TCONS_00057119 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057119
Unique NameTCONS_00057119
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057119 ID=TCONS_00057119|Name=TCONS_00057119|organism=Clytia hemisphaerica|type=transcript|length=1588bp
ATTATTCTTAGGTGGACCAACCAGCTCCATTGAATGATTCGGATAAAATG
GGAATCgaaattgaaagtgaatatGTATCTTCTAAGAGAGGTGAACAAAT
TGATTCAAATATCTCTGCTGACTTTACAATTGAAAACGATATCTCGCCAA
AGGAAGTATCGACACCAATAAAGTCAAAGGATTCAAAACAACCTGAGAAG
AAGAAAGATGTGATTAAAAAACCAGTGCTATTGATCTATGACCGTAACTT
CAAATTGGTTATTGATAATCTCGATACACACCACAAAGTGTCCAATATTA
CAGAGAAGAACCTGAACATTGATCTGCATCCTACAGCAAAGGTGGCAGTT
TTTTATCGAGCCCCACCAGAAGCGTCGAGCGATACGAAACCACATTGTAC
GATCAGTGAACTTGACAACAGTGTATTCATCTGCACTCCCGAAGACCACG
TTATACAACGCCTGAATTTATCAGGGGGGACGAGGGCCAAAATCGTCGAA
CCAAAATCGTCATCCGGAATGGCAAACCGGCGAACAATATTGGTGTTTGA
ACCAGAAAACTTGAGTTAAATTAGTTGATTAGAAAATTGGTTTGATTAGT
CGGGCCTGGTTTTCTAGTTTTAAGCTCTCAATTGTTTCCTGGAGGGAGGT
TTACATAGTCCGTACCTACTCTAAGAACAGGGTAGTGACgtcctgaaaaa
tacaaagagGGGGAAAAGAATTGTTTGTAGAAAGGGGAAGTTTGGAGAGG
TTCATCTAGAAAGGAGGTTAACATATCAGTTTAAACTTCTTTGAGACTAT
CTTTCCAAGCTTTCAGTTTTGCAGTCTGAAACTGAGCTAAAATCCTAAAA
GTTTTCTGCTAGATTACCAAGCAATCTACTTTATCCACTTTTGTAAAGAG
AATATTGCAGATAAACCCTAATGCACCTCATTCAAGGGTGAATATGCTCG
ACTTGGGCATTCAAGAATGCTATGAAAGTGGgcaaaaaagccaaaatatt
tAAAGGGGGTAGAACATAGAGTAGGGGGTTGCTTTAGATAGGGCAGGCGA
TCAGGGATACCAACCAAGGGCCTAGAAAGATGACTTGTTGAGATTTAAAA
GGAGAAGACACCACCCCACTGATTTGGTATCATAGCCACCGAAATCGACT
AccttttggcattttctcaaactCCACGACAGTACTGCCTACTTTTGTCA
AAAAGAAGCAGgccacattttttgaaaaatatctttaaaatgaaaaaata
tgccCTCTTGTGGCCTGCTTGTAAAAAATAAAGGGGCAGTGTATGTCAGT
GGTCTATACCAGAGATCTCTAGTGTAAAGGTCACTTCATTTCAAGACTGG
CCTGATTGACGCGAGATACTAAATTCGATAGTTATTAGGATTTATTTTCT
GATATTTCTGATGTATGTATTGTAGTGTATCTGTGATCAattttttctat
gttttaaTGTTATAGATAATGGATAAAGTTAATGGACGTCTTGGTAAATT
GGTAAATTCCCGATGTATGTATGGGTTGAACTCCTGAAGTTGGAATGGGT
TGGGGTCGTTGATTTTGAGAGGTTTGGGTTTGCGAAGT
Run BLAST on NCBI

protein sequence of TCONS_00057119-protein

>TCONS_00057119-protein ID=TCONS_00057119-protein|Name=TCONS_00057119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MGIEIESEYVSSKRGEQIDSNISADFTIENDISPKEVSTPIKSKDSKQPE
KKKDVIKKPVLLIYDRNFKLVIDNLDTHHKVSNITEKNLNIDLHPTAKVA
VFYRAPPEASSDTKPHCTISELDNSVFICTPEDHVIQRLNLSGGTRAKIV
EPKSSSGMANRRTILVFEPENLS
Run BLAST on NCBI

