TCONS_00057249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057249
Unique NameTCONS_00057249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057249 ID=TCONS_00057249|Name=TCONS_00057249|organism=Clytia hemisphaerica|type=transcript|length=1241bp
aggagtggcgcccttccctaccttcgggtagacagctatacggaaaggga
gccttcgggtcgccctcgactgcggtcgaaaCTTAGTTACAACTTCAATT
ACCACCATTTCCAAGGTTACTTGGTTACTACTTTTGAACTCAtctgggaa
tcaattaccatagcaatattttgaaaacgaggtaaacgttgctcgtgacg
taattcataaaaaggtctattttgggtattttaacgttttttcaCAATAT
CTCGGGCGAGAATTATGGTTTCAGTACTCTTTGGTTTAACTTCCTTCTGT
TTTTCACTTCAGGATTTTAGACTCTTGTACAGCGTTAATGAAAGCAATcc
gagaattaattttgaaatccaAAGATCTTCAGGACGAAATTGTGTCTGAA
GGAAGAGGTTCGGCGTCGGTGAAAGACTTTTACAAACGGCATCATAAATG
GACAGAGGGATTACTGTCAGCAGCTAAATCGGTTGGTTACGGAGCTACAA
TTTTAGTAGATGCAGCTGATAAGGTGATCGAACGAAAAGGGAAATTCGAA
GAGTTGGTTGTTTCGTCACATGAAATTGCTGCTTCGACCGCACAACTAGT
TGCAGCATCTCGAGTGAAAGCACACAAAACAAGTACACGACTTCCACCAC
TCATGACTGCATCCAAAGgagTTGGTGAGGCAACAGCGGGGGTTGTAGCA
GCCGTACGGAGTGGTGCATCTATGACCGAGGAATCTCaGACCGTTCCTGA
TTATTCGAAGATGTCTTTAACACAAGCCAAACGATACGAGATGGACAGCC
AGGTCAAAATTTTGGAGTTGGAAGACAAATTACAGAAAGAGCGGCAAAAT
TTGGGACGGTTACGTCAAGCACATTATCAAATCGCTGTCGAGATGTATGG
TGAAGATGCTGTCACCATGGATTAACGTCGCCCCGTCCTTCCGTACGTTC
ATCCGTCAAAATATTCGTTACTAATGCAATATTGCACGTCGACGTAGCAC
GCCAACATTTAACATACCTATGTTCCGCAGGGGAATTTGTGTGTACTTCA
TATGCATGGGGGTAGGGATTTTTTATTACGtaaaatatgacatattattt
tttatatcaAAGCAAATCTTAAAATTGACCAACTCTCTATCTAACAACGT
CTTGTTTAATACCGTATAGAAAATGTTGTCATTTTCTTCATTGGTTCCAT
GCATCATTGATACGATCATCGTTTGGATTATtagaaaaatg
Run BLAST on NCBI

transcript from alignment at scaffold_286:392384..403493-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057249 ID=TCONS_00057249|Name=TCONS_00057249|organism=Clytia hemisphaerica|type=transcript|length=11110bp|location=Sequence derived from alignment at scaffold_286:392384..403493- (Clytia hemisphaerica)
AGGAGTGGCGCCCTTCCCTACCTTCGGGTAGACAGCTATACGGAAAGGGA
GCCTTCGGGTCGCCCTCGACTGCGGTCGAAACTTAGTTACAACTTCAATT
ACCACCATTTCCAAGGTTACTTGGTTACTACTTTTGAACTCATCTGGGAA
TCAATTACCATAGCAATATTTTGAAAACGAGGTAAACGTTGCTCGTGACG
TAATTCATAAAAAGGTCTATTTTGGGTATTTTAACGTTTTTTCACAATAT
CTCGGGCGAGAATTATGGTTTCAGTACTCTTTGGTTTAACTTCCTTCTGT
TTTTCACTTCAGGATTTTAGACTCTTGTACAGCGTTAATGAAAGCAATCC
GAGAATTAATTTTGAAATCCAAAGATCTTCAGGACGAAATTGTGTCTGAA
