TCONS_00057084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057084
Unique NameTCONS_00057084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length7329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057084 ID=TCONS_00057084|Name=TCONS_00057084|organism=Clytia hemisphaerica|type=transcript|length=7329bp
GTTCTATGTAAAATAATCAGAAAAGGTATGGTTAGTGAGGAAAGTCTCTT
TTTTGAatgataccttaagggaactattttttgcgggaactaatgtaatt
tttgcggaacttaattttgcagatttttgacttcaaagaaaatttgagcc
gttctgtaaattactccACCTCCACGTTTTtcacatttgaaaaattctgc
gctaacttaattttgcggtttgGGCCAAATCCTCAaaacccgcaaaaatt
agttccctttaaGGTATTACTTTGTAATTTTGATCACAGACATTCAGAGT
TTTTGTGACAAGATCAACACTCTCAAAGCATCACAGGAAGATAAAATTGC
TAGCATAACGGTACTTGACTGGTTAAACTCAGTTTATTTAAATAGAGTGA
CCTGAAAAAgttctttctaaaaaatcaaTAACAGACTTGTGACATTCTTC
TCCCACTAGCCATATTAAATTAGATCCCAAAGCAATACCACCATGTGCAT
GTAGCATTTCAGCGTTGATATAAATTTAAAGTTTGAATGAAAATCAATGA
GCTGCCTTGGAGCTTTCTCTACATTTTAACGAATGAAAGATTTAGATGTA
CATGGCTGTGTAAGAAGGAGTTGCAAATCTCAGCAGCAAAGGGCATGTTT
CATTGAATGCTACAGTTCATCGAAAATCATTTTAAACTGCTCTAGAGTTT
TGCAACTCCTTCGACCCCACCCTCCCCTATTCCCCATATAAAAGTCTAGT
CAACCAAGTCGGTCAAGTCGGTCAAGTGGATCAAGTAGGCTAAGTAGGTT
AAACAGGTTTGAAGAACTAATTGTTGTTTGATATGGCAAAACAAACTCCA
TCGTGATCAGAAAAATACACGTCCTTTACAAAACATTTAActtctttttt
atctttaaagcttTTCTTTAAATAAACATGGTCAAGAAGACCACCTGCTA
GATGAGTTGGTTCATTCACTACCATTTCATATGaagaaagaatatttttc
aagaagTTGTTTGCTGGATCTAGAGCGTCAATGTTGAAATCTCCGACTAT
TATATCAATGTCATCATAAGCTGTCACTTGTCTTAATTCTTCACAAAAAT
CATCTGTCGAGTAATTAGGTGGCTTGTACAAAAGCAAAAGCTTAATAGCC
TTATtactaaatgtttttttcagaaatttaatCATTGTATAGCCAGCTAC
TTTATCACAATCTAAAACTTGAGTCGATGTATTTGAACAGCATGCACTGT
TTTGAAAGCGATTGACTGACATATTGTTATACTCAATATTGAAAGTGTCC
AATTTTTGATCAATGTCACTTGTATCACTTGACAAAGAAAGCTGGGTTTC
AGTGAGGCACAACAAGTCACTGCTAATGAgatcttttgtcttttttatgt
CATCAGCATGTTTTTTCAGAGAGCGTACGTTAAGAAGGGAGACATGCAAA
TATTTAGCAGAGAGTTCTGTAACTGATGAGAAAGAAAGATTATTTTGCAA
AGAACAGTCGTTTCTTAATCGCTCATATTCAAGACCAGCTTCATTGTTTA
CCCGAATCGCGTTTTTATTGTATTCGCCAATTAAGAACAGTCCATTAATG
TCAGTAACTCTAGACAAACTAACATACATTTGACCTTCATTAAAATATCT
TTGATTAAGTAATTCAAAACTAACAACTGCTGATGTGAGAGTCAATCCTT
GTACTTTGTGACTAGTGCATGCGTATGATAAAGTCAGAGGGAATTGTGTT
CTTCGTACCATTAAagtattttcatgttttcttttgttctttcttGTGTC
GAAAGTAGATTCTGCTCTTTCAATTATAGTCCAATTATTTTCTCTGCACA
CATGGTCTAAATTGGATGCTTGTTTACCGGCAGCAGCATCATCAAGCTTG
ACATAAATACCTGATATTATGTTGTTGCTATTAAATTTGAACCTCATAAC
TGTTCCAACTTGGCCATTAACCAATCTATCTGCAATGTCAATGTTTTTTG
TGATAAATACACGAGCACCTACTTTTAAATGAATTATGCGGGCAAGGCCA
CCTGTTTCCCCTGGTCTAGcattttcaatgaatttcaaatcATTATTTGT
CAAATGTTTTGGCACCTCATCTTGTGCAACGATGGAATACTTTTCAGTTG
GTAGCTTATCCAACATTTGTAAATTGTACAAGTCTGCTGGTTTATTTTCT
GCGAAAATATGGGTCGTATTAGCAGGGTAATCTGGACTGTCTGTTGAAAT
AAATCTAGATTTCAAAagctcttctttttctttgtcaaGTTCACCTAAAC
GAATCTGGTTTAAGAGATCAATGAAATCTATATCATCACGCTGCCTCATG
ACAGTTGTTAATTCTGCCATTTGGAAAGTACGCCATAATTCAAATGCAAT
AATATTTTGCATGGATGAACAATCAGCTTTGTATACAGGGTCCCTGTAAA
TTGGTGGAAGTTGATATAAATCACCACACAATAAGACTGACTTTCCAGCA
AAGGGTTTGTCTACACCAAATATTTCACGTAACCTTGAATCTAAGTGTCT
