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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057221 ID=TCONS_00057221|Name=TCONS_00057221|organism=Clytia hemisphaerica|type=transcript|length=2156bpRun BLAST on NCBI protein sequence of TCONS_00057221-protein >TCONS_00057221-protein ID=TCONS_00057221-protein|Name=TCONS_00057221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=636bp MDQPQVTYRYPLIRYFSLFAIALVIDMLLSIFLWIGKPDKTEIMHTIKHYRun BLAST on NCBI transcript from alignment at scaffold_286:993834..1004899+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057221 ID=TCONS_00057221|Name=TCONS_00057221|organism=Clytia hemisphaerica|type=transcript|length=11066bp|location=Sequence derived from alignment at scaffold_286:993834..1004899+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_286:993834..1004899+ >TCONS_00057221 ID=TCONS_00057221|Name=TCONS_00057221|organism=Clytia hemisphaerica|type=CDS|length=26754bp|location=Sequence derived from alignment at scaffold_286:993834..1004899+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057221 vs. Swiss-Prot (Human)
Match: ABCBA (ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2) HSP 1 Score: 307.375 bits (786), Expect = 1.599e-92 Identity = 188/448 (41.96%), Postives = 264/448 (58.93%), Query Frame = 2
Query: 752 RLISLLKPESLKIFVGTLGLIGSTVSNMLAPLWFGKVIQAAATGTMHD----LNKQTLILFLIYAVGGFAAFFRAWLYTLAGQSLVARIRKLLFAQIIAQEVAFFDTSRTGELMNRLSSDCQVLQNALSVNISMLLRYTLQIFGSIGIMFYVSPKLGGVLLAVIPLVGILAQRYGAYVRDVQKTFQDELAKSASSAEETISAVRTVRSFSQEPKARAEYDLAIDSSFNAGAKLAFA-SGIFNAVIAVLTTGAIVL-VLWYGGKLVHDGSMNVGNLTSFILYALNVAMAFAFLSSLYGDFMKAVGASIRIFELLDRSPELV--PGTIQMNDA--KVSMSFEDVYFTYPARPDNQILKGFSFEMNPGETIALVGPSGGGKSTVINLLERFYDPAQGLVKLGEHPMFDIDTDWFRKRVGIVSQEPVLFAKTIAENIAYGRD----ATKEEV 2053
+L+ L PE ++ L S+V +M AP + GK+I T D L + L L ++ G A R +L +GQ +V R+R LF+ I+ QEVAFFD +RTGEL+NRLSSD +L +++ N+S LR Q I +MF+VSP L +L+V+P V I+A YG Y+R + K QD LA++ AEE I VRTVR+F +E +Y +D K AFA +G F A L+ IVL VL+ GG L+ M VG L+SF++YA V ++ LSS Y + MK +GA R++ELL+R P+L G I +N+ + ++ F++V+F YPARP+ I + FS + G ALVGPSG GKSTV++LL R YDPA G + L H + ++ W R ++G VSQEP+LF+ +IAENIAYG D T EE+
Sbjct: 159 KLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEI 603 The following BLAST results are available for this feature:
BLAST of TCONS_00057221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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