GGAAGAGTAAGTATGTCCAAACATTCCATAAGGAATTTAAGGTTACTATA
CCGTTACGAAGCTGTTTGTTTATGGGTCTGTGAAAAGGGGGTGTAATCGT
GTACTGTTAGTTTCAAGACCTTTCCCCCAGTAACTGTCTGAACATACTAA
GGTTTAATATACAGTAAACTCTCGCTTATTTAAACTTTTATTATTCGAAC
TCGTTTCTAGTCTTCGAATCAACGAGATTCAACTGTAATTACGTAAAATC
AAAGCTTCGAAACTCTCCCCTTTCACATGAGAGCCTGTTTAGAATTTTTA
TAACTCTTCAATTTTGTGACTTTTAATTTTCACAGGGTTCGGCGTCGGTG
AAAGACTTTTACAAACGGCATCATAAATGGACAGAGGGATTACTGTCAGC
AGCTAAATCGGTTGGTTACGGAGCTACAATTTTAGTGTAAGTTTTCCCCC
CTTTCATCCTATCGAGGGGGACGTATGGGGGACGCGAACATCGAAATACC
CACGCATTTTTCTTAGATCACCGTCAACACTGATCAGCATAAATTGCAAA
ATTCCATATTTTGTTGCCACATGGCATTTTTGACATCATAACATTTCTTC
AAACACCGAAACATCAACGGAGAACACCAGGCTTAAAACCTATACGCTCT
CTACCCCGCCTCCTCTCTCCTTCCTCCGCTTTCCAATTAACTTGATAGTC
AAGGAGCGATACGAAACCATATAACATCTGAACATGGTCTTAATTAGCCT
GTACCAAACTCTCCTTCGCTTGCTGAAAAGATAACGCGAAGTTCGACGCA
CGCCAAGTTTTTTTCAAAATATAAAAAACCCCTTACATGCTAAGTCTTAA
TTTTTATTATCTTTTTATCAACAGAGATGCAGCTGATAAGGTGATCGAAC
GAAAAGGGAAATTCGAAGAGTTGGTTGTTTCGTCACATGAAATTGCTGCT
TCGACCGCACAACTAGTTTGTTCATTTATACACTATTTTCTTGTTGACCC
ATTCTATGGAATTATTTTTTGTCTTATAAACGCGTGTTTTCATTTTCAAT
CTTTTTCACTTCTGTCAAAAGAAAAGAAGCTTTAAAGACTGGTGCCTTTA
ATTCGAGATGTACTTCGGTTGATTGAGGATATTTTTTATGATATAAAAAG
GAAAAGCGCCTCTAGTATGCTGAAAAAGCAAAATAAGCAAAAGAATTTCC
CAACATTTGTGCGCCCGCGGCACCGAAAGTCGCCGTTCTTTTATTTGAAA
ATGCTATGTAAGCAAACGATGAGAGTATAAATTATAAATTTTGTCCTTTA
AGAAAAAGTGAAAAATTCTTAAATTTTTTTCTCAACCAGGTTGCAGCATC
TCGAGTGAAAGCACACAAAACAAGTACACGACTTCCACCACTCATGACTG
CATCCAAAGGAGGTAAAAAAAAGATTGAAAAAAAGTATTTTATTGAACTG
GTTTACCATTGGCCATTCTATATAACCGAAAATTTCCAGGGGATAATCCG
AAATTGTTTTCCAGGGGGTCTAAGGGAAGCTTTCGTATTTTTTCTAGGGA
GGTTGAGAATGCTTTTGTGTTATTTTCCAGTAGAGTGTTTGATTTTAGTT
GTTGCAAAATTGAACCTGCGGTTAAGCAAAAAGTGAGCATTTTAGTTAGA
AATTGACCGGTAAAATTGCCATTGATCCAGATTTTAACTCAAAAACTTTC
ATTTAAAGTAAAGTACCAAATTTGTCAGCAATTTTTAAACTCTGGTTTGT
AAAATACCAACCAAATAGCAGGCCTACCTGAAGTTTTACATATCATTTTC
AGTTTGTCAACATCTATAACGGGTCAAAGTTTAAAACTCAATCCTGAAAT
GTGAGTGAAAATTTCATCTCCTTCAATACACTCTTCTCGAGATACATAAA
CTTAGTGTTGCCCTCGTTCTCAAATACATTTGATTGCTATGAAATTCAGC
GTTGATCCTTACATATTCAAATCAGTCTAAATTCCCAAAAGGCAAGTATT
AGCTCTCAAACAAAAGAACATTAAATTCAAAATGTCTCTCGTAAACAACA
CAATTACCATTATGAATATGTGATTTTACAGCAATCCAATCTGTTTGAAA
ACGAGGCCAACAATAAGTTAATGCATCTCGAGAAGAGTGTATATGCAGGA
AGATTCTTAAAGGGCTGACGTTTACCAGGCTTTTCAGAAACAAATAGAGG
GACAAAAGGATAAGTAATTTTGATTATTTTTATTCATTATCATTCATAAT