GAACAAACGACTAGAAACCATAGAAATTTCATCAATCATAATTATTTCAA
CACAAGCTAGTTTCTTTTGCAATTTATCTTTGGAAGATGCATTCAATGGA
AATAGCTTTTTGGTAGGGATGATCAGACCAGTGTGTATGGTGGTTCCCGA
GACGTTGATTGCAGCAACAGCTGTTGGTGCAAGTACAAGAATTCTTTCCT
TTGTAGGTTCACCACCTCTGTACATCAAAAGTTTTGACAATGAGTGATAT
ATAGTAGTTAGTAAATGGCTTTTTCCCACGCCTCCGCCACCAGTTAAAAA
AATGTGAAATGGTTCTACACTTTTAGGTGTCTTAgaagaaaggtttttta
caaaGTCCCTTCCCCATTTGTGAATTACATTAAAGACTTCTCTTTGTTGC
TGATTGAGAGATCTAATGCGAGCATTTATTTCATTGTCAGGGAATAAAAT
TGATTCCATTGGTATCGCTGCTCTGAGTTGGGTACCTTCATTGGTATCAT
CATCTGATTCATTATCGTTGGAAGGAGCATTTTCTACCTCAGCATTGGTT
TCATCATTTTCCTGTTGTTCATAGTCATTCATATTGAGTACCATGTCAGT
TCTAAACCTTTGTAAGGCATCATCTACTAAACCGGCATATGGTTGAATCA
AGGCTCTATTGGTCTCAACAGTTTCAATAATACCAGGTTCTAATAGCTTG
GCTGTGTAAGAGTTGTGCTCTTGGGATAGTAATTCATTTTCATCATAGAA
TGGGAGATACAGCATCAAAAGATGATGCGCATAATCTTCTGGCCTTTTAT
TACGGTTAGGTTCATGAAGTCGAAGAACTAGTGGAACTTTCCGACATTTT
AATTTCCCTTTCATTGACCGAAGTGGAACAGTCTTTGGGTAGTtgtttgt
tgtttgatgatttgATTCAATCAAATTATCTTCAAGTTCATTCGGTTGAC
AATCATTTTCATCAGTTTCTTCATACACAATACTATAAAACCTTAAGAAT
TCTGCATAACACATTTTCGATACAGAACTGTAAATTCCATTTGCATCAAT
TGGCCTATCACAATACCTATCTAgcatatttttcttgaaaattgaaGTAC
TATCCTCAGGAAGCtcattaatttcattttcactcAGGCacattttaaac
cttttttctgGTAAATTGGTGTTTGCAAAGGTTACACCTGGGTAAAGTTT
TCTAAGCCATAACTGTGGCATGCTTAGATAGACTGCTTCTTGGACTGATA
CTTCCCGCTTTGAAACATAGGCATGTGCaacagatttcatttgttcataC
TTGTCACCACCATTTTCGAATGCATCTTGAACAGCTTGGGTCATAGCATG
TGAAACTTCATCTTCTGTTTTGGACAGGTATGCACACATGTAAGTGACAG
CCTTGTAATAATTGAACACAGGTTGAATATCTAAATTTGCTTCCCAAGCT
TTTAAACCTTCAGTGAAATAATTATTCACAAAACATGCATTTGTATCACG
CTTCAGATGTATATGAAAATCATCATCCTCAGACACTGAGAGAGCATACT
CATAatcatattttgaaatattaagtGCAAGAAGAACTTCGTCGATAGAT
GGAACTGGACTATAGTTTTCGGCTTCAGTGTCAAAAAAGTTTCGCTTGCT
TGGATTGAGGTTTTCATTGATGTAACTCTTTACTTTAGCTAGTGTTTCTT
TTTGCAATGTCAAAATAGCTTGCTTTTCTTCTTGAGATAATCCTTGAGGT
AAGGGCACAGAAACTATTGTTTGCTCacaaaagaattttccaaaatggAA
TCTGCAAggtgtatttttatatttacgacATGTCTTTGAATGTCGATGTA
ACTGATATGTTGTAACAAGGTGGAATAAATCAGGGTCTTCTTCCTTGGAA
GGAAGATAAACCTTGataattttatcaataaattcaaTGTATTCAGTTTT
AGTCTCTAGAGTCAATTTTGGTGCATTTAAAATCCAGAGAAAAGAATGGA
TATGAGGGCTTCCTcgtacttgaaattcaactcTAATAGCATAATAGGTT
GTTTTACCAAGTGGACCGTCCAAGACAATAGTTTTAAAGAATACTTCAAC
TCTATATTGAAAATGACGAGCAACAAGTACTGGATTACTGTTTAGCAAAT
CACACCTTTCGTGATATGAAAGATTTTCAATAAATTCATTGGTAACATCT
TCACCCTTGAGTTTGTAAATTATGGAAATCATTTCGTTCCAACGAAGATC
CGCGCAACTCAATGTGAAAAAGAAAGTTGGTGGTCCCAATTGCTTGACCA
TTGCTAAAACttcaagctgaaattttttccaataagCCGGGGTTCCTTTG
ACAGTACTCATAAACGCAAAAGCTTTATCATTTGCAATGAATTGCCTCAC
TGTTTCTTTAAAGTTTTGACTCAACATACCTGCATTCAAATTTGAGGCTG
CGACTTTTCTCATCGCAACATTTATTTGATTAGTTAACGAAACTTGTTGA
ATGACAGaattagcaaaaaaaatgtagtctGGGTCTGAAGCAAATTTTTG
AGTATAGTTTAACAAGCGTTGATTGAAATACTTTGAAGGACTTAGCTTAA
CATCCCGTTCGACTTTGTATCCAAATTGACCTTTAGGAAATAAATGAGGA
TGGGCAAGcatttcacaattttcatcATGCAAGATTGAAACAGGCTTTTT
CCCTTGACCAGGTGCTAATGTCAAAATTTCATTGTCTAATTCAGCATCTG
TTGGGGTGTGTGACATGAGGGTTGTTTCATTTGCGCTTGAGCGAAATGCA
TCAAGAGGGTTTGCTGAAGTTTCAAGTTCCTCTAAAACTGTACCATTACT
TTGTGTTTCATTGGCATCAGAGTTTTCCTCTTCTTCATGTTCAATCGTCT
