TCONS_00057104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057104
Unique NameTCONS_00057104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057104 ID=TCONS_00057104|Name=TCONS_00057104|organism=Clytia hemisphaerica|type=transcript|length=849bp
gtgtcaatccaatgtgaaaaagcttgtgaattaaaattgatgaataagca
aacgatatcactcttatttaaaaacgaaACCTTTAGCTTGTGATATTTTT
TCAGGATCCCAAAGATTTCCTTAATCAGATTCCTGAAAATTATCACGGCA
TCGAACCAATTGTGATAGTGGGTAAAGCGGAAAAGATTTTACAAAGCGAT
AAAGAAGTTAACATTGGACGTTTGTCACCTGAATGGCATGTGGAACTTCA
TTTCAGAATTGATAGTCTACTCTCGAGCCCTGATTGGTGCAAAGTCATGA
TGGTTACAAGCGGCGCAAGTTTTGGGTCTCATGGGTATAGGGTGCCCGCC
TTAACACTTCAGCAACGCCCAAACATGCGTTTAGAAGTTGGAACAAGTCT
TAATCACAACGACAACTACCGGACGTTAGAATCAGTTGCTCTAAACACCG
ACTACCACGTCATCATACAacaaaaatacgtcaaaaacgGAGTTTATAAG
ATGACGGCATTTTTGAACGGCGTTGAAATCATGAGAGCTGACAACACACA
ACCGAGACAATTCTATAATGTAAAAGCGCTCGCTTCGACTAAAATGACGA
ACGCTTGTGACGTCACAATAAGCGATTTCAAAGTCACAAATTTTGTATAA
AGCTGTAaatataatgtttttgttttttttaattatcgaTACTATTATAT
TATCTGGTCTCCAAAATATTTGGTTCTTCTTacaggcgagaccaatttga
ttagttgttttacgggccctgaccaaccctgaaattccaaaaatcgaaat
aaaaataaaattcactacatttttatttgcattgctttacagactccca
Run BLAST on NCBI

protein sequence of TCONS_00057104-protein

>TCONS_00057104-protein ID=TCONS_00057104-protein|Name=TCONS_00057104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MMVTSGASFGSHGYRVPALTLQQRPNMRLEVGTSLNHNDNYRTLESVALN
TDYHVIIQQKYVKNGVYKMTAFLNGVEIMRADNTQPRQFYNVKALASTKM
TNACDVTISDFKVTNFV
Run BLAST on NCBI