AATATACGTAATATAAGAAAAAAACCGATATTAGAAAAACAAGAAAAAAC
TGAAAAAAAACTCCTCAAAAAATACCCTGAAAATGGTGGAAAATACTGCA
AATAAATAATTCCAAAAATGAAAAAAAAGATAAAAAAATTGGAAAAATTA
TAATAAAAATTGTGCGTTAACTTTCACTCGATGCGTGACTCAATGGCTTG
GCGAGCTCTGTCTTTGGCTCGTTTTCGGAATAATCGTCGTTTTGCTGTCT
TCGTGAGTTTTTTGGGAATGATTTGATCCCAAAGGTTATTCGAAAGTGAT
TTTTCGTACAGTTCTGCTGAGTTGCCTTCATCGTTGTGCTTCAAGTGGCA
ATCATTAGGTACTTTGTGTGTTTTCTCTTCTGTGAAAGAATTCTCATAAG
TACAGTCAACGTTGCTGCTGAACATTGGTGTGAAGATATCGACTTTGTTT
GGAGCTGTAGAGGCTCTATACCACGCGCCCTCATTGTAATTACCGTACAA
TCCAGATGTGTTGACTTCGTTTGTAGTTTGGACTAAGCGATTCCATACGC
TCTGGTTGTTATTACCATACATAAATTCGAAAGCGTCGACTTTGATTTGT
GGTACACCTTGCCGTACGTGCGTTTCTGGTTTGCGGACAGCATCCATGGC
CCGTTGGGTGCTGACCCGCAACTCAGCTTCTCGTGCGTAGTAAGCATGAC
GAACTTTGTCTTCGAGTGTCATACGATCTCTTTGTTGCTGGATTCTTGAG
GCGCTTCGTTGCCAACCAATGGGTTTGACAGATTCGTTTTGCCGACCGAT
TGCATCCATTTCGAATGATTCAGATATTAGATACTATATTTTACTTTGAT
TAACGTTTACAACTGTTTAATTGCTTGTCATTCACTGCTTTAACAAACAA
TGTACTAGCGAAAACTACTTCCGAAAATCTGTATCTCGATTGTTATTCAA
ATATGATATTTGACGTCAATTTCTACGTAAAAAAAATGGTAAAAAATAGA
TAACGTAATTTTTAGACAGATAATTTGTTGAAATATGCGGTGATTTTTGG
AAAAGATTAAGTAATGTTCAAAAAGCATAACATATTATCATTACACTAGC
TCAGCAATTTTTCACAGTAATTCGAACCTTAATACAAGTATCAAAACCTG
GCTTTAATAAATTTTTCACTAATTCATTTATCCTTATTTTATTTAGTTGG
TGAGGCAACAGCGGGGGTTGTAGCAGCCGTACGGAGTGGTGCATCTATGA
CCGAGGAATCTCGTAAGTAATGATAACATTATTAAAGTGACATGCTCCGA
AAAATTTAAAACCTTTTAGACAGCAAAGGGATTGTTTCCACGAAGGGCCG
CTAAAGTTTTTTCAAAGTTATTTTGCTGAAACTTTTTAATAGTTTTTATT
TGGTTAATAGGTAAAGACTGATGGTGAATGCGAGGGCAAAATCCCCAAAA
AACATTCCTCTGTTTGTTTGTTTGTTTTCAGAATAGTCTGAACTGGAGCC
CAATCCTCTTGTGGAGTTAGTGTTGACAGGTGTATTTAGTCCACGTTTTT
CATTAGAATTTAACAATAATCTTAAATTTGAGACACAACCTCTATATACA
GCCCCTTGTCACACCCGGTAGGATTTTTTTCAGCCAGTGGGGGTAAAAAT
AATAGACCAAAACTTGATTGGGATTTATGTAACTGCAGGAGAGCCGGACG
TGATACTTTACGGTTTCGGACGGTAATATATTTTGCTAAAATAGATAAAG
GTACAGTTCTTAAGTACAAATCAAACCTGAGAGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGTGTCGTAAATCTCAGTGAAAAATTGATCATTTTCATCATTATTC
ATGATGTTTTGGACTAGATTTATGAGAAGTTTGATGCATACTGGCTCTCT
AACATGTGGAAAGACTTTGGAGCAATTTTGGCCATGAATCGTCAGCTGAT
CGAGTGCTAAAAAATCTTGCATATGCTATGGTAAACAAAACCATAAAATT
CTGTAGGTGTAACTTGACAATGAAACTTTCAAACACACATCCATTGGAAT
TTAAAAGAGAATACTAAAATTACAACATTACAGTGAAAATTTGAAAACGA
TCTGAGTAGTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAATAA
AGGATACTAAAACACAATTCCAGTGTAAATTTGAACAAGAATGGAGAAAT