transcript from alignment at scaffold_285:510372..512696-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057119 ID=TCONS_00057119|Name=TCONS_00057119|organism=Clytia hemisphaerica|type=transcript|length=2325bp|location=Sequence derived from alignment at scaffold_285:510372..512696- (Clytia hemisphaerica)
ATTATTCTTAGGTGGACCAACCAGCTCCATTGAATGATTCGGATAAAATG
GGAATCGAAATTGAAAGTGAATATGTATCTTCTAAGAGAGGTAAGAACCA
AATCAATGTCTTCTTTGTGTTTTTCATTTTCTGTTGTGTTTTCATAAGAT
CAGATAGCTGTACCTAGCCTAACGGTGTAAATGTGTAGATGTAATTGATA
ATGTAATGTGTGATAATTGTTTTGATCGGAAATGCGCAAATCTATCAACA
ACTTGTTTTTGCTCGAAATTCAAACCAATATTTACAAATTACCTCACTTT
CACTGGCAGCTTATGTTGGAATTCTTGCGTATGTGTAGTAAGTTTTGGTT
AGAGAGTATTGATCTCCAGACTAAAGATGAGAGGGTACTCAAACATTCAG
CATGAATAAAATATTCAAAAATTTTAAACACTGATATTTTTTAGGTGAAC
AAATTGATTCAAATATCTCTGCTGACTTTACAATTGAAAACGATATCTCG
CCAAAGGAAGGTAATGCACCGACCAGTAATAACTAAACTATTAGAGAAAC
ATGGTTATTGGCCAGTCATTCAGATCCATCTTGAATGTAACAATCATGTT
TTGAAATTGTCTTACTGAGACTTACAGAGACCTGAAAAGGTAAATTTGGT
ACAAAACTTACTGTATAACCGAGAAATGATAATATACTGTTGAACCAAAA
ACTTGCTTTAATAAGGTGTGTAATTTGAATTTCGTTTTAAACATTTAGTA
TCGACACCAATAAAGTCAAAGGATTCAAAACAACCTGAGAAGAAGAAAGA
TGTGATTAAAAAACCAGTGCTATTGATCTGTAGGTAAACTCAATCAAGTA
ATCTTTTCAGAATTTGGTGATCTTCATACTCAAGTCTTCTTATTCTTCTT
ATTCAAATCAAAACCAATTTCATTATAGTGAGGCACAGTGAGGCAAACTT
ACTTATTAAAATCTGATTTCTTAGATGACCGTAACTTCAAATTGGTTATT
GATAATCTCGATACACACCACAAAGTGTCCAATATTACAGAGAAGAACCT
GAACATTGATCTGCATCCTACAGCAAAGGTGGCAGTTTTTTATCGAGCCC
CACCAGAAGCGTCGAGCGATACGAAACCACATTGTACGATCAGTGAACTT
GACAACAGTGTATTCATCTGCACTCCCGAAGACCACGTTATACAACGCCT
GAATTTATCAGGGGGGACGAGGGCCAAAATCGTCGAACCAAAATCGTCAT
CCGGAATGGCAAACCGGCGAACAATATTGGTGTTTGAACCAGAAAACTTG
AGTTAAATTAGTTGATTAGAAAATTGGTTTGATTAGTCGGGCCTGGTTTT
CTAGTTTTAAGCTCTCAATTGTTTCCTGGAGGGAGGTTTACATAGTCCGT
ACCTACTCTAAGAACAGGGTAGTGACGTCCTGAAAAATACAAAGAGGGGG
AAAAGAATTGTTTGTAGAAAGGGGAAGTTTGGAGAGGTTCATCTAGAAAG
GAGGTTAACATATCAGTTTAAACTTCTTTGAGACTATCTTTCCAAGCTTT
CAGTTTTGCAGTCTGAAACTGAGCTAAAATCCTAAAAGTTTTCTGCTAGA
TTACCAAGCAATCTACTTTATCCACTTTTGTAAAGAGAATATTGCAGATA
AACCCTAATGCACCTCATTCAAGGGTGAATATGCTCGACTTGGGCATTCA
AGAATGCTATGAAAGTGGGCAAAAAAGCCAAAATATTTAAAGGGGGTAGA
ACATAGAGTAGGGGGTTGCTTTAGATAGGGCAGGCGATCAGGGATACCAA
CCAAGGGCCTAGAAAGATGACTTGTTGAGATTTAAAAGGAGAAGACACCA
CCCCACTGATTTGGTATCATAGCCACCGAAATCGACTACCTTTTGGCATT
TTCTCAAACTCCACGACAGTACTGCCTACTTTTGTCAAAAAGAAGCAGGC
CACATTTTTTGAAAAATATCTTTAAAATGAAAAAATATGCCCTCTTGTGG
CCTGCTTGTAAAAAATAAAGGGGCAGTGTATGTCAGTGGTCTATACCAGA
GATCTCTAGTGTAAAGGTCACTTCATTTCAAGACTGGCCTGATTGACGCG
AGATACTAAATTCGATAGTTATTAGGATTTATTTTCTGATATTTCTGATG
TATGTATTGTAGTGTATCTGTGATCAATTTTTTCTATGTTTTAATGTTAT