transcript from alignment at scaffold_285:213370..219980-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057104 ID=TCONS_00057104|Name=TCONS_00057104|organism=Clytia hemisphaerica|type=transcript|length=6611bp|location=Sequence derived from alignment at scaffold_285:213370..219980- (Clytia hemisphaerica)
GTGTCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTGATGAATAAGCA
AACGATATCACTCTTATTTAAAAACGAAACCTTTAGCTTGTGATATTTTT
TCAGGATCCCAAAGATTTCCTTAATCAGATTCCTGAAAATTATCACGGCA
TCGAACCAATTGTGATAGTGGGTAAAGGTAAGTTTACTTCATCGTAACAT
ATCCTGTACTCTGCACCAGAGTGTATCTCACGTTCATCGCTTTGTAGTAT
TGCCTCTACGGCAATGAATTTTGAAATTAGCCGTAGATACTGGGTCTGTG
TACAGACAACCTATCCTGAAACAAGACTGCAAACACAGTAAATTATAAGA
ATTGATATTTTAGCCTTATAATTTTTTGGAAATCAAAAATTAAACATAAC
TCAAGAATTAGTCGAACGTGCGTCGAAGTTCTCTGTACCAAAGTGTATCT
CACGTTTATCGCTACGGCAATGAATTTTTTAAATTAGCTGTAGATATTGG
GTCTGTGTGCGTCTAAGGCACGGTAGGGATGTACTCATATTTTTTTATAA
AAGACCTTGTCTGTTTCCCAAATTTTAGCGGAAAAGATTTTACAAAGCGA
TAAAGAAGTTAACATTGGACGTTTGTCACCTGAATGGCATGTGGAACTTC
ATTTCAGAATTGATAGTCTACTCTCGAGCCCTGATTGGTGCAAAGTCATG
ATGGTTACAAGCGGTAAATACATACCAATTTTCAGCTTGATGGGAATTTT
GTCCAGGGTGTGGTGAAATTTTTACTACCTTATCGGCCAAAACTTAGTCG
CTCTTAATTTTAGTCGACCTTAATTATTAGTCGGCCCTAATTTTAGTTAC
CTCNGTCTTAATTTTAGTCGACCTTGATTATTAGTCGGCCCTAATTTTAG
TCACCTCGTCAAAACTTAGTCACTAAGGGCCGACTAATAATTAAGACCGA
CTAAAAATTATATATTATTATAATTGTAAATTCTTTGTTAAAGTAATATC
TATATGAAAAGTAGGTTAAGGAAAGCTTCATTATAAACTTTTAATTTGGC
CCAAATTTTTAGTCGACCCTAATTTTAGTCACCAAGCCAAGATTTAGTCA
CTTAGGCCCGACTAAGTTTTGTCCGATAAGGTACTAATTCTACCTAACTA
ATATTATTCTGACAGTGGATGTACCTATTGGAACTCCTATAATGCGCATG
CGTAATTTATCGGTTTTTTTTAAACCGTTAGTGGTTAATCTCCATAATGT
ATAAAAAGTAGTGAATACCCTCAGGGTTGGGATGGCTAACTATATGTCGC
TCTTTATTGTCGTTTTTCCTTGTCATTTCTCGTTATTTCTCGTTTTTATT
CGTCTTTTTTCGTTTTTCTTCGTTTTTACATGCTCGAGATTATTTCTTTT
TTCATCCCACGCTTTCAGTTGCATCAAATCCTGTTCAAACATAGCCATAG
GCACTGGCTCTTACACCTACACACCTCGATTTTATCTCTCTTTTCCCTAT
CTCTGCTTTGTTCAAACCTTATGAAATATTTTTTAAATTGTTTTTGTTAT
CTCCCTTTTCCCTATCTCTGTTTTATTCAAACCTAACACCTAACAAATCA
TCCTTCGATTTGTTTTTGTTATCTCCCTATCTCTGTTTTATTCAAACCTA
ACACCTAACAAATCATCCTTCGATTTGTTTTTGTTATCTCCCTTTTCCCT
ATCTCTGTTTTGTTCAAACCTTATAAAATATTCTTTAAATTGTTTTTGTT
ATCACCCTTTTCCCTATCTCTGTTTTGTTCAAACCTTATAGTCCAGGGGA
ATTTTGGTCATTTTTTACCGAACCCAAAATTTGCGTACACATGGAATTTT
TTGATTGAAATGTGTTCATGGGGTCATTGGGATTGAAAAACCGTCGAGTG
CCACCTGGCACACCTTGAGCATTTTCCATAATGGCGGAATTTTCAAAATG
GCGGATTAAAAAAAATTCAAAATTTTGATATCTTCAAACCTAAGCACATT
ATATACCGTTGGAAAGGATTTTTTATGCTGAACAACATTTTTGTCTACGA
AAAAGTCTGAAAATGTACTCAATGTGAGTAATAAGTGTCCGAAGCTAGGT
CGGTGATGTCATCATTTTTCGGACATGTGCTTTTTTTGTTAAAACTATCA
AGTGTAATATACTGTTGGAAAGGATTTTATATGCTGAACAACTTTTTTGC
TTACGAAAAAGTCTGAAAATGCACTCAATGTGAGTAATAAGTGTCCGAAG
CTAGGTCGGTGATGTCATCATTTTTCGGACATGTGCTTTTTTTGTTAAAA
CTATCAAGTGTAATATACTGTTGGAAAGGATTTTATATGCTGAACAACTT
TTTTGCTTACGAAAAAGTCTGAAAATGCACTCAATGTGAGTAATAAGTGT
CCGAAGCTAGGTCGGTGATGTCATCATTTTTCGGACAAGTGCTTTTTTCG
TTAAAACTATCAAGTGTTATATACCGTTGGAAAGGATTTTATATGCTGAA
CAACTTTTTTGCTTACGAAAAAGTTTGAAAATTCACCCAATGTGAGTAAT
AAGTGTTTGAAGGCATGTAGCTGATGTCATCACTTTTCAGAAACCTGTCT
TTTCCTTTTAGCTTAAATATCGAATCTTCAGAAACTACATATTGTATTTA
GTGAAGCTACGTCAGAATTCTTTTATCTGTATTACTTAGTCAAACTTGAA
AATTGAATTAATTGAAGAACATTATTATATAGAATTGAGTTTCTCTTTAT
TTATTTTCTAGTGAAAGAAAAATTATAAGTTATAAAATGATTGAACAGAA
AAGTTAGCTGAAGACAGAAAAAAGTTTGCTTTCGTTGGAATTTTCTGGTA
AGTCTTAAAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNTAATCCGCCATTTTGAAAATTCCGCCATTATGGAAAA
TGCTCAAGGTGTGCCAGGTGGCACTCGACGGTTTTTCAATCCCAATGACC
CAATGAACACATTTCAATCATAAAATTCCATGTGTACGCAAATTTTGGGT
CAAACCTAAATTCCCCTGGACTATTATAAAATATTCTTCAAATTGTTTTT
GTTATCACCCTTTTCCCTATCTCTGTTTTATTCAAACCTTATAAAATATT
CTTCAAATTGTTTTTGTTATCACCCTTTTCCCTATCTCTGTTTTGTTCAA
ACCTTATAAAATATTCTTCAAATTGTTTTTGTTATCACCCTTTTCCCTAT
CTCTGTTTTGTTCAAACCTAACAAATCATCCTTCGATTTGTTTTTGTTAT
CACCCTTTTCCCTATCTTTGTTTTGTTCAAACCTCGGTTCAAACCTAACA
AATTATCCTTCGATTTGTTTTTAGGCGCAAGTTTTGGGTCTCATGGGTAT
AGGGTGCCCGCCTTAACACTTCAGCAACGCCCAAACATGCGTTTAGAAGT
TGGAACAAGTCTTAATCACAACGACAACTACCGGACGTTAGAATCAGTTG
CTCTAAACACCGACTACCACGTCATCATACAACAAAAATACGTCAAAAAC
GGAGTTTATAAGATGACGGCATTTTTGAACGGCGTTGAAATCATGAGAGC
TGACAACACACAACCGAGACAATTCTATAATGTAAAAGCGCTCGCTTCGA
CTAAAATGACGAACGCTTGTGACGTCACAATAAGCGATTTCAAAGTCACA
AATTTTGTATAAAGCTGTAAATATAATGTTTTTGTTTTTTTTAATTATCG
ATACTATTATATTATCTGGTCTCCAAAATATTTGGTTCTTCTTACAGGCG
AGACCAATTTGATTAGTTGTTTTACGGGCCCTGACCAACCCTGAAATTCC
AAAAATCGAAATAAAAATAAAATTCACTACATTTTTATTTGCATTGCTTT
ACAGACTCCCA

