TCONS_00057088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057088
Unique NameTCONS_00057088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057088 ID=TCONS_00057088|Name=TCONS_00057088|organism=Clytia hemisphaerica|type=transcript|length=2738bp
CTTTTATTACAACTTCTAACTTAGGCTTTATATCTTTGCGGGGGTCAAGG
AAGAAATTTCTGGAATATTTCGAATTCTTTGGCCCTTTTCAAACAAGACT
TCACGTGCACAAGACAGATTTTCCCCATCAGATCAATTCGTATCCAAGGt
gagtttttttaaaaatatcttatTGATACTGCCTAATTGTCTTGAAATGT
TGAAGTACTTGACAATATCTGTATTTAACTCAACTTCCCAGTATGCAAAT
TGGGCATGAGCGATTAAAATGGACTCAAATTCATCGAGAAATCACTTTAT
TTTAGGTGTAAGAATTTCTTCCATCTGCAGGTATCCAATGTGCATGTAAT
TCTTTACACAgcactgaaaaaaattttttgtttgtttatattaGATTCAA
CTATGGCATCTCCATCTCCATCAAAGAAAACCAAAAAAGGTATTTCTCAA
ACATTGACATTACATTCACCTGCATTTACATCTCATCCAGTCTGGAAGGA
AGGAAATGTTTATGCCAGAAATTTCCGTGCTATAGCCTTGGTATAAAAGC
ATCAGAAATCGTCTGCCGGAGATATCCGGTGGGCTCTCCAGATTGGCATG
TCATCAATACACATCAGTGCTACTAGATTAGTCCTCCCTACTTTCAGTCC
TTACCTTACCTTCACAAGGCGGTAACCTCTCTTCAGTCCTTACCTTACCT
TCATAAGGCGGTTAtcaaaatatctttgtttcgtGTTGCCCGATTGACTC
TTGAAAATTGAGTAAATTTGAGTCAGTAATGTCAGACTTTTTGTGACAAT
GACttttcctttgctcaaaaattttacttttgctAATATTAATTGTgagc
aatacacctttcccgtattTCAGATTTCCCGGAAAAAGACCTGTTCTCCA
CCATTGTGATATTTTTTCACGGGAGGTAAACAAACTCGATTTTGCCTACG
TTTGCTTAGGGGAAAGCAGTTTTTGTCTTCTATCTTTTGATGCACAAAtt
cgtttttaaaaaaatttggagGGTAGTATTGTATCATGAATAGTAAAAAC
ATACCATAGTTTGAAGAAATTCTATACGATGGAAGTTGAGAAAAGTCCAA
AAAACCACCTTTTTCTAAGCAATCGCCAGCAAAAATAGGTTTGTTTACCT
CCCGTCCAAGAAACGATGGAGAGCCAAAAAATATGCGCGCGCATATTTTT
TTTGAAATACGGGAAAGGTGTATTGCCGCCTAAATTTGACAATAAATCAT
TGGTATAACTCAAAGTTTTCAAGCTAAAAGGACTTTCGCAATACATTAAC
TGGTAAATTAAAATCTTTTTATTTTTAGATCTAGTTAACTTGGAAGGCTA
CGTCAATTTTGTGGGTTCACCAAGAAAAGCCAAGCAAAAGGCTGCCGACA
AAAAGGAAATCGAGTTCTTTGAAGTATCAGTCAATTGTGAAAACAATACG
GTCCGTGCTGTTTGTTATGATCTCGATCGCAGACCTTTGTTGGAAAAATT
CAACAAAGAAAGTAACTCCTGCTGCTTGCTGAATGCAGAAAAATCAGATA
ATGATGTCATTATTCTAGATGATACAATTATTAAACAAAAGAAGGTTGCT
TTTGATAACAAAACTTTTGAACCACAGATTACATCATTAATGTCAGTTTT
ACAAGAAATTCCCATTTGGGCCAGAGTATCAGTGCTTGGCAGAATCTATG
ACCTACAAGACACGTCCTCATCTTCAAAACAAAAGACAAAACTTAGAGAA
GCCAAAATCATTGACCAATCAAATGTTTCCCGTCAGATAACTTTCTTTGA
CCACTTTGATGAAGTTGATGAAGgGAAAGTATACAAGATTACAAATGTAA