AGATAATGGATAAAGTTAATGGACGTCTTGGTAAATTGGTAAATTCCCGA
TGTATGTATGGGTTGAACTCCTGAAGTTGGAATGGGTTGGGGTCGTTGAT
TTTGAGAGGTTTGGGTTTGCGAAGT

Coding sequence (CDS) from alignment at scaffold_285:510372..512696-

>TCONS_00057119 ID=TCONS_00057119|Name=TCONS_00057119|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_285:510372..512696- (Clytia hemisphaerica)
ATGACCGTAACTTCAAATTGGTTATTGATAATCTCGATACACACCACAAA
GTGTCCAATATTACAGAGAAGAACCTGAACATTGATCTGCATCCTACAGC
AAAGGTGGCAGTTTTTTATCGAGCCCCACCAGAAGCGTCGAGCGATACGA
AACCACATTGTACGATCAGTGAACTTGACAACAGTGTATTCATCTGCACT
CCCGAAGACCACGTTATACAACGCCTGAATTTATCAGGGGGGACGAGGGC
CAAAATCGTCGAACCAAAATCGTCATCCGGAATGGCAAACCGGCGAACAA
TATTGGTGTTTGAACCAGAAAACTTGAGTTAATATCGACACCAATAAAGT
CAAAGGATTCAAAACAACCTGAGAAGAAGAAAGATGTGATTAAAAAACCA
GTGCTATTGATCTGTGAACAAATTGATTCAAATATCTCTGCTGACTTTAC
AATTGAAAACGATATCTCGCCAAAGGAAGATGGGAATCGAAATTGAAAGT
GAATATGTATCTTCTAAGAGAGATGACCGTAACTTCAAATTGGTTATTGA
TAATCTCGATACACACCACAAAGTGTCCAATATTACAGAGAAGAACCTGA
ACATTGATCTGCATCCTACAGCAAAGGTGGCAGTTTTTTATCGAGCCCCA
CCAGAAGCGTCGAGCGATACGAAACCACATTGTACGATCAGTGAACTTGA
CAACAGTGTATTCATCTGCACTCCCGAAGACCACGTTATACAACGCCTGA
ATTTATCAGGGGGGACGAGGGCCAAAATCGTCGAACCAAAATCGTCATCC
GGAATGGCAAACCGGCGAACAATATTGGTGTTTGAACCAGAAAACTTGAG
TTAATATCGACACCAATAAAGTCAAAGGATTCAAAACAACCTGAGAAGAA
GAAAGATGTGATTAAAAAACCAGTGCTATTGATCTGTGAACAAATTGATT
CAAATATCTCTGCTGACTTTACAATTGAAAACGATATCTCGCCAAAGGAA
GATGGGAATCGAAATTGAAAGTGAATATGTATCTTCTAAGAGAGATGACC
GTAACTTCAAATTGGTTATTGATAATCTCGATACACACCACAAAGTGTCC
AATATTACAGAGAAGAACCTGAACATTGATCTGCATCCTACAGCAAAGGT
GGCAGTTTTTTATCGAGCCCCACCAGAAGCGTCGAGCGATACGAAACCAC
ATTGTACGATCAGTGAACTTGACAACAGTGTATTCATCTGCACTCCCGAA
GACCACGTTATACAACGCCTGAATTTATCAGGGGGGACGAGGGCCAAAAT
CGTCGAACCAAAATCGTCATCCGGAATGGCAAACCGGCGAACAATATTGG
TGTTTGAACCAGAAAACTTGAGTTAATATCGACACCAATAAAGTCAAAGG
ATTCAAAACAACCTGAGAAGAAGAAAGATGTGATTAAAAAACCAGTGCTA
TTGATCTGTGAACAAATTGATTCAAATATCTCTGCTGACTTTACAATTGA
AAACGATATCTCGCCAAAGGAAGATGGGAATCGAAATTGAAAGTGAATAT
GTATCTTCTAAGAGAGATGACCGTAACTTCAAATTGGTTATTGATAATCT
CGATACACACCACAAAGTGTCCAATATTACAGAGAAGAACCTGAACATTG
ATCTGCATCCTACAGCAAAGGTGGCAGTTTTTTATCGAGCCCCACCAGAA
GCGTCGAGCGATACGAAACCACATTGTACGATCAGTGAACTTGACAACAG
TGTATTCATCTGCACTCCCGAAGACCACGTTATACAACGCCTGAATTTAT
CAGGGGGGACGAGGGCCAAAATCGTCGAACCAAAATCGTCATCCGGAATG
GCAAACCGGCGAACAATATTGGTGTTTGAACCAGAAAACTTGAGTTAATA
TCGACACCAATAAAGTCAAAGGATTCAAAACAACCTGAGAAGAAGAAAGA
TGTGATTAAAAAACCAGTGCTATTGATCTGTGAACAAATTGATTCAAATA
