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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057230 ID=TCONS_00057230|Name=TCONS_00057230|organism=Clytia hemisphaerica|type=transcript|length=507bp
ccctgaccctacctaactgttagttaatcaattccaaacaacaaaacccc
cggaaaatttaaaatgtcggaatgagcaatagacagccttcttttgagac
cttgtaattatccttttccGGCGAAGAGTCGTCAGTCGAAAGAGCCAtat
ctgtttcaatttttttttcaaaacatcaaagATGGCTGCATTAAGACAAG
GTGTTAGAAGGATGACAACCTTAGCTGGTCAAGCCTTGAAAGATGCAGTT
GCTGCGGAAGAAAAACATGCCAGAGCCACATCGATGCAATGGAAGAAAAT
CTCTTTATTTATTGCCCTACCTGGTATTGGATTATGTGCCTACAATGCCA
TCATAGATGAACTGGAACACATGAAGCACGCCCACCCTGAATTTGTTGGC
TTCGAACATTTGAGAATCAGAAAAACTtcTTTCCCATGGGGCGACGGTAA
TCACTCACTTTTCCACGGACACAACAATCCTTTACCCGAAGGTTATGAAC
ACTGAAC Run BLAST on NCBI transcript from alignment at scaffold_286:25449..34467- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057230 ID=TCONS_00057230|Name=TCONS_00057230|organism=Clytia hemisphaerica|type=transcript|length=9019bp|location=Sequence derived from alignment at scaffold_286:25449..34467- (Clytia hemisphaerica)
CCCTGACCCTACCTAACTGTTAGTTAATCAATTCCAAACAACAAAACCCC
CGGAAAATTTAAAATGTCGGAATGAGCAATAGACAGCCTTCTTTTGAGAC
CTTGTAATTATCCTTTTCCGGCGAAGAGTCGTCAGTCGAAAGAGCCATAT
CTGTTTCAATTTTTTTTTCAAAACATCAAAGATGGCTGCATTAAGACAAG
GTGTTAGAAGGATGACAACCTTAGCTGGTCAAGCCTTGAAAGATGCAGTT
GCTGCGGAAGAAAAACATGCCAGAGGTAGTAATTTTTTGATAAACTATCA
TTCACTCATTCATTATTTTTTGACACCCATAGATATAAATGGCAAGACAA
GATAACCAATAGCACAAGGCTCGAAATAACGATTTCAAGTGGGTCGGACA
AAATGTCCGATCAGGGTTGCTTTTGCTTGAAAATTATGATTTTTGGGTCG
GACATAAAGCCATTTGGGTCGGACAATGACAATGTCCGATGTCCGACCGT
TATTTCGAGCCCTGGATTAGAGCAGCAGTTGGGTGTTTAGGATAAAATGT
AAAAAGGGTGATCCTTTCAGCGATGACATGCTGAAAGTCAGTGACCACCT
ATTGCTATCGATTTTATTGGTGATCAAATACTTGACTCCAGGCAGTCAGG
GCCAGTGCCAGTCAGGGCCTCCTTTCACACAGGTGTTACGCGTAAGCCAA
ATCGCGTATTACGAACAACCTCTAAATTGCAGAGTACAAGAGAAAAAAAT
GGAAATTCAAAATGGCGGCCAAGCCCACGCTGATAACTATCAAAAATCTT
TGTTTTTCAATCAGCTATTTTGGTTATGTAGGTTTTAAAATCCACCACAA
GTAATGAACCTCTTATAGCTTTATCTGAATAAATCTGGTTGAAAACCTTC
TGTCAGGTTTCATTCCGTACGTTTTTTATCCACGCGGTGAACCGGTTTCC
CTGATTTCCTGATAATTAAAAATTGGAACTTTCCTGTGGGCGTACCGCCA