CTTCAGAATTGAAACTTTCAATAGTTGTATCATTTTCTATCATATTCCCA
TCATTAGAAATATCATTCACGTCAATCCTTATGTCCTCATAGAGAGGATT
GTTAGCTTTGANgtcggacaaaattgttgtcggaatactgacgcattcgt
caaatccaacgtcggatatttttactgtcggactagaaagtgtcggacta
ctgacgacctcccTTTTATCCATTTGTAGGGTCTTaaaagatactttgat
ggagGAATTCAAATCAGAGGCTCATGGTGTCCGTACAGAGTATGAGACGT
TACAAAGTCAAATCGAATTGCTCCGTGAACGGAAGAACAAAAATGATATG
TTGAATATGATTGAACTTGAAGAACTTCACTTTTTGTCGTATGATAATTT
CGCTATTTTTGGAAAACTTAAAAGTAAGATTACTGAAAATTGTTATCCCG
GGCGGGTGACGAACCCTGAACAGGTGTTGGCACCAGTTAAACGTTGCTTC
GATGTCCTCAACATGTATTGTCAACTGTCTTTGATGAGACAAATGATGTT
GGGACAACTGGCCGCATTAAgtgaagaaaaacaacaaaagaatcTGCAAG
ATAGTTTCATGAATTTGTTGAAACAAGCACAGACAACAGATCACCAGCCT
ATGGAGCACCCTGGCGCCCGATACGTGATTTATTTGCTTTACGCGCGTCA
ACACCAGTATCCAATCATTGTTGAGTACTTACAACGTTTGGCAATCCGAG
ATGAAGTGGTTTCAAAAGACAATGTAgaaattcgaacaaattttgaTAAG
CAAAACGCTATGTTTTGTAGCGAAGAGTATTTACAAGGGAACTGCCGCTT
AATCAAAAAGGAATCAGAAGGCAGTATAGGTCATCCAGACGCCTTTCCAG
AAAACTGGGGAAGTATCACCAAATCTATGTTCATTTCACCAGACGTCCGC
GTCAAAGCTAAAAACGTTGACAGTAAAGAATATATGGGTCCTTTTCATGG
TCTTGCTGTTTTCTCTGGTGACGAACTTGAGAAGATGAGTGAGATTCAAG
TACTCCCAGGAACCATTGGAACGACTGATACTGCTGTAATGGTTTGTATA
AAAGAAGGCTGGTGTCAAGTTGTTGAAGAATTTTCATTTGAGCAAAACCT
AAAAACACTTAGTGGCCGTGATTTCAGctcaatcaaaacattgatcatAC
CTGAAGGATACCAAGTGACATTATACGCACAAAATACCATTACAACTAAC
AGACAACTTGGACCAATATTTGGCCGGATGATAGTGACAAAGTTTTGTGA
TAGTGATTGGGATGAGATATTGGTGAGAAAATCCGATTCTTCAGCAGCAC
ATTATCCTGTTGTTTGTGATGAAGCAGGTTTCGGTGGATATTGTCAGCAG
CTTGATCAACGGTTCTTGGATAAAAAGAAAGAGCTTGATTCTCTGGAAGA
CGTTCAAGAAAAACCACGCAGTGCTCCTGTCAAATACTCCGTGTGTTCAG
CTGATGGAGTGCAATCGATGAAGATTCCGGCTGGATTCAAAGTCAACCTT
TACACCAAAGATGACATTCTCAATGGGCCTCATACAGGTCCTGCTGAAAT
GCCGTCTCTTGGTGCCATTGATATCACAAAGGCCTTGGTGGAGAAAATTT
CAGAACCACCAAAGTCACCCGTGAGTAGAAAAGACgaagagaaaaaatca
aagatcgTTGATGATGAAAACGAAAAGAAAATCGTTAATTTACTTTCCAA
ATCAACTCATAAAGAAGTTGACGAGCACTCTTCAATTGGATCAAAACGTG
ACATAACGCATAAAAGAAATGCATTGACGCCAGAGGATATCACCAaagct
tttcgaagattccaaaaaaatgaagaatg
Run BLAST on NCBI

transcript from alignment at scaffold_285:584607..594806+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057084 ID=TCONS_00057084|Name=TCONS_00057084|organism=Clytia hemisphaerica|type=transcript|length=10200bp|location=Sequence derived from alignment at scaffold_285:584607..594806+ (Clytia hemisphaerica)
GTTCTATGTAAAATAATCAGAAAAGGTATGGTTAGTGAGGAAAGTCTCTT
TTTTGAatgataccttaagggaactattttttgcgggaactaatgtaatt
tttgcggaacttaattttgcagatttttgacttcaaagaaaatttgagcc
gttctgtaaattactccACCTCCACGTTTTtcacatttgaaaaattctgc
gctaacttaattttgcggtttgGGCCAAATCCTCAaaacccgcaaaaatt
agttccctttaaGGTATTACTTTGTAATTTTGATCACAGACATTCAGAGT
TTTTGTGACAAGATCAACACTCTCAAAGCATCACAGGAAGATAAAATTGC
TAGCATAACGGTACTTGACTGGTTAAACTCAGTTTATTTAAATAGAGTGA
CCTGAAAAAgttctttctaaaaaatcaaTAACAGACTTGTGACATTCTTC
TCCCACTAGCCATATTAAATTAGATCCCAAAGCAATACCACCATGTGCAT
GTAGCATTTCAGCGTTGATATAAATTTAAAGTTTGAATGAAAATCAATGA
GCTGCCTTGGAGCTTTCTCTACATTTTAACGAATGAAAGATTTAGATGTA
CATGGCTGTGTAAGAAGGAGTTGCAAATCTCAGCAGCAAAGGGCATGTTT
CATTGAATGCTACAGTTCATCGAAAATCATTTTAAACTGCTCTAGAGTTT
