TCONS_00057192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057192
Unique NameTCONS_00057192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057192 ID=TCONS_00057192|Name=TCONS_00057192|organism=Clytia hemisphaerica|type=transcript|length=1502bp
ATCTGCATGGTGTTATCTGAGTTCCTGgtAACAAAATCTCATAGTAGTCA
GAATGAAGcaattggatgaaaaaatttgttttgattgctcATCATCAAAA
CAAGAAATGTTGAAATGCAGTCGATGCCATGCTGCATGGTATTGTGATGC
TAAATGTCAGAAAAAGGACTTCAAAAGTCATAAAGGGCTTTGTAAAGAAA
TTGGTAATTTACTGGCAGAAATCAATGGTGAAAACTACCTTAATCAACAC
GAGTCAATCagaaaatttgtcaCCCAGAATTCAGAGAATGACTTTGAGCT
CTGGCAGCAAGCATTAGCAGAATTGGTGAATTTACCGGACATAATGGTAA
AAATATGTCGCATGTTTCAACCATTGTGTAATCTCTACATTCTTATTGCC
AGTCACAAAAATGCTGAACTTCCTGCAGAAGTCGCACTTGAATGGTTAAA
CAAAGCTCTCAAAATTGTGGCTTATCATACAGAACATTTTGCAGCAATAA
AGAAAGTAAATACAAGTAAAGAGGAGCAAAAAAGCTCTTCCATGGATGAC
ATTTTCCAAAGAGATGATCGTCTTTATTTTGGTGGAGATATGGGGATGGA
TGGAAAGCCTAAGCAGCTCCCAAAAACCAAATGTAACACAGAATCCTCAT
CTGAAAAAAAGTCACGTGCCTTTGATTGCAGTCATTTTGCCCGTCGCCAT
GTCCTTTTTGAGAATCAACCTAATGGTCCAGCTGATCCCTTCTTTTGTTT
TGGTGGGGAACAGAACATGCCTGAGGTCCTTGTCTTCCTTGGTAGATATC
AAGATGCTATGAACTATATCTGGCATTGGAGCGATGAAACATTCCATGAC
ACCTACACTCCAGGTGCTATCATCAAAAGGTGGAAAGATTGGGTATCAGG
TGATTTCCATTATGAAGATGTAAACAGTAAAGAAGAACTTCTTATTCCAG
AGTGGCACGTTTTTGATGGAGAACCAGAAGAAGGGAAAAATCTATTGAGa
atctATGGGGTAATAATTTTGATCAGACTGCATACACTACTGAATCCTGA
TGGAAAAGAAGATTTTAAAAAaaaaaaatcatctctcGATGATCTAATCG
ATCCCTACATTACAACAATCACAGACTCATTTTTGTATTATGTGAGTGGG
CGTGAGGAATATATTAACCGGATGACTCAATTCATATTGGCTCAAGGTCA
TGGCTGCAAGCCAGATCCAAGAAAAGAGCTTCATCGCCTTGTTTGGCATC
TTTACCACAACAGGCTGTCCCAAGAAGAAGTGGGTTATCTACTGGATGCT
TACAAAGAATTTGCTGAATCTATGAGAATGTGAATTTTCATTGCgatccc
agtcctttttttttGCTCTTATCTCTACCCCGCTTCTTTCTACTGTTTCC
ATAGCTACTTTCTAACTGTCACCATGTATCATGTATTCATCTTGCATCGc
tgtattatatttcaaaacatattttaaaatagaaaaagtcataaaatatt
tt
Run BLAST on NCBI

transcript from alignment at scaffold_286:597571..606668+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057192 ID=TCONS_00057192|Name=TCONS_00057192|organism=Clytia hemisphaerica|type=transcript|length=9098bp|location=Sequence derived from alignment at scaffold_286:597571..606668+ (Clytia hemisphaerica)
ATCTGCATGGTGTTATCTGAGTTCCTGGTAAGTTTAATCTATCATAACAC
ATATGCAGATATATACTTattttcaaaggttttattgtttttattaccTT
TTTCATACATAAAAGTACCTTGTTTGTacacgttttgtttttttaagaaa
ctagttttaccaagcagcctcagtgtttcttaagaaattggccttttgag
ccttaaatgtttcttaaatGGTTCTAAACTTTCTCAAGTGCTTCTAACTG
TTATGTAAGTACTGTATATTTCTGAAACTTTGCCTTGATTGAttggaatg
ttcttaaaaaaaacgaattaaaaaaatgttattttctcattctcagcctc
agttAGTCTGGACCCATACAAATTTTTACTCCATTTCACAAAGCTCACAT