TCGCGAAATATTTTTCGTGAAAATTTACCGTATTCTAACGCTGATATAAT
CTAGATAGGAAACAAATATTAAATTTGATTCTTTTTTTGTTCGTATTTCT
AAATTTCAAGATAAAAAGAACTATGTCATCTGGGGTAATAACGGGACACT
TAAAATGACGGGGTAAAAACGGGACACCCAAAATAAAGAACAAAGAGTTT
AAAAGGATGAACTCAAATTTATGCCCCTTAAAAGATCATTTATAAGGCTG
TAAAAAAAATCCATACTTTGATCAGCTTCATTCCTCTACATCAGAATACA
CCACGATGTTTCTTGGTGGTTGAAAACGTTGATTTTTCCTAGAACGCTTT
TTTCTCGACTTAGAATAAACGCCGTACTAAATGCAGGCGCTACATGTTTG
GGTCATCGAGACTAGTAAACAACCCTATTTTGACCTGCCCAAAGTCGCAA
GTTTGTACAGGGCCCCGTTTTTGAAAAAAAGGTGTCCCGTATTTACCCCG
TGAAAATTTTTCTATGTTGGGGTAATAACGGGACGCGTCCCGTATTTACC
CCAGTCTATATTTGGCGCGCTGGGGTAATCACGGGACGCCGTTTCACGCA
AGTCTAAGTTTAGTTCATGTCCCGTTTTTACCCCACTAGGCAGAAAACAA
CGAGGGGTAAATACGGGACGCGTCCCGTTTTTACCCCGGGGGTGTCCCGT
TTTTACCCCAAAATCCGGGGTAATTACATTACGTGAATATTTTGCGAAAA
ACTAAAAGTCATAAGTTTACACCATTAAGAGGGTTGATAGATGACCATTA
GAGGGAGTTGCTGGCCAAAAATCATGATTGTAGCTTTTGAAGTTCCTGAG
ATATGGAAAGGTTCGTCGACTTCGTCCCGTTTTTACCCCAGATGACTATA
TCTATGAATTATTTTCTTTAACAGGCGTTGAATCAACATTGACATGTTAA
TGATGTCATAATCAATGCCGTGCATATTTTGTCAGTTTCATTGGATAAAT
ACCACTAAAATATACAAGATAAGTAAACATAAATTTATCGCCCGCGAGCA
CGGTTTAGCTAAGCGCATCTCTCTTATTCATTATCTAAGAATTGGAACGG
GCAAAGATTACCGCGCGGGCTGATAGCGGACAAAGNACCGCACGGGCTGA
TAGCGGACAAAGGTTTTTTGAAGATATTTTCAGTTATAATCCAAGGTAGA
ACAAACTAAACATAGAAAGGGGGTATTTTTTAGTGCTCTACAGTATACGA
TGATCGGTATTTTTTTTGAATTCTATGTTTAGATTTTTCTACCCAGCCCT
GTTGCTATGTACGCGCGTCCTGTTGCTAAGACCTTTGCTTGAAATTGAAA
GCGAAACCAAAATAATTTAGCGCACACTGCCGTTTGTGTAATATCGATAA
AATGAAATGAGGTCCTGACTGCCGTACATAACAACGGGGCTGGGTAAAAA
ATCTAAACAAAGAATTAAAAAAAAGAAAAGGCTAATCATATAGAGCACTA
AAAAATACCCCCTTTCTAGTTTGTTCTACCTCAAATTATAACTGAAAATA
TCTTCAAAAAACCCTTGTCCGCTATCAGCCCGCGCGGTACCGTGGAGTCG
TCTAATATCTACATCTTCTAATTTCGACACCGGATCCGGATCTGTAAAAT
AATCAAAACAAACCTTCAATGAAATTCTTGGTATCATTCTTATCGAACAA
GTTCATCCATCAAACTAGAAGTTCAGTATTGCAATCCTTTCAATTAAAAA
AGCAGCCAAATTATAAGCAGTTTCACACAACACACGAAACGCATGCAATC
TTCCTCGTAATTTTCTCGTGCCCATCATTAAAATTTTACAACTTTATTAC
GCTTCAAGTCACGTGATAAAAATAATTCGCGCACTTAGTCGACCTGGTTT
CCCCATCCTTATTGTTTATTGCAAGCACGTGCTCTAGGCGCTAAAAGGCC
GCATTAAACTTCTAGGCGCTGTTTTATTTCGAAGACCAGCCTACAGCTAT