CTTCACAGTTTTATGGCTGAAAATGATCGTTTTTGGACTTCTTGCCGTAT
AATTTTTTCATCGCGGCTTGCGACCATTCCTTTTGATTTTTCAAACCCGA
CACAGATTTTTTACAAACATATGACTATGAGCATTCAGTAAAGGATACTA
AAACACAATTCCTGTGAAAATTTGAACAAGATTGGAGAAATTTTCAGTGT
TATGGCTGAAAATGATCGTTTTTGGACTTTGTTGTAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCAATTCCTGTGTAAATTTGAACAAGATCG
GAGAAATTTTCACAGTTTTATAACTGAAAATTATATTTTTTGGACTTTGT
CGTAATTTCATTGGCTGGGGCGACCATCCCTTTTAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGTAGTTTGTGGGCAACATTCTAACAAAACTAACT
CAACAAGCTCATCTTTCACATCTTTGAATCTCTTAAGCCGGAGCTTCCAG
CGCAGCTGGTTTATTACAAATTTCAATCTTTTCATAAAATCTCCGATTCC
CTCTGTTTGCTCAGACACTTTTTCTGAAGAGATTACAAACTCTTGATAAC
ACGATACGTCCGTGATTTCGTCATTTCTTGAACTTTCAAATAGATTCTTA
GTTTCAATACCAGCAACGAGCCAACAAGAAGTTTGTCCAAATTTATAGGA
GGCCTTCTGTAAGGAATTACCAACAACAATTTTTGGATCGGACAAAGACA
CAGATTCAAAAACATTCGCGATTCGAACACAAGGGCGACAAACTACGTTA
ACGCAAGCACGTGACAACTTTTCGACTTTAGGAACCACTGTTTCAACGGC
ATGTGGCGAGATATGCTCTGCGATTCTAATTTCTGGGAGTGGTACAGCGA
TGACAGTCTGACGACCTAAAATTCGTTCTGGAAGCGATTCCAAAATTTTA
AGGGCAGCATCAATAAAACTCTTACCGAATCGGACTTCAACATGATCATT
TGTAAACAGGCTTTCGCAATCGGAATAGAGTCTTGCGTAGTCGTCTAGAG
TTGTCAGCAGTCTTTCTCGTTCACAACCATAGGATAATACATTTTGCACA
AGGTCTTCCTTTCTGCTATAGATTTTTTGCATTTGCTGCGTAGAGTTCAT
GATGATATCAACAAATCGATTTCTTTTCACATAAAAGTCTTCTTCTGATA
GATTCGTCATCGTGATGAATAAGTCTTACGTTACCTTCGTAACAACAACT
CGATAACTTTATGCTGGGAGTTATTGAACCAACACACCGATTACGTGTAA
TGTTGCACTGCAAATTCGTGTTTCTCTTCTTTCAATGGATACTTGTTTAC
TGGTGCAAGATACCNGTGTCACATAATTACGTAATAATTGACAAATAAAT
AGACAATACACTGACGATCAAATTAACATAAAAATATACAAAACAACTGC
TATTCGGCAGTTACAATTTATATTCCCATGTTTTATACGGCTGGGGATTT
GAATTCCATTGTTTTTTGAACCAGAAAAAACAGTGGGGATGGAAAAAATA
GCACAATATTTTTCAGTGAGGATTTGCTTATCTGATTTTTTCAGCGGGGA
CAAAATTTAGAGTATAATTTTTCAATGGGGACGATATTTTGGCCTATTTT
GCCAGTGGGAAGGGTTCCTAGGGTCTGTGAGAAGGGGTTATCTATATGAA
TTTAAAANTTTTTCAATGGGGACGATATTTTGGCCTATTTTGCCAGTGGG
AAGGGGTCTGTGAGAAGGGGTTATCAATATGAATTTAAAAATGACATAAT
GCTGATGCCAACCCTTTTCTTTCTTTTTGTTTCTTTCAGAGACCGTTCCT
GATTATTCGAAGATGTCTTTAACACAAGCCAAACGATACGAGATGGACAG
CCAGGTAGGTTTATTTACAACTGACTCTCTCGCTTATTCGAACTCGGATT
GGGAATCTTATTTGCTCGAGTTTCAGAGAGATTCAAATTATAGAAAGTAT
TTCCTCGACGGAGACTGGGAAATTAGTCTGAATTATAGAAAGACTCGAAT
ATAATTTTGAATAAGCGAGAGTCTACTGTGTTTACAATTGACTTGAAAAG
ACGCACCATTGTACCCTTTTGCTGAGTAGGGCCAACGTCCCTTTCCCTTA