TGGTTGCAAAGTATGATAAGAAGAAAGTCCTCAAAGTTTCGGAAAATTCT
TCAATCCAAGAAATTCATGATAAACCTGAAATTCCAAAACCAGCAACAAC
CACTCGCTCATCTGAAAAATGTTCCGGTATAGTTTGTATGGTCGACCCGA
AATCCTTGAATACAAGATTTTTATGCGGTAAATGTGAAAAAGAAACACAA
CGCAATCATGATAACTTGTTTTATTGTTGCAATAACATATCAATCGAGTC
AGAAATGGTGAAGAAAGAAGACGTCATTTTCATGGTGAAATCGTCAGTCG
GTGAAGAAAGTCTTAAAATTCAATTAAATTCGAAAAAGCATCTGCTGGAA
AGTATGGTTGGTGTGCCGACAACAAATCCTTTATTTCTCAAGTTATTTAT
GGGATCCAAAGTTGATGTTACTTATAAAATGGTTTCAACTGTGAAAGATG
TTGTCGACATATCGGATTGTGCTCAACAATCAACATCTAAATTGGCTCCC
CAAAACATTGACGAACAGCCTTCAACTGACTCTATAAATACAGAAAGTAA
CTGAACTTTTTTGGATTACGtttcagtttgattttttcatttacttgTTT
TAGTTATTATGTATGAGTGAACCTTGTAAATCTTTTGAAACTCTACTCTA
AACCCTTAAGTTTGATGCCGATTTCAGTTTTGAAAATCTGAATAACAACC
AAAATTATGTTCAAGTGTGAGCTATTCTCAAACAAATAACACTTTATTCT
TTACTGAGatatttaaaattcaaaaccaaCAATGTAAATAGATTTCAGCT
TTTTGTTTTTACAGTATTTCTAATACTAGCATTTTGTTATGATATCTTTT
GTTGTTGTGCTGGCCACAACTCCATGAATGTATTTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_285:624331..628178+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057088 ID=TCONS_00057088|Name=TCONS_00057088|organism=Clytia hemisphaerica|type=transcript|length=3848bp|location=Sequence derived from alignment at scaffold_285:624331..628178+ (Clytia hemisphaerica)
CTTTTATTACAACTTCTAACTTAGGCTTTATATCTTTGCGGGGGTCAAGG
AAGAAATTTCTGGAATATTTCGAATTCTTTGGCCCTTTTCAAACAAGACT
TCACGTGCACAAGACAGATTTTCCCCATCAGATCAATTCGTATCCAAGGt
gagtttttttaaaaatatcttatTGATACTGCCTAATTGTCTTGAAATGT
TGAAGTACTTGACAATATCTGTATTTAACTCAACTTCCCAGTATGCAAAT
TGGGCATGAGCGATTAAAATGGACTCAAATTCATCGAGAAATCACTTTAT
TTTAGGTGTAAGAATTTCTTCCATCTGCAGGTATCCAATGTGCATGTAAT
TCTTTACACAgcactgaaaaaaattttttgtttgtttatattaGATTCAA
CTATGGCATCTCCATCTCCATCAAAGAAAACCAAAAAAGGTATTTCTCAA
ACATTGACATTACATTCACCTGCATTTACATCTCATCCAGTCTGGAAGGA
AGGAAATGTTTATGCCAGAAATTTCCGTGCTATAGCCTTGGTATAAAAGC
ATCAGAAATCGTCTGCCGGAGATATCCGGTGGGCTCTCCAGATTGGCATG
TCATCAATACACATCAGTGCTACTAGATTAGTCCTCCCTACTTTCAGTCC
TTACCTTACCTTCACAAGGCGGTAACCTCTCTTCAGTCCTTACCTTACCT
TCATAAGGCGGTTAtcaaaatatctttgtttcgtGTTGCCCGATTGACTC
TTGAAAATTGAGTAAATTTGAGTCAGTAATGTCAGACTTTTTGTGACAAT
GACttttcctttgctcaaaaattttacttttgctAATATTAATTGTgagc
aatacacctttcccgtattTCAGATTTCCCGGAAAAAGACCTGTTCTCCA
CCATTGTGATATTTTTTCACGGGAGGTAAACAAACTCGATTTTGCCTACG