GTCGAAATTAGAAGATGTATGTTGATATTAGACGATCCTACAGTAATCTT
TGCCCACTTCAATTCTTAGATAATGAATAAGAGAGGTGTGCTTAGCTAAG
CCGTGCTCACGGGCGATAGATTTATGTTTACTTATCTTGTATATTTTAGT
CGTATTTATCCAATGAAAAGGATATTGACAAAATAAGCATGGCACTGACA
AAATATGCACGGCATTGATTATGACATCATTTTAATATGTCAATATCGAT
TCAACCGTTAAAGAAAATAATTAATGAATAGTTCTTTGGCGAGGGGAATT
TGATTCTGTTTACTGTTGACCGCCCTGCATGCTCTTAGGCCGCCGCTCAA
AAAAGTTCATTATTTCTTAAAAACTCATTATTTTCTTCTTTTTCTGTGCC
AAGCTATCCAAAACACTCAAAGTGAATAAAAAATAACATCTTCGCTAATG
CGCCTCGAGTAAAAAACATGGTTCCAATCACGTCCGCGAATGGGGCAGGC
ATTCCTTTAAAGCAGTGGGCTACAAGGGCGTTTTAGAAATTTCCGTTTTG
GACGCGTTTCAAACGCGCATGTCATTTTGATTCCGAAAGTGAAAGCAGCT
CGACTGGAGATGGGAAACACCAGGTAGGAATAATAAATAATGAGATTTTG
CCGCATCAAATATTTTTTGCAACGCAACGGTAAACAGAACATCAAATTCC
CCTCGCCTTTTATCGTGAAATTTAGAAATATACAAACAAAAAAATAATCA
AATTTAATGTTTCCGATCTAGATTTATTAGCGTTAGAATACGGTAAATTT
TCACAATCGCGCCCATGGGAAAGTTCCAATTTTTAATTATTGGATAATCG
GGGAAACCGGTTCACCACGTGGATAAAAAACGTACGGAATGAAACCTGAC
AGAAGATTTCTTTCTTTCTTTGTGAGAAAAATTAGGGGTCATTTATTAAA
ATTGGTTAAGTATTTCCAAAGAGTCGTCTGCCTACCCCACCTCAACAAGT
AGAAAAATTTTTCAAAAGCACTAAAAATTGCGGATGAAATCTAGCCTTCC
GCGTGACGTGGCGTGCAGAGCTTTGCTGGCAAGGCACGATCTGAAAATCG
GTCCGATGACTGTTAAACTTTGGTTTATTGCTAATGAGCTGGAAATGATA
GTTAAAAACAAATTTTAGCACTAGAAAGCTGAAAAATTTGCAATCTTAGT
CGAAAAATCACAATTTCTTCTATTTTTCGAAATTCCCGATGGCCTTTAGA
TTTTCAAATAAGGGAGAAGACACCCACCTAAATCTGTGACCAACAGATTG
GCTATTTCCCAGAAATTTTGCCAGACTCCATCACTGATTATTATTATTAA
AATGAATATTACAGGTTGTAGGCACTCAGTGGGCCTCTAAACCGATCTCA
ATTAACAAATTTTGTGTATCGAATTTCTTTGGACGGCTTTTTCATGCTTC
TTTCAACTTTTCTTTGAAGCCTTTTATGTAAACAGCAGCTACCACCTCAG
ACGGCAATTTATTCCACGTAGGAATGGTTCTGCAGGCTTTTCCAGGAAGA
AATAAGTAGGAGAGCGACGAATCACTCACGTAACAAAGAGAAGGCCTGTT
TCACTCGCAAACTTTTTACGAAATCGCGCACGTAAACCAATTTTAGCATG
CGCGATTTAACAAAACTTCCTTAGATATTTTTCTATAGAATCAAAGTATA
ATTGAGATTGACAAGCATTTTACTAAGTGCGAGCGCGATTGCGCACGTCT
TATTGAAAAGCATGTTCTGTTCTAGAACGACTTTGTTTGCAGGTCGCTGA
ATCAATCACCAGAAATGGTCTAAAGACTGGTTGCTTCAGTCCATCCAGAC
AAGTGCCATGTACTTACAATCGGAAAGTTTACAAACATAAAATATGCGCA
TCCATATACCTGGAATCACTATAATAAGCATACATCAATGTTCTTAGCCA
AATTTTCTAGAAAAGTGCTAGCAAGAGATATTTCGGGTCCCATATCTTCC