GAGATAAAAATTAGTATGGTAGAattggagattttgaatttgccaCCAAA
AACAAACCGTTTGAAAACTGGCCAATCAGAATTTTGCTGCATAAATTTTT
CGGGAGAACAATAGACATAATTGGCCAATCAGAAGCGTTTCTACaaaaaa
ttgtagaaatttttgtccaaaactacCCGTCTACTATATCGAGTTCAGAA
AAAATTGTGAGTAGATGGGGCCCCATCTAAGCCTCagtcagcatgtttct
tagatgtttcttaatttttaggcattctgagcctcatgtttcttaaaagt
gtgtttcttaaaaaaacaaaaacgtgtaaGTCCCTGGGCCTGGGGCTGCT
GCCAGGCTGCGTGCtgtcctggggggggggggtacttgggTAAAAAGGGG
TCTCTATTGTAGGGTatcgtgagatcgggtaacttgcatcagtggaggct
aacatgcatagccctcaaatgaatgacctggcttgtaattaaaatacaaa
gttaattaaaaacaaaaatggtagagtagagctgtagAACATGTTTAAAA
ATATGAGGCAGAACTTGGGACattgcaaaatttaataaaattgttttttt
aaataaaattataatttttgaaattggagtgttcaaattttcaaatgtat
tagcaaaatttgataaaagagGTTTATTTCAATGGAACGATAAAAAAGCA
ATATTGTTACTTTTTGATCATACAACTGTAATCTGCTCTGCAGTTACTTT
TAGAGAAACTGACCCACAAATTAGTTAAAACTATTCAAGTAATTTTCCTG
GGTTTCTTCATTACACCCGgtaccgtaggatcgtctaatatcaacatgcg
tcttctaatttcgacatagctgtaggctggtcttcgaaataaaaaatcaa
acataaacaaatacataccaaagttatccatcaatcactaaattgtactc
tccctatcacatcacagattgttaatataatatgagaaatgtgaagtgtt
attattacttatatttgaaaagaaaactttaacggtagtaatcactaaaa
aactaattagcatgctttcaacgaagatgcccaaatcacaacaacatatt
gcacgcgaggaattttttagtagacctttttaccgtgaaccgaaaataat
taaaagaacccgatctccttatgaatttgaaaagagaccgggtgtgctag
gtgcggcgcctagaagtttaacggggcctcttagcgcctagagcgcatgc
ttgaaataaacaaaaaggacaggaaaccaggtcgactaagcgcgcgattt
atttttatcacatgacttgaagcgtaataaagttgtaaaatttttatgat
gggcacgagaaagttacgagaaAGTTTgtatgcgtttcgtgtgttgtgtg
aaactgcttataatttggctgcgtttttaattgaaaggattgcaatgttt
actaaacttctagtttgatggatgaacttgttctaagaatttcattcaag
gtttgttttgattattttacagatctggtgtcgaaattagaagacgcatg
tcgatattacATTAGACTATTCTACGGTAACACCATAGAAttcaaaataa
tgataaaattgTAACCTTCCCTCAATAATGCTAAAActgttacattttta
tcaatattttgttccttttccttttttgttACTGGATATATACTGCCTTG
CAATTTTAGAATGTAAAATCTATCATTACATTGCTTTTTAAAGCCATTGC
TgggttcatttttctttttttctttaactTTAAGGGTTGAATGCTCTCTG
AGAGCTGATTATTAacctcattttcattttcagtgataTGGAGTAGCAAA
GTAGCAACCTGACTACAATCCTGCCAATTTTGCCTTGAAATAGAGCATTT
TGAATATGATGACTTTGGTTATATCTTTATCATTTGTATGTTGATTTAAG
ACtatcaaaactaaaaacaaaGTTACTTGTTCACGAAATTTCAATCCCCT
TCAAAACAGTGAAAGGATAAAAAATCCAACTTTAAGCTTTGAATAGTGtt
gcaaatttttcattttgtaaaatttctacttgttttaattttataatttt
tttgttatttagtTAAACTACTTTTACAATTGTATATATTGTGTTATCTT
GAATCAATTACATGACTGGAAAGagaatttaattttagaaaggttgtgag
aaaatgaaatttgacaTCATACATGAAAGAATAAATATGTAACTTAGAAG
CTTCAttttgtaataatattttattttatttaatatttaaaacatttcgg
TCTTCATCCAAAGACCATCATCAGTTAAAAAAACAAGTAAGAAAGTTATG
TACTCATATTTATTATACATGAAAgaattttattgataaaaatgtaacac
aaattggaatgtcccaaaaacagccaaattctGCCTCATATTTTTGAACA