TTTGCTTAGGGGAAAGCAGTTTTTGTCTTCTATCTTTTGATGCACAAAtt
cgtttttaaaaaaatttggagGGTAGTATTGTATCATGAATAGTAAAAAC
ATACCATAGTTTGAAGAAATTCTATACGATGGAAGTTGAGAAAAGTCCAA
AAAACCACCTTTTTCTAAGCAATCGCCAGCAAAAATAGGTTTGTTTACCT
CCCGTCCAAGAAACGATGGAGAGCCAAAAAATATGCGCGCGCATATTTTT
TTTGAAATACGGGAAAGGTGTATTGCCGCCTAAATTTGACAATAAATCAT
TGGTATAACTCAAAGTTTTCAAGCTAAAAGGACTTTCGCAATACATTAAC
TGGTAAATTAAAATCTTTTTATTTTTAGATCTAGTTAACTTGGAAGGCTA
CGTCAATTTTGTGGGTTCACCAAGAAAAGCCAAGCAAAAGGCTGCCGACA
AAAAGGAAATCGAGTTCTTTGAAGTATCAGTCAATTGTGAAAACAATACG
GTCCGTGCTGTTTGTTATGATCTCGATCGCAGACCTTTGTTGGAAAAATT
CAACAAAGAAAGTAACTCCTGCTGCTTGCTGAATGCAGAAAAATCAGATA
ATGATGTCATTATTCTAGATGATACAATTATTAAACAAAAGAAGGTTGCT
TTTGATAACAAAACTTTTGAACCACAGATTACATCATTAATGTCAGTTTT
ACAAGAAATTCCCATTTGGGCCAGAGTATCAGTGCTTGGCAGAATCTATG
ACCTACAAGACACGTCCTCATCTTCAAAACAAAAGACAAAACTTAGAGAA
GCCAAAATCATTGACCAATCAAATGTTTCCCGTCAGATAACTTTCTTTGA
CCACTTTGATGAAGTTGATGAAGGTAAGGATGTTTTAAGAATTTTTAATT
GTTTCTATTCATTACCATCCTCTCCTGACAACTTAATTCCCTGGTGAACT
CTCAAAAGTTTGATTGGAACAGTGCGAATTTTTTAATATGCTTAAATTTG
ATTTAGCTCCCCCTGACACGAGCTTTATTGGGCAGTTCCAGAAAAAAACC
ATTACCCCCCTGTGGACAACAGGGTTTTTTGGAATTTTTTGTCACTTGGA
AATCCTGAGAAATTTGAGAAAGGTCTCGGAAAATCCATTATTTTTCTTCA
TTATTTTGTCATCCGTATCGGAAAATCCTGGAAAATCCATAAAATTTGCT
CTATTTTCTTGCAAAGTATCGGAAAATCCAAGATTTTTCCTTAAAAAATC
TTGAATGTTACGGAAATCCTTAAGTTtctcaaaagtaaattgttacgGAA
AATCCATGTCGTCCACAGGGGGGTAACGGACTATAACTGGAACCGCCCAT
TGGTCACATATGGTGAAATACATTACGTAATCTAACTACATGTTTGTGAA
TTTGACCCTCAACAGTACAGCCACTTTTCATTAATTTAGTTACGTTGTTA
AGTAAAGTGAGGTTAAATTTAATTACACTTTGCGCTAGCTTGTGGTAAAC
CATTTTAGCATGGCTTCAAATGATAAAAGTGGTGCGCCTCTCATTATTGT
GGCTTTTTTTTCGACCAAAAGCAAGTATTTAATTCATATGACGGCCATCG
AAAAATGTTCTATTCGTGTCACCCACCCGCAtcatttttcgctgattttc
caGTGCGGAGATTCCGGTGAGGCAAAATccgggaaaagcaatttgttctt
ataaggtATAGCTGTTTTCTTGATCGCTCTTGGAGGCCATAAAAAATTGT
ATTGTTTGCCGCAATTTTGAAATACCTGGGAATTTTTCCACCGCCTGTCC
ACCCGCATGAATTTTTAACATCCGCTGTGACGCTAACAGagcaatttttc
gatggccgtATGCGCAATGTGAACTATATTTATTTTGCCTAAATATAGCG
CACAAGTTAGAAAATAAATGAGTTTGAGAAAATAAATGAGTTTGTTTTTC
ATGCAActtaactttctttttcttttaatttaggGAAAGTATACAAGATT
ACAAATGTAATGGTTGCAAAGTATGATAAGAAGAAAGTCCTCAAAGTTTC
GGAAAATTCTTCAATCCAAGAAATTCATGATAAACCTGAAATTCCAAAAC