Coding sequence (CDS) from alignment at scaffold_285:213370..219980-

>TCONS_00057104 ID=TCONS_00057104|Name=TCONS_00057104|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_285:213370..219980- (Clytia hemisphaerica)
GCGCAAGTTTTGGGTCTCATGGGTATAGGGTGCCCGCCTTAACACTTCAG
CAACGCCCAAACATGCGTTTAGAAGTTGGAACAAGTCTTAATCACAACGA
CAACTACCGGACGTTAGAATCAGTTGCTCTAAACACCGACTACCACGTCA
TCATACAACAAAAATACGTCAAAAACGGAGTTTATAAGATGACGGCATTT
TTGAACGGCGTTGAAATCATGAGAGCTGACAACACACAACCGAGACAATT
CTATAATGTAAAAGCGCTCGCTTCGACTAAAATGACGAACGCTTGTGACG
TCACAATAAGCGATTTCAAAGTCACAAATTTTGTATAAATGATGGTTACA
AGCGGCGCAAGTTTTGGGTCTCATGGGTATAGGGTGCCCGCCTTAACACT
TCAGCAACGCCCAAACATGCGTTTAGAAGTTGGAACAAGTCTTAATCACA
ACGACAACTACCGGACGTTAGAATCAGTTGCTCTAAACACCGACTACCAC
GTCATCATACAACAAAAATACGTCAAAAACGGAGTTTATAAGATGACGGC
ATTTTTGAACGGCGTTGAAATCATGAGAGCTGACAACACACAACCGAGAC
AATTCTATAATGTAAAAGCGCTCGCTTCGACTAAAATGACGAACGCTTGT
GACGTCACAATAAGCGATTTCAAAGTCACAAATTTTGTATAAATGATGGT
TACAAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035970XLOC_035970Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057104-proteinTCONS_00057104-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057104-exon-scaffold_285-1575043694:219804..219980TCONS_00057104-exon-scaffold_285-1575043694:219804..219980Clytia hemisphaericaexon
TCONS_00057104-exon-scaffold_285-1575043694:219268..219402TCONS_00057104-exon-scaffold_285-1575043694:219268..219402Clytia hemisphaericaexon
TCONS_00057104-exon-scaffold_285-1575043694:213370..213906TCONS_00057104-exon-scaffold_285-1575043694:213370..213906Clytia hemisphaericaexon
TCONS_00057104-exon-scaffold_285-1510915933:219804..219980TCONS_00057104-exon-scaffold_285-1510915933:219804..219980Clytia hemisphaericaexon
TCONS_00057104-exon-scaffold_285-1510915933:219268..219402TCONS_00057104-exon-scaffold_285-1510915933:219268..219402Clytia hemisphaericaexon
TCONS_00057104-exon-scaffold_285-1510915933:213370..213906TCONS_00057104-exon-scaffold_285-1510915933:213370..213906Clytia hemisphaericaexon
TCONS_00057104-exon-scaffold_285-1491911889:219804..219980TCONS_00057104-exon-scaffold_285-1491911889:219804..219980Clytia hemisphaericaexon
TCONS_00057104-exon-scaffold_285-1491911889:219268..219402TCONS_00057104-exon-scaffold_285-1491911889:219268..219402Clytia hemisphaericaexon
TCONS_00057104-exon-scaffold_285-1491911889:213370..213906TCONS_00057104-exon-scaffold_285-1491911889:213370..213906Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:213370..219980 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.48984	5.19447	2.90862	2.57213	0.225159	0.0594311	0.50138	0.470533	1.44417	1.1642	0.393788	0.938793	5.79819	3.63369	2.11841	1.18668	0.582597	0.639796	8.72128	8.03676	1.25935	0.914219	3.47225	2.96781	1.13144	2.09328	0.625853	0.502039	1.71963	1.79336
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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