GGATTGGGATCACAGGCAAATCTTTTGTAACTACTCTTAGGTGCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGGGCGGGGGGGGGGGTTGGAAAATTTTCGAAAAATT
AACAAGTGGAGGGGCCCGTTTATTTGGCACCTAAGAGTAACGGTGGAATA
CCATTGAGCTGGCATATTTTTCAAAGCATCCAGAAAGATTTAGAAATGAG
ATTGAAGAGAGCTTTAAGAACGGTGAATTCCATGCAATTTCAGTGTAGTG
TAGAGATTTTGAAAATTAAAAGAGTTTAGCAAACCTTTCTAACGGGGATG
ATTGTATCGCACGGCTTTTCTTTTTACAATCCAGGTCAAAATTTTGGAGT
TGGAAGACAAATTACAGAAAGAGCGGCAAAATTTGGGACGGTTACGTCAA
GCACATTATCAAATCGCTGTCGAGATGTATGGTGAAGATGCTGTGAGTAA
AAGCGAATAGAACTTTCGTTTTGAAATTCAGTCGTGATTGTGAATCTGTT
CATGTAATCAAATTGATTCATTCATTCATTCATTCGTTTATTCGTGCATT
CTTTCATTCATTCATTCATTCATTTATTCGTGCATTTTTTCATTTATCCA
TTCATTCACTCGTTCATTCATTCAATCCTTTATTCATTCATTCATTCATT
TATTCAATCCTTCATTATTTCATCCATTCGCACTTTTATTGACTTGTCTG
TTCATTCGTTTTTGCTTTTCTTTCATTCATCATTTACTGAATCATTATTA
TGATTACGTCTATGTTATACCCATGATAGTAGGGGGAAATTTGTAAATTC
GCTCGATTTTTTTAGTCAAAGCACTTGTTATACATTTTTGGAAAGCTAAG
GGGTAGGAAAATCAAAATAATTTGGGTGCCAATTTTTTTTCGGACACTTT
GGTGTGATTTTCGGACAAATATGACGGTCTCGGACAAAAATTATAGGGTA
AAAAATTAATGAAAATTTTAGCTTGAGAAGATAGAGACCTGTAGTATATT
TTTAGAAAGCCCTCAAAAAATTAGAATTAGTGATATATTGTGAGTGCGAG
TATAGGTGATTTCAGTACCTAACTCAAGATATTGAGCATCCAAAAGCTGG
ACAAAACAGCTGTTTCTGGCTGAAAAACACTGTTTTTAAGGGTTAATATC
TCGAGTTAGGTACAGAAATCACCTATACTTGCAATCCAATATATCTCTAA
TCTTCATTTTTTGAGAGCTTTCCAAAAATATACAACAGGTCTCCGTTTTC
TCAAGCTAAAATTTTCATTAATTTTTCACCCTATAATTTTTGCCTGAGAC
CGTCATATTTGTCCGAGAATCACACCAAAGTGTCCGAAAAAAAACTGGCA
CCCAAGTTATTTTGATTCCCCCACCCTTTAGCTTTCAAAAAATGTATAAC
AAGTGCTTTGACTAAAAAAATCGAGCGACATAAAAAAAACGAACAAATTT
TCCCCTTAGTAAAAACATGCTCGAATTAACATTAAAACCATTTTCACCTT
TTTCAACTTCTAGGTCACCATGGATTAACGCTGCCCCGTCCTTCCGTACG
TTCATCTGTCAAAATATTCGNCCTTCTAGGTCACCATGGATTAACGTCGC
CCCGTCCTTCCGTACGTTCATCCGTCAAAATATTCGTTACTAATGCAATA
TTGCACGTCGACGTAGCACGCCAACATTTAACATACCTATGTTCCGCAGG
GGAATTTGTGTGTACTTCATATGCATGGGGGTAGGGATTTTTTATTACGT
AAAATATGACATATTATTTTTTATATCAAAGCAAATCTTAAAATTGACCA
ACTCTCTATCTAACAACGTCTTGTTTAATACCGTATAGAAAATGTTGTCA
TTTTCTTCATTGGTTCCATGCATCATTGATACGATCATCGTTTGGATTAT
TAGAAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036064XLOC_036064Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057249-exon-scaffold_286-1575043694:403088..403493TCONS_00057249-exon-scaffold_286-1575043694:403088..403493Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1575043694:402658..402758TCONS_00057249-exon-scaffold_286-1575043694:402658..402758Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1575043694:402129..402219TCONS_00057249-exon-scaffold_286-1575043694:402129..402219Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1575043694:401682..401754TCONS_00057249-exon-scaffold_286-1575043694:401682..401754Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1575043694:399582..399647TCONS_00057249-exon-scaffold_286-1575043694:399582..399647Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1575043694:394990..395054TCONS_00057249-exon-scaffold_286-1575043694:394990..395054Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1575043694:393852..393959TCONS_00057249-exon-scaffold_286-1575043694:393852..393959Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1575043694:392384..392714TCONS_00057249-exon-scaffold_286-1575043694:392384..392714Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1510915933:403088..403493TCONS_00057249-exon-scaffold_286-1510915933:403088..403493Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1510915933:402658..402758TCONS_00057249-exon-scaffold_286-1510915933:402658..402758Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1510915933:402129..402219TCONS_00057249-exon-scaffold_286-1510915933:402129..402219Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1510915933:401682..401754TCONS_00057249-exon-scaffold_286-1510915933:401682..401754Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1510915933:399582..399647TCONS_00057249-exon-scaffold_286-1510915933:399582..399647Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1510915933:394990..395054TCONS_00057249-exon-scaffold_286-1510915933:394990..395054Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1510915933:393852..393959TCONS_00057249-exon-scaffold_286-1510915933:393852..393959Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1510915933:392384..392714TCONS_00057249-exon-scaffold_286-1510915933:392384..392714Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1491911889:403088..403493TCONS_00057249-exon-scaffold_286-1491911889:403088..403493Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1491911889:402658..402758TCONS_00057249-exon-scaffold_286-1491911889:402658..402758Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1491911889:402129..402219TCONS_00057249-exon-scaffold