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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057263 ID=TCONS_00057263|Name=TCONS_00057263|organism=Clytia hemisphaerica|type=transcript|length=1456bp CGTGGAGAAGCAAAATCTTCAGTCAGCAAGTGGAAACAAACTTTAAAGAT TGTTTTAGATATACACATTCATGATGGGTAAAATTTCTATAATTGTATTC TTCTGCATTATTGCAGTGACAATCATTGAAGCGAAGAAATCTTTGACATG TGATGAATATATTGCTGGAAATCCTATGCAAGTGTGTGTTGATGGATACA TCTTTGAGCGAAATGATGAGGCAATGGTGACATGGCAGGATGCAGAAGAT GTTTGCAAAGGAAAAGGAGGTCATTTAGCTTCAGTTACAAGTGATAGTCA AGTGATAGCTATGGAGATGCTCCTTCCTACCGGTGAACAAGCATGGCTTG GTACAGTACAGGCGGGAACCGGTCCCTTGAATGCTGATAATACAGAAGTA ACTACGGACGTAGCAGCACAAATAACGACTGTAGACAACGCACTAGTTAT TGTAGATGGAGACATGGCTATTGCTGATTTAGTCGAACTTAATGCAGCTA CTCCTGCTACTCCTGTCAATCATTTCTTTTGCAAATACAATTATTTCCAT AacaggaaaatttattttggattTCCTGACACAGCTTTGAACCAACCTGA TACTGCTACAGCATGTGAAATGCTCGGTGAACCTAAGGATGGACGTATTA TTCAAATCGATAGTGGAAAACTTCAAAACTTCGTGAATGCAGAAGTTGAT CGATTAGTTGAGAAGGCAGATCCTGAGGAATATTTGTTTTGGATAAACAT GAAATACAGCGAAACGACCATGAAATACAAGTGGGGTGTTGAAGGGACTT ATTCACCTTTCCGTAAATGGTGTACCGCACAACCAGACGATGATGTGATC GATGCAGCTGATCGTTGTGTAGCTTTGACTGATGCTGGATGTTGGAAAGT TTACGATTGCAGTGTGACATCCGATACTATAACCATCGGTACTGATACTA CAATTAATCCTTTTCTTACTATGTGTGAGTTTGATATCCGTGAGTCAAAT CCAACCAAACATGAATTATTCACTTTGATTCAAGTTTTAAGATCAAACGT CAATGAAATCACTAAAGATTGTAAACGATGCAAAGGTGTTGAATAGAACT ATAAAAGTTTTCTTTCCTAGCCGGAATAAAACGTCAAGTCAAAGTTCATC TAACGTcaaacgttaaatgaacgttgacaTAACATATTTTTCCGGCTGGA TTGAATATCGAGATTGCCGGATATTTACAACAATGGACTGACCTTGATTT AAGAAAAACGATATTTTCATTATGTTTACCTGAAACTTTATTTATATTGC ATGTACGTATTTTGTAAGTGTTATTctaatttgttatttttaattCATGT TTGAATGTCTTTTTGCTTcactcttcattttcttcatatTCTTGACACGA CACTTGTTTTTGTGAGAACattttcatagaggtcaatagacctgcgaaat atattt Run BLAST on NCBI transcript from alignment at scaffold_286:839513..847364- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057263 ID=TCONS_00057263|Name=TCONS_00057263|organism=Clytia hemisphaerica|type=transcript|length=7852bp|location=Sequence derived from alignment at scaffold_286:839513..847364- (Clytia hemisphaerica) CGTGGAGAAGCAAAATCTTCAGTCAGCAAGTGGAAACAAACTTTAAAGAT
TGTTTTAGATATACACATTCATGATGGGTAAAATTTCTATAATTGTATTC
TTCTGCATTATTGCAGTGACAATCATTGAAGCGAAGAAATCTTTGACATG
TGATGAATATATTGCTGGAAATCCTATGCAAGTGTGTGGTATGTAAATCA
ATTAACTCAAAAGATACTTCTAAAAGTCAAATCCAAGTGTTTTTGGGTAG
GACAAAGAAAAATTAGGAAATAGGAAACAATTATTCTTGAAGAAAGCTTT
ACTTAAAACAACTTTTGTTCAGTAGCGTTCTGGCTGGGGTTTTTGGGGTG
CCCACTGCAAACTCGTTTCCATGTATGTTTTGAAGGAGTTCAGTCCTTTA
GTGCCTTCTTTATTCACAACCTTACTTTAGAATAAATAATGTAGAATCAT
TACTTTCAATAATTACCAATTTTCGACGCTTCTCTTTATCTTTTAGTTGA