TGTTCTGTACAATATCGATGATATACATGTAGATTGATAATTAATAATCG
ATTGTATCAATTGCATCTATAGCAATCAATAGCTAAGAGGTAGAAAAATT
GTGAATATCAATTAGCTATCGATTAAAGAATCTAATCAATAACTGATCCG
TCGGTTAATATCAATTATTTATCAATTTGAATTGATTAGTGATTTTATCG
ATTACAACCGTCTGGAAGAGGTGAAGAAAACTGATTGCTGATTTTAACAT
ATTTTAattgttgagaaatttttgtttttttgcagtATTTGCTGAGTACC
GAAGTTTTTCTGATGTCATTAACCCCTTATTAAACCCTTCTTTGGAGGAG
GACTTACCTTAAATTACACAAATATCACTAGTGATTTTATTAacacaaat
tgaaaaaattacatgttaataaaaaccccctttaTTAAAACCAGTCactg
tttccttgaaaaagtaGAAGAGTTTGTAGAAATTTTTgtgtgttaatttc
aaggccttTAATTACTTGTCTTATTTGTTCCCGTAATAAAGGTACAGTAG
GAGAACACGAGTCTTGATTTGTTTGAATTTATAGGGTATTTCTTTACTTT
GAGCAGCTAAgggaaatcttttttaaatgagCAATCCGGCCCTTTCTATC
TATTCagatttattttgataaaataaagaaGGAGGACTAGGGACTAGAGG
ATTAAAAGAGAGCTTTTGACATCAGATCAACTTTTGGTGTATCAAAGTGT
ACACGTATTATGTTCATTTTTCCTGAATGCATGAAACTGAAAAAAGCGAA
AGTGTCTATCTAAACCTATTTCAAGCTTGTTTTTGATTgagattattttt
attttttatttgtccTAGTGTTGTAGTAAAAATCTCAGTAAAGAGAacga
aaaattttgaccattaaccttttttaaataaataggtAACAAAATCTCAT
AGTAGTCAGAATGAAGcaattggatgaaaaaatttgttttgattgctcAT
CATCAAAACAAGAAATGTTGAAATGCAGTCGATGCCATGCTGCATGGTAT
TGTGATGCTAAATGTCAGAAAAAGGACTTCAAAAGTCATAAAGGGCTTTG
TAAAGAAATTGGTAATTTACTGGCAGAAATCAATGGTGAAAACTACCTTA
ATCAACACGAGTCAATCaggtaaaatttaaaatatattttgcaCTTTTAT
GGTCAAAGGAAGTGAACATAATATTAGTAATAAATTTTTGTATGGTTTTT
CTTTGTTGCAACACGCCAAgcatttatatatttttatagtAAATTTTCAT
GAGAAATTTGATATATGGATTTGatataaaaaactttcaagcatcaggaa
ataaaaatgaaataagctttttccatatttttagaaaatttgtcaCCCAG
AATTCAGAGAATGACTTTGAGCTCTGGCAGCAAGCATTAGCAGAATTGGT
GAATTTACCGGACATAATGGTAAAAATATGTCGCATGTTTCAACCATTGT
GTAATCTCTACATTCTTATTGCCAGTCACAAAAATGCTGAACTTCCTGCA
GAAGTCGCACTTGAATGGTTAAACAAAGCTCTCAAAATTGTGGCTTATCA
TACAGAACATTTTGCAGCAATAAAGAAAGTAAATACAAGTAAAGAGGAGC
AAAAAAGCTCTTCCATGGATGACATTTTCCAAAGAGATGATCGTCTTTAT
TTTGGTGGAGATATGGGGATGGATGGAAAGCCTAAGCAGCTCCCAAAAAC
CAAATGTAACACAGAATCCTCATCTGAAAAAAAGTCACGTGCCTTTGATT
GCAGTCATTTTGCCCGTCGCCATGTCCTTTTTGAGAATCAACCTAATGGT
CCAGCTGATCCCTTCTTTTGTTTTGGTGGGGAACAGAACATGCCTGAGGT
ATTTGTATATCCAATTAATGTtgacttattttgaaaatttatcttGAAGC
TTTTTGAGTTCAGACACAAGATCGTCTCTGGTGAAATGTGCGATGACTGG
AGCAAGAAAAACAACAGATACAGAAGGACTGATCTACACTCTGCTGCGAA
TTCACACCTAACACCTGAATGAGTCtaattaatgtcataaaacacTTTAA
CTTTCTGCCTCAGCTATTGTAGCTTTGCAAAGTTTTGAATCACTCTAAAA
AAACACTTCAGTAGTATTTTGTAGGCATTAATTTGACAACTAGAGAATAT
GATAAGGATAAAATTAATATAATTATTAACAATAGTTCCTTTTTCCTATC
AAAAACTTTCCATTCTTACAGGTCCTTGTCTTCCTTGGTAGATATCAAGA
TGCTATGAACTATATCTGGCATTGGAGCGATGAAACATTCCATGACACCT
ACACTCCAGGTGCTATCATCAAAAGGTGGAAAGATTGGGTATCAGGTGAT
TTCCATTATGAAGATGTAAACAGTAAAGAAGAACTTCTTATTCCAGAGTG