_286-1491911889:402129..402219Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1491911889:401682..401754TCONS_00057249-exon-scaffold_286-1491911889:401682..401754Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1491911889:399582..399647TCONS_00057249-exon-scaffold_286-1491911889:399582..399647Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1491911889:394990..395054TCONS_00057249-exon-scaffold_286-1491911889:394990..395054Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1491911889:393852..393959TCONS_00057249-exon-scaffold_286-1491911889:393852..393959Clytia hemisphaericaexon
TCONS_00057249-exon-scaffold_286-1491911889:392384..392714TCONS_00057249-exon-scaffold_286-1491911889:392384..392714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:392384..403493 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.68686	6.08444	11.0258	10.0037	26.8081	22.7177	20.5208	19.4472	12.6262	14.9186	11.6675	10.9615	10.1812	10.7225	9.10458	9.78803	12.4723	7.92702	9.71762	11.8105	6.44183	8.24307	5.17169	7.72819	9.19166	11.0515	7.80523	4.52111	7.11321	7.30457
Blast
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BLAST of TCONS_00057249 vs. Swiss-Prot (Human)
Match: HIP1 (Huntingtin-interacting protein 1 OS=Homo sapiens GN=HIP1 PE=1 SV=5)

HSP 1 Score: 217.624 bits (553), Expect = 4.596e-62
Identity = 122/192 (63.54%), Postives = 156/192 (81.25%), Query Frame = 2 
Query:  311 RILDSCTALMKAIRELILKSKDLQDEIVSEGRGSASVKDFYKRHHKWTEGLLSAAKSVGYGATILVDAADKVIERKGKFEELVVSSHEIAASTAQLVAASRVKAHKTSTRLPPLMTASKXXXXXXXXXXXXXXXXXXMTEESQTVPDYSKMSLTQAKRYEMDSQVKILELEDKLQKERQNLGRLRQAHYQIA 886
            RIL  CT+LM+AI+ LI+ SKDLQ EIV  GRG+AS K+FY ++ +WTEGL+SA+K+VG+GAT++VDAAD V++ +GKFEEL+V SHEIAASTAQLVAAS+VKA K S  L  L  AS+GV +ATAGVVA+  SG S  EE+  + D+S M+LTQ KR EMDSQV++LELE++LQKERQ LG LR+ HY++A
Sbjct:  822 RILGCCTSLMQAIQVLIVASKDLQREIVESGRGTASPKEFYAKNSRWTEGLISASKAVGWGATVMVDAADLVVQGRGKFEELMVCSHEIAASTAQLVAASKVKADKDSPNLAQLQQASRGVNQATAGVVASTISGKSQIEETDNM-DFSSMTLTQIKRQEMDSQVRVLELENELQKERQKLGELRKKHYELA 1012
The following BLAST results are available for this feature:
BLAST of TCONS_00057249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HIP14.596e-6263.54Huntingtin-interacting protein 1 OS=Homo sapiens G... [more]
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