TGCAACTCCTTCGACCCCACCCTCCCCTATTCCCCATATAAAAGTCTAGT
CAACCAAGTCGGTCAAGTCGGTCAAGTGGATCAAGTAGGCTAAGTAGGTT
AAACAGGTTTGAAGAACTAATTGTTGTTTGATATGGCAAAACAAACTCCA
TCGTGATCAGAAAAATACACGTCCTTTACAAAACATTTAActtctttttt
atctttaaagcttTTCTTTAAATAAACATGGTCAAGAAGACCACCTGCTA
GATGAGTTGGTTCATTCACTACCATTTCATATGaagaaagaatatttttc
aagaagTTGTTTGCTGGATCTAGAGCGTCAATGTTGAAATCTCCGACTAT
TATATCAATGTCATCATAAGCTGTCACTTGTCTTAATTCTTCACAAAAAT
CATCTGTCGAGTAATTAGGTGGCTTGTACAAAAGCAAAAGCTTAATAGCC
TTATtactaaatgtttttttcagaaatttaatCATTGTATAGCCAGCTAC
TTTATCACAATCTAAAACTTGAGTCGATGTATTTGAACAGCATGCACTGT
TTTGAAAGCGATTGACTGACATATTGTTATACTCAATATTGAAAGTGTCC
AATTTTTGATCAATGTCACTTGTATCACTTGACAAAGAAAGCTGGGTTTC
AGTGAGGCACAACAAGTCACTGCTAATGAgatcttttgtcttttttatgt
CATCAGCATGTTTTTTCAGAGAGCGTACGTTAAGAAGGGAGACATGCAAA
TATTTAGCAGAGAGTTCTGTAACTGATGAGAAAGAAAGATTATTTTGCAA
AGAACAGTCGTTTCTTAATCGCTCATATTCAAGACCAGCTTCATTGTTTA
CCCGAATCGCGTTTTTATTGTATTCGCCAATTAAGAACAGTCCATTAATG
TCAGTAACTCTAGACAAACTAACATACATTTGACCTTCATTAAAATATCT
TTGATTAAGTAATTCAAAACTAACAACTGCTGATGTGAGAGTCAATCCTT
GTACTTTGTGACTAGTGCATGCGTATGATAAAGTCAGAGGGAATTGTGTT
CTTCGTACCATTAAagtattttcatgttttcttttgttctttcttGTGTC
GAAAGTAGATTCTGCTCTTTCAATTATAGTCCAATTATTTTCTCTGCACA
CATGGTCTAAATTGGATGCTTGTTTACCGGCAGCAGCATCATCAAGCTTG
ACATAAATACCTGATATTATGTTGTTGCTATTAAATTTGAACCTCATAAC
TGTTCCAACTTGGCCATTAACCAATCTATCTGCAATGTCAATGTTTTTTG
TGATAAATACACGAGCACCTACTTTTAAATGAATTATGCGGGCAAGGCCA
CCTGTTTCCCCTGGTCTAGcattttcaatgaatttcaaatcATTATTTGT
CAAATGTTTTGGCACCTCATCTTGTGCAACGATGGAATACTTTTCAGTTG
GTAGCTTATCCAACATTTGTAAATTGTACAAGTCTGCTGGTTTATTTTCT
GCGAAAATATGGGTCGTATTAGCAGGGTAATCTGGACTGTCTGTTGAAAT
AAATCTAGATTTCAAAagctcttctttttctttgtcaaGTTCACCTAAAC
GAATCTGGTTTAAGAGATCAATGAAATCTATATCATCACGCTGCCTCATG
ACAGTTGTTAATTCTGCCATTTGGAAAGTACGCCATAATTCAAATGCAAT
AATATTTTGCATGGATGAACAATCAGCTTTGTATACAGGGTCCCTGTAAA
TTGGTGGAAGTTGATATAAATCACCACACAATAAGACTGACTTTCCAGCA
AAGGGTTTGTCTACACCAAATATTTCACGTAACCTTGAATCTAAGTGTCT
GAACAAACGACTAGAAACCATAGAAATTTCATCAATCATAATTATTTCAA
CACAAGCTAGTTTCTTTTGCAATTTATCTTTGGAAGATGCATTCAATGGA
AATAGCTTTTTGGTAGGGATGATCAGACCAGTGTGTATGGTGGTTCCCGA
GACGTTGATTGCAGCAACAGCTGTTGGTGCAAGTACAAGAATTCTTTCCT
TTGTAGGTTCACCACCTCTGTACATCAAAAGTTTTGACAATGAGTGATAT
ATAGTAGTTAGTAAATGGCTTTTTCCCACGCCTCCGCCACCAGTTAAAAA
AATGTGAAATGGTTCTACACTTTTAGGTGTCTTAgaagaaaggtttttta
caaaGTCCCTTCCCCATTTGTGAATTACATTAAAGACTTCTCTTTGTTGC
TGATTGAGAGATCTAATGCGAGCATTTATTTCATTGTCAGGGAATAAAAT
TGATTCCATTGGTATCGCTGCTCTGAGTTGGGTACCTTCATTGGTATCAT
CATCTGATTCATTATCGTTGGAAGGAGCATTTTCTACCTCAGCATTGGTT
TCATCATTTTCCTGTTGTTCATAGTCATTCATATTGAGTACCATGTCAGT
TCTAAACCTTTGTAAGGCATCATCTACTAAACCGGCATATGGTTGAATCA
AGGCTCTATTGGTCTCAACAGTTTCAATAATACCAGGTTCTAATAGCTTG
GCTGTGTAAGAGTTGTGCTCTTGGGATAGTAATTCATTTTCATCATAGAA
TGGGAGATACAGCATCAAAAGATGATGCGCATAATCTTCTGGCCTTTTAT
TACGGTTAGGTTCATGAAGTCGAAGAACTAGTGGAACTTTCCGACATTTT
AATTTCCCTTTCATTGACCGAAGTGGAACAGTCTTTGGGTAGTtgtttgt
tgtttgatgatttgATTCAATCAAATTATCTTCAAGTTCATTCGGTTGAC
AATCATTTTCATCAGTTTCTTCATACACAATACTATAAAACCTTAAGAAT
TCTGCATAACACATTTTCGATACAGAACTGTAAATTCCATTTGCATCAAT