TGGATACATCTTTGAGCGAAATGATGAGGCAATGGTGACATGGCAGGATG
CAGAAGATGTTTGCAAAGGAAAAGGAGGTCATTTAGCTTCAGTTACAAGT
GATAGTCAAGTGATAGCTATGGAGATGCTCCTTCCTACCGGGTAAGTTTT
GAGATGAACCATTAAAAAGTTACATTCAAATCTCCTTGTTATATTCTGAG
ATAACACTCTTTCATTGAATATTTTTTATGTGTTTTCTCATTGTGATCTA
GTTGGTTTACTGAAAGCGGTGAGAACATAACGTAATGACTTCAAAAACAT
TACATAATCCTATAGCGATCAATAAAGATAACAAATATTTTGCAGCTAAT
ATTTTTGAGTCGAAAAGGTGACTATCAAACATCTGCCTTTATTATTTTAT
CCAAAAAGGCCTTTTGTTGTAGTAATAGATATACCCACACTTCAAATTAC
CTTGAGAGAATTAATTTTTACGGGAAATTATTTTAATTTTTTCCCGGTTT
TACGAATTACGAATTTGGCTGTTTTTCTTTAACAAATTTGAAAAATTAGG
GATTAAATTAAAGAAATTTGTCACGAATAGGACAGAACTCTAAAAATATA
TCCCCGCAAAATGCCATTTCTCCAAACTTTCTTTCGCCCACGAAAATTAA
TTCCCACCAGAATTAGTTAAGTTAAGGTAGGTTTAAAAAAATTTCTGAAA
TGCACTTCTCTTTCCTTTAGTGAACAAGCATGGCTTGGTACAGTACAGGC
GGGAACCGGTCCCTTGAATGCTGATAATACAGAAGTAACTACGGACGTAG
CAGCACAAATAACGACTGTAGACAACGCACTAGTTATTGTAGATGGAGAC
ATGGCTATTGCTGATTTAGTCGAACTTAATGCAGCTACTCCTGCTACTCC
TGTCAATCATTTCTTTTGCAAATACAATTATTTCCATAACAGGAAAATTT
ATTTTGGATTTCCTGACACAGGTATTTTATAAGATTAAGAACAATTTTAT
TGTTTATTTAATCTCCGTTCCCGGACCAAAATAATATACTATTTTCGTCA
ATATACATCCAAAAAGGTAGACAATTCACAATATTCAAATAAAAGTTAGA
AAAGCATTAGAAAAAATTATTTAGTATAGACGTCAAAATTAAGGAAAATT
TTGAAAGTTATATTTCAAAATGGTGTTCCTTGTTTTTAATTTTTGACCAT
AACACTTTCCAAGAGTTTACCAAATGACAAACATTTTGGTATTTTTTGAA
CAATATTTAAATGCGCTTATATTTTACACTAATTTGTTTTTCAAGATTTG
TCGAAGAAAAATAAAAATTACATATAGAATAGTGTCATACAGTCAAGGAC
ACCTTCACTATTTATATTTCGTCAGAAATTAGATCGACATCACTGTGAAT
AAAAACTTTTCAAAAATATTTCCTTCAAAAAAATATTAAAACAAAGTTTT
AAAAGACATTGACCCGTAAAATGCGCGTTTTACTGTTTTTGTAGTCAAGC
AGACACATGAACGAAAAGAAGGAATGCACCTTTAATAGAAACATAAAAGT
AGTAAAATGTAAACATTGCACAAACCACGTGTCATTAAAGAGAACAATTA
AAATAACGTGCCCAAAAAAAACTAGTAAAATAATTGAAACAATCAAAATC
AGCCATATTTGTTTTGATTTTTTATTTCGACATGTGACATTTGTTTTCAT
ATTGTTACCCGCTACATACGGTTTGTTTACAAATTTTATCGGTACTTTTA
TGTCCTTTGACTTGTTGAAAGTAAAATGACTTTGATTGCTTATCAGAATA
AATACACGTTTTCTTTAAGAACAAACCATAAGATCATAATGGTTCGATGG
CTAAAATATCAAGAACAAGTTAAGAACATTATAGGCTTTGCTGACTCTAA
AATGAACAAAAATATGGCGAAAATAAGAACATGTTAAAAATATCTTTAGG
CTAAAAACTCGAAACAGTTAATTACATTCCGAGGCTTCAAAGATATTTAA
TGTTGTTGTAAAATAACGTGTATAATTATATATTTATAGTTGGATGACAA
TCATAAATCTACAATTTCTTTTGATAGCTTTGAACCAACCTGATACTGCT
ACAGCATGTGAAATGCTCGGTGAACCTAAGGATGGACGTATTATTCAAAT
CGATAGTGGAAAACTTCAAAACTTCGTGAATGCAGAAGTTGATCGATTGT
AAGTAGAATTAACTCTCATCGCTAAATCCAAGGCTGGAAGCATTCAGTTT
AAAGCCCGAATAGAATAGAATCTCTAACCTTTCTCAGGAAAGATAAAGTA
AAACCACTTATTTGCCATATAGAACACACCTAGAACGCTCCGGAATCATA
ACAACGGATTGTATCTAATGGGATCTAATGGTTTCTTTTTTTTGAGGACT
ACATTTCATGAAATCTAGACTTAGACTTTTCTTTCAATCCAGCGTTTGTG
TGGCTGTTCTGGAATGGGAAATTAAGGGGGCTTCATTTCCCATCCAAGAG