AAAGGACTTTTCCGTTTACCTTGAAATTTGACAACCTTCTTAATCTAAGG
TTGAACTACCAATGGTGTAAAAATGAACCTTGTAGCATAAGTAGAAAAAA
AGCTCAATTTTTGCAATCGCAAATTTAACCGCTAAAAATTGCGAATTTTT
CAATCNACAGTATCTCCAAAGTTTTACAATTGGCTCTTCACCTGGAAATT
GAGTATGATAAATATATATGTAGCGTATAAAAAATATGATGTTCATTAAA
AATACTCAGACTGGTTGTAACTAGAGACTAGAAGGCTAAAAGTAGATTTG
AATAATAGATTTGATCAACTCGTTGAGTTTATCGTTGTTTTCTTCATCCA
TTTACATTTGCAGAATTGTTTTTACTTTAGTGTTGATCAATTTTTTAAGA
ATGGGGCAGTTTGGGGCAGGTCCAATAGTATGAAACTTAGATTTTTTTTA
ATTTTTGGATATGTTAAGTACAATGAACTGAGTAAAATCCCAAAATATTT
TGGTCTGAACATCCATAATCGGATTTATGCCAATTTGAAGTTTTTGACAT
TTTTGGGCATTGCATTACTGTCCCCATGGAACCTTCATATAATATCAATG
ATACCAATAATGCCAATGCATCAACACTTTTAATTGCACTGTTCAAAAAA
GATAAACCCCTGTTTTTACTAAAAATTTGGAGATTGGATGTTTTCTAGAA
AAGTGCTAGCAAGGGATATTTCGGGTCCCATATCTTCCAAAGGACTTTTC
CGTTTACCTTGAAATTTGGCAACCTTCTTAACCTAAGGTTGAACTACCAA
TGGTGTAAAAATGAACCTTGTAGCATAAGTAGAAATAAAGCTCAATTTTT
GCAATCGCAAATTTAACCGCTAAAAATTGCGAATTTTTCAATCAAAAATA
CATTCAAATATGGCGCTTTTGATTCTCTGAAACAAGCAAAGAATTTTTGA
AATTATATCAAACTATCAAAAGTCACAGGCATTCTTTTTTCCACTGCCAA
TTATATCTGGATACACTTTAGTTTGAATTTAGTTATAGCGTTTTTTGTCT
CCGCTGCAAATTATTTTGAGACAGACTTTAGAGCACATTCAAGATTGGCC
AGGTCCGGTTCAGACCGGTCAAGTCCGGTTTGGAACGGCCAATAATGGCC
AGGTCCGTTTTGTCAACAAAAACGATGGTGTTTGGCCAATGAAAGACTGG
TTCAGACCGATATGGACCGGTCCAGGCCGATCCAACCGGTCCAGAACGTT
TTACGGAAGCCGAAATACAAATTATAAGCACTTGACTCGCTTGCTCTTAT
GAATCCATTTAAAAAGATAGTTAGAATCCTCCTCAGAATAGAATTGCACC
GGTTCCCTTCGTTAGTTTATTTAGACATTTTAGACATCCCTGTACCATTT
ACATATCTTCCCTGTTAAAACTTACCTGTCAATATTTTTCTTCGTATTTC
ATACACAGCTAGTCAAGTAACACCAAAACCAAAAGGAATACCAATTGTTT
CGGCCTTTTACTAACGACTGTACAATCTCTCAAAAAGGAACAGTTACTTG
CCTCTTCCTTTGTTGATAATCCAATAATATTACAGTAATCTTGACACTTA
TAATCTTTATCTTTCAGCTCAAGGTTTATCTTCAAGCTCGTGAAGGTTTT
TACTCTAGTGAAAACATAAAAATGAAAATACTTCTTCCTTCTTGCTTTTG
TTATGGTTCTTTTCAGTTTGCTTTTGTTTTGGTTTTAGAGTCAGAAACTT
TTCAAAACATTCGAAATTCTTTTTTTATAATTTGATCAAACAATTCTCTG
GAGCTCATTCGAACGTTCTCTGGAGCTCATTCGAACTTTTTACAAAAAGA
TTCGAAAGTTTTTGGGCACTCGAAATTGTAAACAAAAAAATACCTTCATA
CAAAAAGAGTTGCTTGTTTGTTTTCAGACCGGACTTGGCTGAATTGGGTC
GATTTCGACCGGTCTAGATCGGCCTTTGTTTAGAGAAAAGATTTTAAAAA
ATATGGCTCGGATAAGATCGTCCTGGATTGGCCAAGATCGGTCAATATCG