TGGCCTATCACAATACCTATCTAgcatatttttcttgaaaattgaaGTAC
TATCCTCAGGAAGCtcattaatttcattttcactcAGGCacattttaaac
cttttttctgGTAAATTGGTGTTTGCAAAGGTTACACCTGGGTAAAGTTT
TCTAAGCCATAACTGTGGCATGCTTAGATAGACTGCTTCTTGGACTGATA
CTTCCCGCTTTGAAACATAGGCATGTGCaacagatttcatttgttcataC
TTGTCACCACCATTTTCGAATGCATCTTGAACAGCTTGGGTCATAGCATG
TGAAACTTCATCTTCTGTTTTGGACAGGTATGCACACATGTAAGTGACAG
CCTTGTAATAATTGAACACAGGTTGAATATCTAAATTTGCTTCCCAAGCT
TTTAAACCTTCAGTGAAATAATTATTCACAAAACATGCATTTGTATCACG
CTTCAGATGTATATGAAAATCATCATCCTCAGACACTGAGAGAGCATACT
CATAatcatattttgaaatattaagtGCAAGAAGAACTTCGTCGATAGAT
GGAACTGGACTATAGTTTTCGGCTTCAGTGTCAAAAAAGTTTCGCTTGCT
TGGATTGAGGTTTTCATTGATGTAACTCTTTACTTTAGCTAGTGTTTCTT
TTTGCAATGTCAAAATAGCTTGCTTTTCTTCTTGAGATAATCCTTGAGGT
AAGGGCACAGAAACTATTGTTTGCTCacaaaagaattttccaaaatggAA
TCTGCAAggtgtatttttatatttacgacATGTCTTTGAATGTCGATGTA
ACTGATATGTTGTAACAAGGTGGAATAAATCAGGGTCTTCTTCCTTGGAA
GGAAGATAAACCTTGataattttatcaataaattcaaTGTATTCAGTTTT
AGTCTCTAGAGTCAATTTTGGTGCATTTAAAATCCAGAGAAAAGAATGGA
TATGAGGGCTTCCTcgtacttgaaattcaactcTAATAGCATAATAGGTT
GTTTTACCAAGTGGACCGTCCAAGACAATAGTTTTAAAGAATACTTCAAC
TCTATATTGAAAATGACGAGCAACAAGTACTGGATTACTGTTTAGCAAAT
CACACCTTTCGTGATATGAAAGATTTTCAATAAATTCATTGGTAACATCT
TCACCCTTGAGTTTGTAAATTATGGAAATCATTTCGTTCCAACGAAGATC
CGCGCAACTCAATGTGAAAAAGAAAGTTGGTGGTCCCAATTGCTTGACCA
TTGCTAAAACttcaagctgaaattttttccaataagCCGGGGTTCCTTTG
ACAGTACTCATAAACGCAAAAGCTTTATCATTTGCAATGAATTGCCTCAC
TGTTTCTTTAAAGTTTTGACTCAACATACCTGCATTCAAATTTGAGGCTG
CGACTTTTCTCATCGCAACATTTATTTGATTAGTTAACGAAACTTGTTGA
ATGACAGaattagcaaaaaaaatgtagtctGGGTCTGAAGCAAATTTTTG
AGTATAGTTTAACAAGCGTTGATTGAAATACTTTGAAGGACTTAGCTTAA
CATCCCGTTCGACTTTGTATCCAAATTGACCTTTAGGAAATAAATGAGGA
TGGGCAAGcatttcacaattttcatcATGCAAGATTGAAACAGGCTTTTT
CCCTTGACCAGGTGCTAATGTCAAAATTTCATTGTCTAATTCAGCATCTG
TTGGGGTGTGTGACATGAGGGTTGTTTCATTTGCGCTTGAGCGAAATGCA
TCAAGAGGGTTTGCTGAAGTTTCAAGTTCCTCTAAAACTGTACCATTACT
TTGTGTTTCATTGGCATCAGAGTTTTCCTCTTCTTCATGTTCAATCGTCT
CTTCAGAATTGAAACTTTCAATAGTTGTATCATTTTCTATCATATTCCCA
TCATTAGAAATATCATTCACGTCAATCCTTATGTCCTCATAGAGAGGATT
GTTAGCTTTGANgtcggacaaaattgttgtcggaatactgacgcattcgt
caaatccaacgtcggatatttttactgtcggactagaaagtgtcggacta
ctgacgacctcccTTTTATCCATTTGTAGGGTCTTaaaagatactttgat
ggagGAATTCAAATCAGAGGCTCATGGTGTCCGTACAGAGTATGAGACGT
TACAAAGTCAAATCGAATTGCTCCGTGAACGGAAGAACAAAAATGATATG
TTGAATATGATTGAACTTGAAGAACTTCACTTTTTGTCGTATGATAATTT
CGCTATTTTTGGTAGGTCtcatataattttcatttttcaaaaaattttca
gagaaaaacTTGCCAGTGGAAGTACCTGTAATGCTAGAAtgcattgactt
ccaagcccgaagggctagactcatgactcctggatgggaaatgaagccac
ttatttcccatccagaacgacCGCGCGTGGTTTCTACACAAACGcttgat
tgaaagtaaaatctatccctatatttcaaaaaatgcagtcctcaaaaaca
aaagagCAGCTAAATACAATCCATCGTCATGAATGTAGCGCGTTCTAGAT
ggtaaataagtggcttcattttttcttgcctgggaaaggttagagattct
attctagcccttcgggctttaaactcaatgctagAATGGAAATAGACTTG
CTCACAAAAAGTTAGGTTTCCCATATACATGTAAAATAAGCTACGCGAAT
TACTATTTATTTGAGGAGAGGTTCAGGGGAAAAATTCTGAATTATGAGAC
CAGCTATTATACAACCAATGTACCAACCTCAGCCCAGGAGATGATGTATT
TCTTAAATAATTATATCAATTGTTATTTAGGAAAACTTAAAAGTAAGATT