TCGAGAAAGCACACCAAGATGATTAAATCCCTTTAGTTTTCAGGTGTTAC
TTTTGGAATAGTGTATAAATACACCCCTTTCTCACAGACCCACTCGAAAC
CCTTCCCACTGGAAAAATTGGCAAAAATATCGTCCCCAGTGGAAAATTAT
ACACTAGTTTTTGCCCCCAACAGAAAATATACAGATAAGCCATTTCTCAT
TGCAAATTATTGTGCTATTTTTTCCGTCTCCACTGATTTTTCTGGCTAAA
AAAGAATAGAANTTTTGTTGTAGTAATAGATATACCCACACTTCAAATTA
CCTTGAGAGAATTAATTTTTACGGGAAATTATTTTAATTTTTTCCCGGTT
TTACGAATTACGAATTTGGCTGTTTTTCTTTAACAAATTTGAAAAATTAG
GGATTAAATTAAAGAAATTTGTCACGAATAGGACAGAACTCTAAAAATAT
ATCCCCGCAAAATGCCATTTCTCCAAACTTTCTTTCGCCCACGAAAATTA
ATTCCCACCAGAATTAGTTAAGTTAAGGTAGGTTTAAAAAAATTTCTGAA
ATGCACTTCTCTTTCCTTTAGTGAACAAGCATGGCTTGGTACAGTACAGG
CGGGAACCGGTCCCTTGAATGCTGATAATACAGAAGTAACTACGGACGTA
GCAGCACAAATAACGACTGTAGACAACGCACTAGTTATTGTAGATGGAGA
CATGGCTATTGCTGATTTAGTCGAACTTAATGCAGCTACTCCTGCTACTC
CTGTCAATCATTTCTTTTGCAAATACAATTATTTCCATAACAGGAAAATT
TATTTTGGATTTCCTGACACAGGTATGTTATAAGATTAAGAACAATTTTA
TTGTTTATTTAATCTCCGTTCCCAGACCAAATAATATACTATTTTCGTCA
ATTTACATCCAAAAAGGTAGACAATTCACAATATTCAAATAAAAGTTAGA
AAAGCATTAGAAAAAATTATTTAGTATAGTCGCCAAAATGAAGAAAAATT
TTAAAAGTTCTATTTCAAAATGGTGTTCCTCGTTTTTATTTTGACCATAA
CACTTTCCAAGAGTTTACCAAATGACAAACATTTTGGTATTTTTTGAACA
ATATTTAAATGAGCTTATATTTTCCACTAATTTGTTTCTCAAGATTTGTC
GAAGAAAAATGAAAATGACATATAGAATAGTGCCATAGTTATTATAATAA
AAAGATTGAAACTTCAAGCTTAGATCAACATCACTGTGAAAAAACTTTTC
AAAAATATTTCCTTCAAAAAATATTAAAACTAGGCACTTCAGTCACGTGA
CTAAAACAAAGTTTTAAAAGACATTGACCCCTAAAATGCGCGTTTTACTG
TTTTTGTAGTCAAGCAGACACATGAACGAAAAGAAGGAATGCACCTTTAA
TAGGAACATAAAAGTAGTAAAATGTAAACATTGCACAAACCACGTGTCAT
TAAAGAGAACAATTAAAATAACGTGCCCAAAAAAAACTAGTAAAATAATT
GAAACAATCAAAATCAGCCATATTTGTTTTGATTTTTTATTTCGACATGT
GACATTTGTTTTGATATTGTTACCCACATACGACGGTTTGTTTACAAATT
TCATCGGTACTTTTATGTCCTTTGACTTGTTGAAAGTGAATTGACTTTGA
TTGCTTATCAGAATTAATACACGTTTTCTTTAAGAACAAACCATAAGATC
ATAATGCTCCGATGGCTAAAATATCAAGAACAAGTTAAGAACATTATAGA
CTTGCTGACTCTAAAATGAACCAAAAATATGGCGAAAAAAACAACATGTT
AAAAATATATTTAGGCTAAAAACTCGAAACAGTTAATAACATCCCGGTGC
TTCAAAGATATTTGATGTTGTTGTAAAATAACGTGTAAAATTATATATTT
ATATTTGGATGACAATCATAAATCTACAATTTCTTTTGATAGCTTTGAAC
CAACCTGATACTGCTACAGCATGTGAAATGCTCGGTGAACCTAAGGATGG
ACGTATTATTCAAATCGATAGTGGAAAACTTCAAAACTTCGTGAATGCAG
AAGTTGATCGATTGTAAGTAGAATTAACTCTCATCGCTAAATCCAAGGCT
GGAAGCATTCAGTTTAAAGCCCGAAGTGCTAGAATAGAACCTCTAACCTT
TCTCAGGAAAGATAAAGTAAAATTACTTATTTGCCATCCAGAACACACCA
AGAACGCTCCGGAATCATAACAACGGATTGTATCTAATGGGATCTAATGG
TTTATTTTTTTTTGAGGACTGCATTTCATGAAATCTAGACTTAGACTTTA
CTTTCAATCCAGCGTTTGTGTGGGCGTTCTGGAATGGGAAATTAAGGGAC
TTCATTTCCCATCCTGGATTCGAGAAAGCATCACCAAGATGATTAAATCT
CTTTAGTTTTCAGATGTTACTTTTGGAATAGAGTATAAATACACCCCTTT
CTCACAGACCCACTGGGACCCCTTCCCACTGGAAAAATTGGCCAAAATAT