TCTCTGCTGACTTTACAATTGAAAACGATATCTCGCCAAAGGAAGATGGG
AATCGAAATTGAAAGTGAATATGTATCTTCTAAGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035980XLOC_035980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057119-exon-scaffold_285-1575043694:512607..512696TCONS_00057119-exon-scaffold_285-1575043694:512607..512696Clytia hemisphaericaexon
TCONS_00057119-exon-scaffold_285-1575043694:512187..512252TCONS_00057119-exon-scaffold_285-1575043694:512187..512252Clytia hemisphaericaexon
TCONS_00057119-exon-scaffold_285-1575043694:511868..511948TCONS_00057119-exon-scaffold_285-1575043694:511868..511948Clytia hemisphaericaexon
TCONS_00057119-exon-scaffold_285-1575043694:510372..511722TCONS_00057119-exon-scaffold_285-1575043694:510372..511722Clytia hemisphaericaexon
TCONS_00057119-exon-scaffold_285-1510915933:512607..512696TCONS_00057119-exon-scaffold_285-1510915933:512607..512696Clytia hemisphaericaexon
TCONS_00057119-exon-scaffold_285-1510915933:512187..512252TCONS_00057119-exon-scaffold_285-1510915933:512187..512252Clytia hemisphaericaexon
TCONS_00057119-exon-scaffold_285-1510915933:511868..511948TCONS_00057119-exon-scaffold_285-1510915933:511868..511948Clytia hemisphaericaexon
TCONS_00057119-exon-scaffold_285-1510915933:510372..511722TCONS_00057119-exon-scaffold_285-1510915933:510372..511722Clytia hemisphaericaexon
TCONS_00057119-exon-scaffold_285-1491911889:512607..512696TCONS_00057119-exon-scaffold_285-1491911889:512607..512696Clytia hemisphaericaexon
TCONS_00057119-exon-scaffold_285-1491911889:512187..512252TCONS_00057119-exon-scaffold_285-1491911889:512187..512252Clytia hemisphaericaexon
TCONS_00057119-exon-scaffold_285-1491911889:511868..511948TCONS_00057119-exon-scaffold_285-1491911889:511868..511948Clytia hemisphaericaexon
TCONS_00057119-exon-scaffold_285-1491911889:510372..511722TCONS_00057119-exon-scaffold_285-1491911889:510372..511722Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057119-proteinTCONS_00057119-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:510372..512696 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.050319	0.0244611	0	0	0.100942	0.0267406	0.0992289	0.0606547	0	0.129959	0	0.166999	0.151175	0	0.272915	1.4995	0	1.27574	1.50417	0.600984	0.586401	0.603661	0.317811	0.132149	0.0540114	0	0.776095	0.257387	0.223569	0.505997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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