TCONS_00057288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057288
Unique NameTCONS_00057288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057288 ID=TCONS_00057288|Name=TCONS_00057288|organism=Clytia hemisphaerica|type=transcript|length=442bp
AATCCACCCAACTTCACTGGTAGAGACAGCAATTGACGTTCATGGTCGTT
ACAGGTTCTGCCGTTGCACAATGCAGGGATGAAGTGGTGTCGAATTACAT
CTTCTACCGGTTGAAGAAGTGTTTTCACGTCGGGAATGGTTCGAATGAGG
TAGTTGAATTTGTGCACGAAACCAGCGGTGAATGCACAATACGCAGATTG
AGGATACGCTTTCGCAATCTCGGAAAGTAGTTTGAGCTGTGAAACCCAGT
CGTTCACGAAATCTGTGACGTATTCGATCTTAAATTCGTTTGTTCCAACT
GCTGCACCCAAATGGCGTTTTCCTTCTTTCGTGATATTGATACCCGTACC
TTCAAATATGACTTTTGCGAGCTCATACTTGTCTGGCTTTACTACTAGCC
ATGATTTCGAGCTTTTTGGAAAGTAGCCAAGATGTGGACCAA
Run BLAST on NCBI

protein sequence of TCONS_00057288-protein

>TCONS_00057288-protein ID=TCONS_00057288-protein|Name=TCONS_00057288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
GPHLGYFPKSSKSWLVVKPDKYELAKVIFEGTGINITKEGKRHLGAAVGT
NEFKIEYVTDFVNDWVSQLKLLSEIAKAYPQSAYCAFTAGFVHKFNYLIR
TIPDVKTLLQPVEDVIRHHFIPALCNGRTCNDHERQLLSLPVKLGG
Run BLAST on NCBI

transcript from alignment at scaffold_286:327976..328417

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057288 ID=TCONS_00057288|Name=TCONS_00057288|organism=Clytia hemisphaerica|type=transcript|length=442bp|location=Sequence derived from alignment at scaffold_286:327976..328417 (Clytia hemisphaerica)
TTGGTCCACATCTTGGCTACTTTCCAAAAAGCTCGAAATCATGGCTAGTA
GTAAAGCCAGACAAGTATGAGCTCGCAAAAGTCATATTTGAAGGTACGGG
TATCAATATCACGAAAGAAGGAAAACGCCATTTGGGTGCAGCAGTTGGAA
CAAACGAATTTAAGATCGAATACGTCACAGATTTCGTGAACGACTGGGTT
TCACAGCTCAAACTACTTTCCGAGATTGCGAAAGCGTATCCTCAATCTGC
GTATTGTGCATTCACCGCTGGTTTCGTGCACAAATTCAACTACCTCATTC
GAACCATTCCCGACGTGAAAACACTTCTTCAACCGGTAGAAGATGTAATT
CGACACCACTTCATCCCTGCATTGTGCAACGGCAGAACCTGTAACGACCA
TGAACGTCAATTGCTGTCTCTACCAGTGAAGTTGGGTGGATT

Coding sequence (CDS) from alignment at scaffold_286:327976..328417

>TCONS_00057288 ID=TCONS_00057288|Name=TCONS_00057288|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_286:327976..328417 (Clytia hemisphaerica)
GGTCCACATCTTGGCTACTTTCCAAAAAGCTCGAAATCATGGCTAGTAGT
AAAGCCAGACAAGTATGAGCTCGCAAAAGTCATATTTGAAGGTACGGGTA
TCAATATCACGAAAGAAGGAAAACGCCATTTGGGTGCAGCAGTTGGAACA
AACGAATTTAAGATCGAATACGTCACAGATTTCGTGAACGACTGGGTTTC
ACAGCTCAAACTACTTTCCGAGATTGCGAAAGCGTATCCTCAATCTGCGT
ATTGTGCATTCACCGCTGGTTTCGTGCACAAATTCAACTACCTCATTCGA
ACCATTCCCGACGTGAAAACACTTCTTCAACCGGTAGAAGATGTAATTCG
ACACCACTTCATCCCTGCATTGTGCAACGGCAGAACCTGTAACGACCATG
AACGTCAATTGCTGTCTCTACCAGTGAAGTTGGGTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036093XLOC_036093Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057288-proteinTCONS_00057288-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057288-exon-scaffold_286-1491911889:327976..328417TCONS_00057288-exon-scaffold_286-1491911889:327976..328417Clytia hemisphaericaexon
TCONS_00057288-exon-scaffold_286-1510915933:327976..328417TCONS_00057288-exon-scaffold_286-1510915933:327976..328417Clytia hemisphaericaexon
TCONS_00057288-exon-scaffold_286-1575043694:327976..328417TCONS_00057288-exon-scaffold_286-1575043694:327976..328417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:327976..328417 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.02669	2.43391	2.34913	4.21518	1.53973	1.27147	1.69691	2.02815	1.72153	0.946498	0.432305	0.092786	0.114305	0	0	0.169376	0	0	0.174584	0	1.30784	3.06395	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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