CTTCCCCGGTGGAAAATTATACTCCAAATTTTTGTCCCCAATGAAATAAT
CAGATAAGCCAATTCTCAATGCAGATTATTACGCTATTTTTCCGTCCCCA
CTGATTTTTCTGGCTGAAAAACAATAGAATTCAAATCCCCAGCCATGAAA
AAACATGAAAATGTCAATTTCCATCGAGTTTTGGTTCACTATTTTTATTC
CTAATGGCTGAAAAAAGCCAACCAGGTCTGTGGGAAGGGGGTGTTTCAAT
TCTCCTTAAAAACTCCTCTCGGAATCAATTACCATAGCAATAGTTTGGAA
ACGAGGTAATCGTTGCTCAGGACGTAATTTATGAAAAGGTCTATTCACTC
GATTACAATAATTTAAACTACATACTCATTTATTAAAACTTAACTTGTTC
ATTGAATACCATAGAGTTGAGAAGGCAGATCCTGAGGAATATTTGTTTTG
GATAAACATGAAATACAGCGAAACGACCATGAAATACAAGTGGGGTGTTG
AAGGGACTTATTCACCTTTCCGTAAATGGTGTACCGGTAAGTCTAATCAA
ATACACTTTTTTTTACCAGATTCATATAAAAAAGTCACGAAAAAACATCG
AGTGGTTGGCTAAATATTACATATATAAGCAAATTTGTTCAAGTGTCCAA
AGTATGAGGCAATCTTTGCATGTTTGAGCCAATCAGAGCTTAACTCAAGG
TTCTTTTTATATGAATCTACTGATGGGAAATACGTGTAATCTAATGATTT
GTAACTTCAGTTAAAAAAACCCCTTTCTCACAGACCTGGTAGGATTTTTT
TTCAGCCAGTGGGGTAAAAATAACTGATTAAGACTCAATGTTGATTGATA
CTCTCATGTTTTTTATGGCTACTCTCGGGTACCTAGCCCCCCCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCACTCATCAATT
TTGGGGAAAACGTTTTTGAAAGTTCCCTTTTTAGTCCTAATTCCGCTTTA
TTTGCCTCCTTTTCAAAAGCTTTCCACCCAGGACACTTTTATTCCAACCC
CCCCTCCCACATGCTAATTAAGTTTTGAGACTTTTTCTAATTCCGCCCTC
CACTTATTCCAATCCCCCAAATATTAGATAACCGAGAGTAAGGATTGGGA
TTCCATTATTTCCTAGGCAGAAAATTCAACGAGGATGGAAAAAATAGCAC
TGTATTTTGAAGTGAAGCTTTGCTTATTTCATTATCTTAAGCTGGGACAA
AAATTAGAGTATAATTTCTAACTAGAGAGGATATTTTGGACAATTTTTCC
ATTTGGAAAGGTTCCAGTTGCTCTGAGAGAAGGGTGTTGTTAAGATTCAT
ATGCTTTAACTGTGCGGTCTCTTTATTAAAACGGTGCAAATTAAAAGTGA
ATTAACTTCAATTTATTTCTATAAAGATAAGGATCTGTTGAAATCAGATT
GGGGTGATAAGCTAACCAAAAACACCATCTTTGATTTATTACCATCTTAA
GTCAGATGGTCCGTGTTATTTCGACCGCGTGGTCAAAAGATGATGTTGAT
GCAGACATTGGGAAAATAATATTACTAAAGTTTAATACTTAATAAACTAA
AATATTTGTTTCATCTTTTGTAGCACAACCAGACGATGATGTGATCGATG
CAGCTGATCGTTGTGTAGCTTTGACTGATGCTGGATGTTGGAAAGTTTAC
GATTGCAGTGTGACATCCGATACTATAACCATCGGTACTGATACTACAAT
TAATCCTTTTCTTACTATGTGTGAGTTTGATATCCGTGAGTCAAATCCAA
CCAAACATGAATTATTCACTTTGATTCAAGTTTTAAGATCAAACGTCAAT
GAAATCACTAAAGATTGTAAACGATGCAAAGGTGTTGAATAGAACTATAA
AAGTTTTCTTTCCTAGCCGGAATAAAACGTCAAGTCAAAGTTCATCTAAC
GTCAAACGTTAAATGAACGTTGACATAACATATTTTTCCGGCTGGATTGA
ATATCGAGATTGCCGGATATTTACAACAATGGACTGACCTTGATTTAAGA
AAAACGATATTTTCATTATGTTTACCTGAAACTTTATTTATATTGCATGT
ACGTATTTTGTAAGTGTTATTCTAATTTGTTATTTTTAATTCATGTTTGA
ATGTCTTTTTGCTTCACTCTTCATTTTCTTCATATTCTTGACACGACACT
