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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057235 ID=TCONS_00057235|Name=TCONS_00057235|organism=Clytia hemisphaerica|type=transcript|length=2051bpRun BLAST on NCBI protein sequence of TCONS_00057235-protein >TCONS_00057235-protein ID=TCONS_00057235-protein|Name=TCONS_00057235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp MDRKADRKQRTISQDFTFGHKMSSYVGFANLPNQVHRKTVKRGFEFTLMVRun BLAST on NCBI transcript from alignment at scaffold_286:148513..166544- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057235 ID=TCONS_00057235|Name=TCONS_00057235|organism=Clytia hemisphaerica|type=transcript|length=18032bp|location=Sequence derived from alignment at scaffold_286:148513..166544- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_286:148513..166544- >TCONS_00057235 ID=TCONS_00057235|Name=TCONS_00057235|organism=Clytia hemisphaerica|type=CDS|length=13464bp|location=Sequence derived from alignment at scaffold_286:148513..166544- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057235 vs. Swiss-Prot (Human)
Match: SEPT2 (Septin-2 OS=Homo sapiens GN=SEPT2 PE=1 SV=1) HSP 1 Score: 437.187 bits (1123), Expect = 2.370e-147 Identity = 216/337 (64.09%), Postives = 275/337 (81.60%), Query Frame = 2
Query: 197 YVGFANLPNQVHRKTVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYAGRNFSTAKERIKSTLNIDTSSVEIEERGVRLKLTVVDTPGYGDSLDCSNGFEPIVKYIEQQFENYLRDESGLNRRNITDNRVHCCFYFINPVGHGLKPIDVKFMQLLHERVNIVPVIGKADTLTKKELQKIKRKVLEEVHKNNIKIYDFPDCXXXXXXXXXXXXXXXXAAVPYAVIGSNTTIDIRGKKVRGRQYPWGIVEIENPNHCDFIKLRTMLITYMQDLKEVTQDFHYENYRAQRLKTPPGGSPKSDRKRSNQSLSQTDGASGEDEKSKMLREKEAELQRMQQML 1207
YVGFANLPNQVHRK+VK+GFEFTLMVVGESGLGKSTLINSLFLTDLY R A E+I+ T+ I+ S+VEIEERGV+L+LTVVDTPGYGD+++C + F+ I+ YI++QFE YL DESGLNRR+I DNRVHCCFYFI+P GHGLKP+DV FM+ +H +VNIVPVI KADTLT KE +++K+++L+E+ ++NIKIY PD + DEDE+FK T+ LKA++P++V+GSN I+ +GKKVRGR YPWG+VE+ENP H DF+KLRTMLIT+MQDL+EVTQD HYEN+R++RLK GG RK N+ ++ K ++L EKEAEL+RMQ+M+
Sbjct: 17 YVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLITHMQDLQEVTQDLHYENFRSERLKR--GG-----RKVENEDMN----------KDQILLEKEAELRRMQEMI 336 The following BLAST results are available for this feature:
BLAST of TCONS_00057235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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