ACTGAAAATTGTTATCCCGGGCGGGTGACGAACCCTGAACAGGTGTTGGC
ACCAGTTAAACGTTGCTTCGATGTCCTCAACATGTATTGTCAACTGTCTT
TGATGAGACAAATGATGTTGGGACAACTGGCCGCATTAAgtgaagaaaaa
caacaaaagaatcTGCAAGATAGTTTCATGAATTTGTTGAAACAAGCACA
GACAACAGATCACCAGGTATATATGGCAAaaagtaaagttttaaaaaaat
tggacCCCTCCTCCCTCACTTAAAACGCTTCGGTTGGGTTTATGCTTAGA
AAAAGtgttttatattatattatattagaTATTAAAAACGAATCAccgaa
aaaaaccttttttacggTATTTGCTGAAAAAATTAACCCTTATAAACCAT
ATAGTTTTGAAATCGTCTTATCGAGATCTCTTAGAATCTGCCATtagttt
attaaaaaatttgaaacgttaattccccttttattcttgttttttttttt
tttttNCTCCTCCCTCACTTAAAACGCTTCGGTTGGGTTTATGCTTAGAA
AAAGtgttttatattatattatattagaTATTAAAAACGAATCAccgaaa
aaaaccttttttacggTATTTGCTGAAAAAATTAACCCTTATAAACCATA
TAGTTTTGAAATCGTCTTATCGAGATCTCTTAGAATCTGCCATtagttta
ttaaaaaatttgaaacgttaattccccttttattcttgattttttttttt
tttttaatttaggttTTGAATTTCCTTGCCAAGCCTATGGAGCACCCTGG
CGCCCGATACGTGATTTATTTGCTTTACGCGCGTCAACACCAGTATCCAA
TCATTGTTGAGTACTTACAACGTTTGGCAATCCGAGATGAAGTGGTTTCA
AAAGACAATGTAgaaattcgaacaaattttgaTAAGCAAAACGCTATGTT
TTGTAGCGAAGAGTATTTACAAGGGAACTGCCGCTTAATCAAAAAGGTAT
TGAAAAATGACCATTGAGTATTGGACAGAAAAGCCTTTGTTTTGTGGTAA
AGTAATATTTGATGTTTAATTCTTAACCATTTAACTTTTATGTGAAACCT
GCTATAGCTATCAGTAAGAATATTACTCCTCAACGGACATCATTTCTTTC
AGTTCAAAGCTCTGGGATTATAAGGGTTTAAGCGAAGAAATAAAAAGTCC
CAAATCGACGTCCTGGACGTTGCCAAAACATGCTTTCAGTACTCAGAACC
AAAGTTCGAgcattgtatttttttaaatcacctTAATTCTTTCAGTCCCA
TGCACCGTAACTAAGatcaatttcaaagaaaatgacaCTTGGATCTTGGA
TCGGATCTGGAGGTCACCTCTTGTTGGTTGCCTTCTTAGAGCACTTGGTT
TAAAAGTGGAAAAGAAGTTTGCATGTATTACCTTGCATTTTTTCAGGAAT
CAGAAGGCAGTATAGGTCATCCAGACGCCTTTCCAGAAAACTGGGGAAGT
ATCACCAAATCTATGTTCATTTCACCAGACGTCCGCGTCAAAGCTAAAAA
CGTTGACAGTAAAGAATATATGGGTCCTTTTCATGGTCTTGCTGTTTTCT
CTGGTGACGAACTTGAGAAGATGAGTGAGATTCAAGTACTCCCAGGAACC
ATTGGAACGACTGATACTGCTGTAATGGTTTGTATAAGTAagtaaaagtt
atgttttatcACTCAGTCAGCATTGGATGTTAATACAATGTTCATTTGAC
GTTGATGGTCGTTATAGGACCATGCTCGAACGTTATAAGGTTCCACACAG
TTCCGAAACAAAAAGTCCCCGAACACTGTGTGAAAGTAAAACGctttcgc
tccactattttcatcggaacggaacagCTCCGAACGTTTCTTAAATCAGT
ATGATTACTTCCTACCCGTAACAAACACCATACCGGAGTGATGCGAAACT
GTAATGTTTGAATATGGTCTAAGAAATCTAACCAAATCCCATTAAAAAAA
TCAGCTAAATATCGTACCCCGTCAAAGACCCCTTCATTACTTCTGTTTCA
TAGGATTTGTGTTCTAGTACATGATGATTTCTACGTACTAAACTTTCTGA
CtggaaaacaatggaattcgaaTCTCCAGCAAAAAAATCGAAGGAATATA
AATCCCCACGGAGTGAGAAGGGGCTAACTGTAAATTACATATAAAATAGC
ATGTAACAGATGCATAGATCATATGAAATAGGGTAATTGTGTTCCCGCTG
TGATGTACctcgtttttttatttaatgtttTAGAAGAAGGCTGGTGTCAA
GTTGTTGAAGAATTTTCATTTGAGCAAAACCTAAAAACACTTAGTGGCCG
TGATTTCAGctcaatcaaaacattgatcatACCTGAAGGATACCAAGTGA
CATTATACGCACAAAATACCATTACAACTAACAGACAACTTGGACCAATA
TTTGGCCGGATGATAGTGACAAAGTTTTGTGATAGTGATTGGGATGAGAT
ATTGGTGAGAAAATCCGATTCTTCAGCAGCACATTATCCTGTTGTTTGTG
ATGAAGCAGGTTTCGGTGGATATTGTCAGCAGCTTGATCAACGGTTCTTG
GATAAAAAGAAAGAGCTTGATTCTCTGGAAGGTGAGCTTTAGTCTTTTAA
ATGCGACCGTAGTGCAGCAGTAGAGCATTCGGCTACGATTCACAAGGTTG
TGGGtacaacccccagccgggttataccaaagattctcaaaatggtactc
gatgcctctctgcttcatgctcagcaattaagagaaggttGAGCAATCCA
GGGTAAAAAAAATgatgccctcccctaccttcgggtagatagcaaTCGAA
AgaagagccttcgggtcgcttCCGATTCCGGTCACAGATTTTCTTACTTT