GCACGTTTTTGATGGAGAACCAGAAGAAGGGAAAAATCTATTGAGGTATG
TTTGCTTTAAAGAGATTTGGGGAACTACAAACTAACAGCTTCTATTGTTT
ATTTAGTATAATGGGCAGTATAAACCTTTTAAACTAGTGATGACCCTGGC
CTCTTATTTAGAGagataattttgagattttgtttATAATATGGAATTGT
AAAAAAGTTAGTAGATATTAGtgttcttttcatttttgtcattattctta
aatgtgtcaaaaaaatggaatgttgatgaaaaagaaaactcaATTATTAG
TGCAGGCTAGTGATCTGTGTATCTTTGAAACTTtcctaaatttttctttt
tatagaatctATGGGGTAATAATTTTGATCAGACTGCATACACTACTGAA
TCCTGATGGAAAAGAAGATTTTAAAAAGTATGTACTGTATAATATACAAT
CAACATTTAAGTTAGCCTTTCTCTTTCGAATGCGGAAAAGCTTGCATTGA
TATAACACGCATGGACAAATTTAAAACTAGAATAAAATCTACAATAAACT
GGCCTAAAGATTGCGCTAGAAACACTGTGTAGCAACTGTAAGCAATTGTA
GTTCTTTATTTCTGAATATCGCTTGaattttttctcgaattttcttaagc
acttttttattctatttattttactgtTTGAGTGTATGAACctttttttt
catagaaaaaaatcatctctcGATGATCTAATCGATCCCTACATTACAAC
AATCACAGACTCATTTTTGTATTATGTGAGTGGGCGTGAGGAATATATTA
ACCGGATGACTCAATTCATATTGGCTCAAGGTCATGGCTGCAAGCCAGAT
CCAAGGTGAGATAGACTCTTTTATAGCTTAAAAATAGCTGAAAAGGTCTA
CATAACCTTAAAAGAAGAATACTGCATAcgtttttggggtaaattttcGA
GAGCATCATTATGCTGTTAAAAAAATTAGCGCAGATGTTGTACTCATTAT
GCTACAAATGTAGAATTGCTTAACTCTgtttttgctatattgtgcacgta
cctttaacttctaccccaagcgaaaatttgctataaaatttgctatataa
atcacatcttcaaaccgatgattttatcaaaatgaccttgaatggtttgg
cttgaagcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccga
aaaaagatttttttgctgTGCACAAATGTGTTGTGTGTAGACAACACACA
ACAGCCTTGTGATTGacccaaatttcaaatttaaaagtcaataaTTATTT
AATTGCTTCAATTTCAGAAAAGAGCTTCATCGCCTTGTTTGGCATCTTTA
CCACAACAGGCTGTCCCAAGAAGAAGTGGGTTATCTACTGGATGCTTACA
AAGAATTTGCTGAATCTATGAGAATGTGAATTTTCATTGCgatcccagtc
ctttttttttGCTCTTATCTCTACCCCGCTTCTTTCTACTGTTTCCATAG
CTACTTTCTAACTGTCACCATGTATCATGTATTCATCTTGCATCGctgta
ttatatttcaaaacatattttaaaatagaaaaagtcataaaatatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036041XLOC_036041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057192-exon-scaffold_286-1491911889:597571..597597TCONS_00057192-exon-scaffold_286-1491911889:597571..597597Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1510915933:597571..597597TCONS_00057192-exon-scaffold_286-1510915933:597571..597597Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1575043694:597571..597597TCONS_00057192-exon-scaffold_286-1575043694:597571..597597Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1491911889:601356..601589TCONS_00057192-exon-scaffold_286-1491911889:601356..601589Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1510915933:601356..601589TCONS_00057192-exon-scaffold_286-1510915933:601356..601589Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1575043694:601356..601589TCONS_00057192-exon-scaffold_286-1575043694:601356