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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057114 ID=TCONS_00057114|Name=TCONS_00057114|organism=Clytia hemisphaerica|type=transcript|length=1825bpRun BLAST on NCBI transcript from alignment at scaffold_285:307551..313109- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057114 ID=TCONS_00057114|Name=TCONS_00057114|organism=Clytia hemisphaerica|type=transcript|length=5559bp|location=Sequence derived from alignment at scaffold_285:307551..313109- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057114 vs. Swiss-Prot (Human)
Match: ZNF7 (Zinc finger protein 7 OS=Homo sapiens GN=ZNF7 PE=1 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.530e-58 Identity = 105/233 (45.06%), Postives = 141/233 (60.52%), Query Frame = 2
Query: 992 CLVCNKTFNTIGGLHKHLRTHKNNKENECKECGKLFTDPSYLERHECMKL--------STEEPS----------EKPYSCTECGKNYKQQYLLKRHMCSHTGEKPYKCGLCEREFGCNSDLQKHLMIHTGEKPFRCDICDKAFTRKNDLHRHKFIHSDVRPFVCDICTKGFNRTSDLRRHKRIHTGETPYKCDECGEVFSQKTSLNVHQRQHTGERPFKCKKCGKSFSVNCNL 1636
C C K F+ L +H RTH + CKECGK F+ S L +H+ M +++ PS EKP+ C ECGK ++ L +H HTGEKPYKC C + FGC+S L +H HTGEKPF+CD C K F + + L +H+ IH+ +P+VC+ C K F+++S L H+RIH GE PY+C +CG+ FS T L +HQR HTGERP+KC +CGK+FS N L
Sbjct: 336 CRECGKAFSQQSQLVRHQRTHTGERPYPCKECGKAFSQSSTLAQHQRMHTGEKAQILKASDSPSLVAHQRIHAVEKPFKCDECGKAFRWISRLSQHQLIHTGEKPYKCNKCTKAFGCSSRLIRHQRTHTGEKPFKCDECGKGFVQGSHLIQHQRIHTGEKPYVCNDCGKAFSQSSSLIYHQRIHKGEKPYECLQCGKAFSMSTQLTIHQRVHTGERPYKCNECGKAFSQNSTL 568 HSP 2 Score: 166.777 bits (421), Expect = 5.737e-44 Identity = 91/241 (37.76%), Postives = 135/241 (56.02%), Query Frame = 2
Query: 989 QCLVCNKTFNTIGGLHKHLRTHKNNKENECKECGKLFTDPSYLERHECMKLSTEEPSEKPYSCTECGKNYKQQYLLKRHMCSHTGEKPYKCGLCEREFGCNSDLQKHLMIHTGEKPFRCDICDKAFTRKNDLHRHKFIHSDVRPFVCDICTKGFNRTSDLRRHKRIHT-------------GET------------PYKCDECGEVFSQKTSLNVHQRQHTGERPFKCKKCGKSFSVNCNL 1636
+C C K F L +H RTH K +C ECGK F S+L +H+ ++ T EKPY C +CGK + Q L H H GEKPY+C C + F ++ L H +HTGE+P++C+ C KAF++ + L +H+ IH+ V+P+ C C K F+R+S L H+RIHT G T ++C++C ++F ++ L +HQR HTGE+P+KC CGK+F+ + L
Sbjct: 442 KCNKCTKAFGCSSRLIRHQRTHTGEKPFKCDECGKGFVQGSHLIQHQ--RIHT---GEKPYVCNDCGKAFSQSSSLIYHQRIHKGEKPYECLQCGKAFSMSTQLTIHQRVHTGERPYKCNECGKAFSQNSTLFQHQIIHAGVKPYECSECGKAFSRSSYLIEHQRIHTRAQWFYEYGNALEGSTFVSRKKVNTIKKLHQCEDCEKIFRWRSHLIIHQRIHTGEKPYKCNDCGKAFNRSSRL 677 HSP 3 Score: 161.77 bits (408), Expect = 3.338e-42 Identity = 97/244 (39.75%), Postives = 128/244 (52.46%), Query Frame = 2
Query: 968 SAAKTLNQCLVCNKTFNTIG--GLHKHLRTHKNNKENECKECGKLFTDPSYLERHECM--KLSTEEPSEKPYSCTECGKNYKQQYLLKRHMCSHTGEKPYKCGLCEREFGCNSDLQKHLMIHTGEKPFRCDICDKAFTRKNDLHRHKFIHSDVRPFVCDICTKGFNRTSDLRRHKRIHTGETPYKCDECGEVFSQKTSLNVHQRQHTG-----------------------ERPFKCKKCGKSF 1618