CAGCAACAACCACTCGCTCATCTGAAAAATGTTCCGGTATAGTTTGTATG
GTCGACCCGAAATCCTTGAATACAAGATTTTTATGCGGTAAATGTGAAAA
AGAAACACAACGCAATCATGATAACTTGTTTTATTGTTGCAATAACATAT
CAATCGAGTCAGAAATGGTGAAGAAAGAAGACGTCATTTTCATGGTGAAA
TCGTCAGTCGGTGAAGAAAGTCTTAAAATTCAATTAAATTCGAAAAAGCA
TCTGCTGGAAAGTATGGTTGGTGTGCCGACAACAAATCCTTTATTTCTCA
AGTTATTTATGGGATCCAAAGTTGATGTTACTTATAAAATGGTTTCAACT
GTGAAAGATGTTGTCGACATATCGGATTGTGCTCAACAATCAACATCTAA
ATTGGCTCCCCAAAACATTGACGAACAGCCTTCAACTGACTCTATAAATA
CAGAAAGTAACTGAACTTTTTTGGATTACGtttcagtttgattttttcat
ttacttgTTTTAGTTATTATGTATGAGTGAACCTTGTAAATCTTTTGAAA
CTCTACTCTAAACCCTTAAGTTTGATGCCGATTTCAGTTTTGAAAATCTG
AATAACAACCAAAATTATGTTCAAGTGTGAGCTATTCTCAAACAAATAAC
ACTTTATTCTTTACTGAGatatttaaaattcaaaaccaaCAATGTAAATA
GATTTCAGCTTTTTGTTTTTACAGTATTTCTAATACTAGCATTTTGTTAT
GATATCTTTTGTTGTTGTGCTGGCCACAACTCCATGAATGTATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035963XLOC_035963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057088-exon-scaffold_285-1491911889:624331..626153TCONS_00057088-exon-scaffold_285-1491911889:624331..626153Clytia hemisphaericaexon
TCONS_00057088-exon-scaffold_285-1510915933:624331..626153TCONS_00057088-exon-scaffold_285-1510915933:624331..626153Clytia hemisphaericaexon
TCONS_00057088-exon-scaffold_285-1575043694:624331..626153TCONS_00057088-exon-scaffold_285-1575043694:624331..626153Clytia hemisphaericaexon
TCONS_00057088-exon-scaffold_285-1491911889:627264..628178TCONS_00057088-exon-scaffold_285-1491911889:627264..628178Clytia hemisphaericaexon
TCONS_00057088-exon-scaffold_285-1510915933:627264..628178TCONS_00057088-exon-scaffold_285-1510915933:627264..628178Clytia hemisphaericaexon
TCONS_00057088-exon-scaffold_285-1575043694:627264..628178TCONS_00057088-exon-scaffold_285-1575043694:627264..628178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:624331..628178 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.421979	0.38115	0.131023	0.473492	0.192143	0.151834	0	0.171492	0.69021	0	0	1.70932	0.173692	0.621188	0.199218	0.141336	0.0917855	0	0.148319	0.459396	1.15463	2.35893	0	0.25566	0	0	0.188297	0.189655	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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