..601589Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1491911889:601805..602318TCONS_00057192-exon-scaffold_286-1491911889:601805..602318Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1510915933:601805..602318TCONS_00057192-exon-scaffold_286-1510915933:601805..602318Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1575043694:601805..602318TCONS_00057192-exon-scaffold_286-1575043694:601805..602318Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1491911889:602692..602915TCONS_00057192-exon-scaffold_286-1491911889:602692..602915Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1510915933:602692..602915TCONS_00057192-exon-scaffold_286-1510915933:602692..602915Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1575043694:602692..602915TCONS_00057192-exon-scaffold_286-1575043694:602692..602915Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1491911889:603226..603297TCONS_00057192-exon-scaffold_286-1491911889:603226..603297Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1510915933:603226..603297TCONS_00057192-exon-scaffold_286-1510915933:603226..603297Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1575043694:603226..603297TCONS_00057192-exon-scaffold_286-1575043694:603226..603297Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1491911889:603576..603725TCONS_00057192-exon-scaffold_286-1491911889:603576..603725Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1510915933:603576..603725TCONS_00057192-exon-scaffold_286-1510915933:603576..603725Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1575043694:603576..603725TCONS_00057192-exon-scaffold_286-1575043694:603576..603725Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1491911889:606388..606668TCONS_00057192-exon-scaffold_286-1491911889:606388..606668Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1510915933:606388..606668TCONS_00057192-exon-scaffold_286-1510915933:606388..606668Clytia hemisphaericaexon
TCONS_00057192-exon-scaffold_286-1575043694:606388..606668TCONS_00057192-exon-scaffold_286-1575043694:606388..606668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:597571..606668 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.97291	9.74549	35.7703	37.3983	9.2278	7.91568	10.5102	11.828	6.03504	7.38877	4.4738	3.45199	3.67627	3.2021	5.01577	5.54974	5.08214	3.88508	1.72125	2.02594	2.75985	2.43144	58.4544	49.9209	24.6918	31.9406	3.88568	4.81509	32.6523	37.8437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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