AGTTTTAAAGATTCTCTATTTGTCGTCATTCAAGGATGGTTTGCACGCAG
AAATTTCTGGATATAGACGAAGGCCAAGTTGAACTAAATCAGAAATGAGT
TCTAAAAAAGTTTGAGTTTATCGAaccagtgatattcatattggaagttt
agaTGTGGCTTGCTCGGGTTCTGTTCAGGAATGACGTTCTATTTGTGAAA
AGTTGTAATTCGAAACATTCTGATCACTTTTGCATCTCAAAGAGGTTTTT
CCGAATACTCTACTTTGTAGAGCCGTTTTGATATGCCCAAGAAATCTCAG
AATTTATTTGATTTAGTATCGACTGCTAAAGTATGGTCTAAATAAATTGT
ATCTGCTGATTAAGAGAATGTTTACGAAAAGATCAAATCCTTTAAATGAT
GCTTATACTTTCGATTTCAGACGTTCAAGAAAAACCACGCAGTGCTCCTG
TCAAATACTCCGTGTGTTCAGCTGATGGAGTGCAATCGATGAAGATTCCG
GCTGGATTCAAAGTCAACCTTTACACCAAAGATGACATTCTCAATGGGCC
TCATACAGGTCCTGCTGAAATGCCGTCTCTTGGTGCCATTGATATCACAA
AGGCCTTGGTGGAGAAAATTTCAGAACCACCAAAGTCACCCGTGAGTAGA
AAAGACgaagagaaaaaatcaaagatcgTTGATGATGAAAACGAAAAGAA
AATCGTTAATTTACTTTCCAAATCAACTCATAAAGAAGTTGACGAGCACT
CTTCAATTGGATCAAAACGTGACATAACGCATAAAAGAAATGCATTGACG
CCAGAGGATATCACCAaagcttttcgaagattccaaaaaaatgaagaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035961XLOC_035961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057084-exon-scaffold_285-1491911889:584607..590467TCONS_00057084-exon-scaffold_285-1491911889:584607..590467Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1510915933:584607..590467TCONS_00057084-exon-scaffold_285-1510915933:584607..590467Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1575043694:584607..590467TCONS_00057084-exon-scaffold_285-1575043694:584607..590467Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1491911889:591037..591272TCONS_00057084-exon-scaffold_285-1491911889:591037..591272Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1510915933:591037..591272TCONS_00057084-exon-scaffold_285-1510915933:591037..591272Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1575043694:591037..591272TCONS_00057084-exon-scaffold_285-1575043694:591037..591272Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1491911889:591840..592052TCONS_00057084-exon-scaffold_285-1491911889:591840..592052Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1510915933:591840..592052TCONS_00057084-exon-scaffold_285-1510915933:591840..592052Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1575043694:591840..592052TCONS_00057084-exon-scaffold_285-1575043694:591840..592052Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1491911889:592503..592743TCONS_00057084-exon-scaffold_285-1491911889:592503..592743Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1510915933:592503..592743TCONS_00057084-exon-scaffold_285-1510915933:592503..592743Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1575043694:592503..592743TCONS_00057084-exon-scaffold_285-1575043694:592503..592743Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1491911889:593340..593687TCONS_00057084-exon-scaffold_285-1491911889:593340..593687Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1510915933:593340..593687TCONS_00057084-exon-scaffold_285-1510915933:593340..593687Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1575043694:593340..593687TCONS_00057084-exon-scaffold_285-1575043694:593340..593687Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1491911889:594377..594806TCONS_00057084-exon-scaffold_285-1491911889:594377..594806Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1510915933:594377..594806TCONS_00057084-exon-scaffold_285-1510915933:594377..594806Clytia hemisphaericaexon