TGTTTTTGTGAGAACATTTTCATAGAGGTCAATAGACCTGCGAAATATAT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057263-exon-scaffold_286-1575043694:847177..847364 | TCONS_00057263-exon-scaffold_286-1575043694:847177..847364 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1575043694:846724..846868 | TCONS_00057263-exon-scaffold_286-1575043694:846724..846868 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1575043694:843543..843793 | TCONS_00057263-exon-scaffold_286-1575043694:843543..843793 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1575043694:842302..842422 | TCONS_00057263-exon-scaffold_286-1575043694:842302..842422 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1575043694:841329..841450 | TCONS_00057263-exon-scaffold_286-1575043694:841329..841450 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1575043694:839513..840141 | TCONS_00057263-exon-scaffold_286-1575043694:839513..840141 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1510915933:847177..847364 | TCONS_00057263-exon-scaffold_286-1510915933:847177..847364 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1510915933:846724..846868 | TCONS_00057263-exon-scaffold_286-1510915933:846724..846868 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1510915933:843543..843793 | TCONS_00057263-exon-scaffold_286-1510915933:843543..843793 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1510915933:842302..842422 | TCONS_00057263-exon-scaffold_286-1510915933:842302..842422 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1510915933:841329..841450 | TCONS_00057263-exon-scaffold_286-1510915933:841329..841450 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1510915933:839513..840141 | TCONS_00057263-exon-scaffold_286-1510915933:839513..840141 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1491911889:847177..847364 | TCONS_00057263-exon-scaffold_286-1491911889:847177..847364 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1491911889:846724..846868 | TCONS_00057263-exon-scaffold_286-1491911889:846724..846868 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1491911889:843543..843793 | TCONS_00057263-exon-scaffold_286-1491911889:843543..843793 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1491911889:842302..842422 | TCONS_00057263-exon-scaffold_286-1491911889:842302..842422 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1491911889:841329..841450 | TCONS_00057263-exon-scaffold_286-1491911889:841329..841450 | Clytia hemisphaerica | exon |
TCONS_00057263-exon-scaffold_286-1491911889:839513..840141 | TCONS_00057263-exon-scaffold_286-1491911889:839513..840141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_286 | supercontig | scaffold_286:839513..847364 - |
Blast
The following BLAST results are available for this feature:
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