGACTCAAG
CTAAACACCAAGattttatcttCAAGCTCCcaatcatcaaaaATGCCATC
TCGACGGACCATCAATAGACGGTTATTATCAACACAATCACATTCAATAT
CTCCAGCAGTATCGCCAGCTAAACAAAGACCTAAACTAAGACTACCAACa
cttaaaataaacaaagactGTAGACTGAATTTGCCATCTTGGATTAAAGA
ACAGATTCAAAATGATGAATACAGTGGATTGAGATGGGTTGATGAAAAGA
AAGGACATTTTTTAGTTTCGTGGAAACATGCATCTAGACAAGGCTGGCTC
GAAGAAGAAGATGGTAGATTATTTAAAGATTGGGCTTTATATACAGGTGT
CTATAAACCAGGGCGAGACGATCCTAACCCAAAACAATGGAAAGCGAATT
TCCGATGTGCTTTAAATGCCAGTGCTGCTATCACCAGCGTTAAAGGCTGC
GGAAAAACCAATGGCAAAGATGCTCATAGAGTTTTCAAATTAGACAAAAC
ATACGGTGGCTTCGtAACGAAGAGAAACAAAGGTCAAAGACTCAAGCTAA
ACACCAAGattttatcttCAAGCTCCcaatcatcaaaaATGCCATCTCGA
CGGACCATCAATAGACGGTTATTATCAACACAATCACATTCAATATCTCC
AGCAGTATCGCCAGCTAAACAAAGACCTAAACTAAGACTACCAACactta
aaataaacaaagactGTAGACTGAATTTGCCATCTTGGATTAAAGAACAG
ATTCAAAATGATGAATACAGTGGATTGAGATGGGTTGATGAAAAGAAAGG
ACATTTTTTAGTTTCGTGGAAACATGCATCTAGACAAGGCTGGCTCGAAG
AAGAAGATGGTAGATTATTTAAAGATTGGGCTTTATATACAGGTGTCTAT
AAACCAGGGCGAGACGATCCTAACCCAAAACAATGGAAAGCGAATTTCCG
ATGTGCTTTAAATGCCAGTGCTGCTATCACCAGCGTTAAAGGCTGCGGAA
AAACCAATGGCAAAGATGCTCATAGAGTTTTCAAATTAGACAAAACATAC
GGTGGCTTCGtAACGAAGAGAAACAAAGGTCAAAGACTCAAGCTAAACAC
CAAGattttatcttCAAGCTCCcaatcatcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035958XLOC_035958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057080-exon-scaffold_285-1491911889:571609..572045TCONS_00057080-exon-scaffold_285-1491911889:571609..572045Clytia hemisphaericaexon
TCONS_00057080-exon-scaffold_285-1510915933:571609..572045TCONS_00057080-exon-scaffold_285-1510915933:571609..572045Clytia hemisphaericaexon
TCONS_00057080-exon-scaffold_285-1575043694:571609..572045TCONS_00057080-exon-scaffold_285-1575043694:571609..572045Clytia hemisphaericaexon
TCONS_00057080-exon-scaffold_285-1491911889:572199..572351TCONS_00057080-exon-scaffold_285-1491911889:572199..572351Clytia hemisphaericaexon
TCONS_00057080-exon-scaffold_285-1510915933:572199..572351TCONS_00057080-exon-scaffold_285-1510915933:572199..572351Clytia hemisphaericaexon
TCONS_00057080-exon-scaffold_285-1575043694:572199..572351TCONS_00057080-exon-scaffold_285-1575043694:572199..572351Clytia hemisphaericaexon
TCONS_00057080-exon-scaffold_285-1491911889:572686..572729TCONS_00057080-exon-scaffold_285-1491911889:572686..572729Clytia hemisphaericaexon
TCONS_00057080-exon-scaffold_285-1510915933:572686..572729TCONS_00057080-exon-scaffold_285-1510915933:572686..572729Clytia hemisphaericaexon
TCONS_00057080-exon-scaffold_285-1575043694:572686..572729TCONS_00057080-exon-scaffold_285-1575043694:572686..572729Clytia hemisphaericaexon
TCONS_00057080-exon-scaffold_285-1491911889:572879..572909TCONS_00057080-exon-scaffold_285-1491911889:572879..572909Clytia hemisphaericaexon
TCONS_00057080-exon-scaffold_285-1510915933:572879..572909TCONS_00057080-exon-scaffold_285-1510915933:572879..572909Clytia hemisphaericaexon
TCONS_00057080-exon-scaffold_285-1575043694:572879..572909TCONS_00057080-exon-scaffold_285-1575043694:572879..572909Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057080-proteinTCONS_00057080-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:571609..572909 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.155604	0.151739	0.352366	0	3.56729	2.5702	2.80075	2.06017	2.49137	8.36458	1.9706	3.52347	11.7458	13.4341	40.07	32.5709	11.2723	9.33878	21.5034	22.7614	2.2567	1.76119	5.08476	7.62354	23.9739	21.1725	8.00116	7.28666	1.1226	0.70385
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001346Interferon_reg_fact_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0000975regulatory region DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0000975 regulatory region DNA binding
Blast
[Close]
BLAST of TCONS_00057080 vs. Swiss-Prot (Human)
Match: IRF2 (Interferon regulatory factor 2 OS=Homo sapiens GN=IRF2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.024e-28
Identity = 46/107 (42.99%), Postives = 73/107 (68.22%), Query Frame = 2 
Query:  248 RLNLPSWIKEQIQNDEYSGLRWVDEKKGHFLVSWKHASRQGWLEEEDGRLFKDWALYTGVYKPGRDDPNPKQWKANFRCALNASAAITSVKGCGKTNGKDAHRVFKL 568
            R+ +  W++EQI ++   GL+W++++K  F + W HA+R GW  E+D  LF++WA++TG ++PG D P+PK WKANFRCA+N+   I  VK      G +A RV+++
Sbjct:    5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRM 111
The following BLAST results are available for this feature:
BLAST of TCONS_00057080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IRF22.024e-2842.99Interferon regulatory factor 2 OS=Homo sapiens GN=... [more]
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