TCONS_00057084-exon-scaffold_285-1575043694:594377..594806TCONS_00057084-exon-scaffold_285-1575043694:594377..594806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:584607..594806 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	5.69368e-08	0.434337	1.46214e-09	0.442385	0	0	0	0	0	2.49208e-10	0.273032	9.6396e-05	0	0	0	0	0	0	8.24548e-09	5.8293e-06	0.138895	0	0	0	0.000226979	0	0.345358	0.247411
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025476Helitron_helicase-like
IPR010285DNA_helicase_pif1-like
IPR005135Endo/exonuclease/phosphatase
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0003678 DNA helicase activity
Blast
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BLAST of TCONS_00057084 vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.316e-34
Identity = 130/463 (28.08%), Postives = 200/463 (43.20%), Query Frame = -1 
Query: 1498 IFLTGGGGVGKSHLLTTIYHSLSKLLMYRGGEPTKERILVLAPTAVAAINVSGTTIHTGLIIPTKKLFPLN-----ASSKDKLQKKLACVEIIMIDEISMVSSRLFRHLDSRLREIFGVDKPFAGKSVLLCGDLYQLPPIYRD---PVYKADCSSMQNIIAFELWRTFQMAELTTVMRQRDDIDFIDLLNQIRXXXXX---XXXXXXXKSRFISTDSPDYPANTTHIFAENKPADLYNLQMLDKLPTEKYSIVAQDEVPKHLTNNDLKFIENARPGETGGLARIIHLKVGARVFITKNIDIADRLVNGQVGTVMRFKFNSNNIISGIYVKLDDAAAGKQASNLDHVCRENNWTIIERAESTFDTRKNKRKHENTLMVRRTQFPLTLSYACTSHKVQGLTLTSAVVSFELLNQRYFNEGQMYVSLSRVTDINGLFLIGEYNKNAIRVNNEAGLEYERLRNDCSL 2853
            IF TG  G GKS+LL  I  SL          PT    +  A T VAA ++ GTT+H    I + +  PL      A      Q  L C  ++ IDEISMV + LF  L++  R +   +KPF G  +++CGD  QLPP+ +    P +     S +  +   L       ELT V RQ D   FI LL  +RLG        + +   S  +  D        T +        L N + L +LP + +   A D  P+  +  D +            +++++ LK+GA+V + KN+ ++  LVNG  G V+ F+     +    ++             +  V   + WT+               +     ++ R Q PL L++A + HK QG+TL    +S      R F  GQ YV+LSR   + GL ++ +++  A+R +      Y  LR   SL
Sbjct:  224 IFFTGSAGTGKSYLLKRILGSLP---------PTG--TVATASTGVAACHIGGTTLHAFAGIGSGQA-PLAQCVALAQRPGVRQGWLNCQRLV-IDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFCFQSKSWKRCVPVTL-------ELTKVWRQADQT-FISLLQAVRLGRCSDEVTRQLQATASHKVGRDG----IVATRLCTHQDDVALTNERRLQELPGKVHRFEAMDSNPELASTLDAQCP----------VSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGRGLPQVRFL-----------CGVTEVIHADRWTV---------------QATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISLG----RVFASGQAYVALSRARSLQGLRVL-DFDPMAVRCDPRVLHFYATLRRGRSL 620
The following BLAST results are available for this feature:
BLAST of TCONS_00057084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIF11.316e-3428.08ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN... [more]
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