ACCAAATTTGGCCAGGAACGGTCCAGACCGTTCCATATCGGCCAAAAATT
CGGCTTTTTATTAAGGATCGGCCCATTTTCAATGTGCTCCAAATCGCTAG
CAGGGACACAGTTGTTCTTAAAATTTAGGTAATTTATCATGGTTTTTGGT
CCTTTCAGGGACATCAAATTTATTGGAAAAAAAGGTCTGATTCGATAATT
AAACACCTTTATTCTATTTCTCCAGCCACATCGATGCAATGGAAGAAAAT
CTCTTTATTTATTGCCCTACCTGGTATTGGATTATGTGCCTACAATGCCA
TCATAGATGAACTGGAACACATGAAGCACGCCCACCCTGAATTTGTTGGC
TTCGAACATTTGAGAATCAGAAAAACTGTAAGTACTCTTCCTTGCTCCTT
GTCTTTGATTCATTATAATTTTGTATAACAATCCCAGGTTTAAAAAACGT
GTTAGTACCCAGTAGTACCCTTAATGAACACATGAAACTCGAACTCACTC
TATCAATTTAGCTAACAGTTTCAAAGACACACATAAAAATAAAATTGACT
GCTTACGTAATTGATTATGAAAAACCATAAAAGATAGTAGCCCTCCTTTA
CAGAAGGTAGATGGGTAAAGAAAATTCGTTAACTCAATAAAACTTTGGGA
ACAAAACTTCTCTCTCAACAAACTTATTTTCCTGCAAGTTTCAGGGTTCT
TTCCATAAAGAAAAATAGTTCCCGGCGAAATTTTAAACACCACAAATGAT
TTTTAAGCGTTAAGTTGGAAAGTGGAGTTTTAACTCTGAGTTTTCACATG
AGACTTAAGACTTAGCACCTTAGGATCTCAGGATTTAAAAGGTCAAATTT
GCTCGAATAAGGCTTGGAATATAGCCTAGAAGCCATCAAACCCCTCTAAA
ATCGAAATCTTCAATGAAAGAAAGTGGAAGTGCTAAAAAAGCAATTCTCG
CCCGAACTTTAAATTCTGAAAAATGTTAAAATACACTAAAATCTCAATAC
AATATATTTCAACCATGATTGTAGACCCATATTTTCAAGGCTAAAAATAT
TGAATAATTTTCACAAATTACAAAGTTGAACATCTTTTTAACGTGATCTA
CCCTCTGAGACATTACATTGTGTTTTTCTGTAACACGGGACGGTAAGGTT
CTTCATTCTGACTGACTGACTGTGTACGTGGTATGGGGGAATTTGTTCGT
TTTTTTGAGGCCGCTCAATTTTTTTAGTCAAAGCACTTGTTATACATTTT
TGGAAAGCTAAGGGGTAGGGGAATCAAAATAACATGGGTGCCAATTTTTT
TTCGGACACTTTGGTGTTTTTTTCGGACAAATATGACGATCTCAGGCAAA
AAATAAGGTCAAAATTTAATGAAAACTTTAGCTTGAGAAAATAGAGACAT
GTTGTATATTTTTTGAAAACTCTCAAAAAGTTAAGATTAGAGATATATCG
CGAGTATAGATGATTTCTCTACCTAACTTGAGACATTAAGCTTCAAAAAG
TGCAAAAAGTGGACAAACTAGCTGTTTCTGGCTGAAAAAACACTATTTTT
AAGGGTCAATATCAGTGCTTTGACAAAAAAAAATCGAGCGATTTTACAAA
TTTGCCCCTACTGGTAAATCAACATTTTTATCGTTTTCGATTTACGGATC
AGAACTGCGGTTTATTCCAATTTAATTCAGTCACTTTACCGTCCTCAAAA
GTGCAAATACATAAACTCGCTAATTATCAAAAGGGAGGGATTTTTTAATG
AGAAAACGGCAAAATCTAAATTGGTGGGTTACAGACCCGTCTGGACGAAT
CCATATAATATAACCATGCCAACACAAGAACAGTCTCTTAAAAGAATCAA
GAATATTAATCTATTTGTTCTTCTTTTTCTTTTTTTTAGTCTTTCCCATG
GGGCGACGGTAATCACTCACTTTTCCACGGACACAACAATCCTTTACCCG
AAGGTTATGAACACTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057230-exon-scaffold_286-1575043694:34193..34467 | TCONS_00057230-exon-scaffold_286-1575043694:34193..34467 | Clytia hemisphaerica | exon |
| TCONS_00057230-exon-scaffold_286-1575043694:27041..27192 | TCONS_00057230-exon-scaffold_286-1575043694:27041..27192 | Clytia hemisphaerica | exon |
| TCONS_00057230-exon-scaffold_286-1575043694:25449..25528 | TCONS_00057230-exon-scaffold_286-1575043694:25449..25528 | Clytia hemisphaerica | exon |
| TCONS_00057230-exon-scaffold_286-1510915933:34193..34467 | TCONS_00057230-exon-scaffold_286-1510915933:34193..34467 | Clytia hemisphaerica | exon |
| TCONS_00057230-exon-scaffold_286-1510915933:27041..27192 | TCONS_00057230-exon-scaffold_286-1510915933:27041..27192 | Clytia hemisphaerica | exon |
| TCONS_00057230-exon-scaffold_286-1510915933:25449..25528 | TCONS_00057230-exon-scaffold_286-1510915933:25449..25528 | Clytia hemisphaerica | exon |
| TCONS_00057230-exon-scaffold_286-1491911889:34193..34467 | TCONS_00057230-exon-scaffold_286-1491911889:34193..34467 | Clytia hemisphaerica | exon |
| TCONS_00057230-exon-scaffold_286-1491911889:27041..27192 | TCONS_00057230-exon-scaffold_286-1491911889:27041..27192 | Clytia hemisphaerica | exon |
| TCONS_00057230-exon-scaffold_286-1491911889:25449..25528 | TCONS_00057230-exon-scaffold_286-1491911889:25449..25528 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:25449..34467 - |
Blast
BLAST of TCONS_00057230 vs. Swiss-Prot (Human)
Match: CX6A1 (Cytochrome c oxidase subunit 6A1, mitochondrial OS=Homo sapiens GN=COX6A1 PE=1 SV=4) HSP 1 Score: 88.1965 bits (217), Expect = 2.476e-22 Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 2
Query: 227 GQALKDAVAAEEKHARATSMQWKKISLFIALPGIGLCAYNAIIDELEHMKHAHPEFVGFEHLRIRKTSFPWGDGNHSLFHG-HNNPLPEGYE 499
G+ + EE AR WK ++ F+ALPG+ + N + H +H PEF+ + HLRIR FPWGDGNH+LFH H NPLP GYE
Sbjct: 21 GRPMSSGAHGEEGSAR----MWKTLTFFVALPGVAVSMLNVYLKS-HHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYE 107
The following BLAST results are available for this feature:
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