SA +C C K LH + T K ++ C+EC K +D C+ K + EKPY C ECGK ++ L +H HTGEKP+KC C + F +S L +H IHTGEKP+RC+ C KAF + + L H+ IH+ RP+ C C K F++ S L RH+R HTGE PY C ECG+ FSQ ++L HQR HTG E+PFKC +CGK+F
Sbjct: 190 SAEGMSQRCEECGKGIRATSDIALHWEINTQKISR---CQECQKKLSD--------CLQGKHTNNCHGEKPYECAECGKVFRLCSQLNQHQRIHTGEKPFKCTECGKAFRLSSKLIQHQRIHTGEKPYRCEECGKAFGQSSSLIHHQRIHTGERPYGCRECGKAFSQQSQLVRHQRTHTGERPYPCKECGKAFSQSSTLAQHQRMHTGEKAQILKASDSPSLVAHQRIHAVEKPFKCDECGKAF 422 HSP 4 Score: 153.295 bits (386), Expect = 2.640e-39 Identity = 87/211 (41.23%), Postives = 118/211 (55.92%), Query Frame = 2
Query: 1076 CKECGKLFTDPSYLERHECMKLSTEEPSEKPYSCTECGKNYKQQYLLKRHMCSHTGEKPYKCGLCEREFGCNSDLQKHLMIHTGEKPFRCDICDKAFTRKNDLHRHKFIHSDVRPFVCDICTKGFNRTSDLRRHKRIHTGETPYKCDECGEVFSQKTSLNVHQRQHTGERPFKCKKCGKSFSVNCNLRSIKSHYLSAPRFLLLLEKDPSPI 1708
C+ECGK S + H E ++K C EC K L +H + GEKPY+C C + F S L +H IHTGEKPF+C C KAF + L +H+ IH+ +P+ C+ C K F ++S L H+RIHTGE PY C ECG+ FSQ++ L HQR HTGERP+ CK+CGK+FS + L + + +L PS +
Sbjct: 198 CEECGKGIRATSDIALH------WEINTQKISRCQECQKKLSD-CLQGKHTNNCHGEKPYECAECGKVFRLCSQLNQHQRIHTGEKPFKCTECGKAFRLSSKLIQHQRIHTGEKPYRCEECGKAFGQSSSLIHHQRIHTGERPYGCRECGKAFSQQSQLVRHQRTHTGERPYPCKECGKAFSQSSTLAQHQRMHTGEKAQILKASDSPSLV 401 HSP 5 Score: 108.227 bits (269), Expect = 2.068e-24 Identity = 66/193 (34.20%), Postives = 95/193 (49.22%), Query Frame = 2
Query: 992 CLVCNKTFNTIGGLHKHLRTHKNNKENECKECGKLFTDPSYLERHECMKLSTEEPSEKPYSCTECGKNYKQQYLLKRHMCSHTGEKPYKCGLCEREFGCNSDLQKHLMIHTGEKPF-------------------------RCDICDKAFTRKNDLHRHKFIHSDVRPFVCDICTKGFNRTSDLRRHKRIHTG 1495
C C K F+ L H R HK K EC +CGK F+ + L H+ ++ T E+PY C ECGK + Q L +H H G KPY+C C + F +S L +H IHT + F +C+ C+K F ++ L H+ IH+ +P+ C+ C K FNR+S L +H++IH G
Sbjct: 499 CNDCGKAFSQSSSLIYHQRIHKGEKPYECLQCGKAFSMSTQLTIHQ--RVHT---GERPYKCNECGKAFSQNSTLFQHQIIHAGVKPYECSECGKAFSRSSYLIEHQRIHTRAQWFYEYGNALEGSTFVSRKKVNTIKKLHQCEDCEKIFRWRSHLIIHQRIHTGEKPYKCNDCGKAFNRSSRLTQHQKIHMG 686 HSP 6 Score: 85.5001 bits (210), Expect = 2.582e-17 Identity = 55/164 (33.54%), Postives = 76/164 (46.34%), Query Frame = 2
Query: 989 QCLVCNKTFNTIGGLHKHLRTHKNNKENECKECGKLFTDPSYLERHECMKLSTEEPSEKPYSCTECGKNYKQQYLLKRHMCSHTG-------------------------EKPYKCGLCEREFGCNSDLQKHLMIHTGEKPFRCDICDKAFTRKNDLHRHKFIH 1405
+CL C K F+ L H R H + +C ECGK F+ S L +H+ + KPY C+ECGK + + L H HT +K ++C CE+ F S L H IHTGEKP++C+ C KAF R + L +H+ IH
Sbjct: 526 ECLQCGKAFSMSTQLTIHQRVHTGERPYKCNECGKAFSQNSTLFQHQIIHAGV-----KPYECSECGKAFSRSSYLIEHQRIHTRAQWFYEYGNALEGSTFVSRKKVNTIKKLHQCEDCEKIFRWRSHLIIHQRIHTGEKPYKCNDCGKAFNRSSRLTQHQKIH 684 The following BLAST results are available for this feature:
BLAST of TCONS_00057114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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