TCONS_00057326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057326
Unique NameTCONS_00057326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057326 ID=TCONS_00057326|Name=TCONS_00057326|organism=Clytia hemisphaerica|type=transcript|length=2725bp
GGAAGGCTACTTTAGAGTAAGATGGCTAAAGCAATGCTaaaagctggaaa
aactggCCTAACAAGGGCTAAGCAGtTCACTGAAGAAAGGATTGGCAGTG
CTGAAAAGACAGTCTACGATGCTCAATTTGAGAACCTCAATCTTCGTGCT
GATCGAACCAAAAACATCACTGAGAAACTTCTACGTCAGGGAGAAGCTAT
GGTTCAACCCAATCCAAGTGTAAGGATAGAAGAATATATGTATGAGAAAT
TGGATAAGAAAAATCCTCCACGTCCAACCAATGCTTTCATACTGGGCCAA
ACAATGCAAGATGCAAGTCAAGATATCGGCCCCGGTACAGCTTATGGTTC
AGCTCTGTCACAATGTGGAGGTACAATGAAGAAGATGGGAAACGCTGAAA
AAGATTTTATGCAGAAGTCCATGTCTCACTTCTTACACCCTCTCAAAAGC
TTCTTGgataatgaaatgaaaaccaTTATGaaagaaaaacgagcACTGGA
AGTGAAGCGACTTGATTTAGACGCGTGTAAAAACAAAGTCAAGAAATCTC
AAACCCCTGAAAAAATGCGACAGGCTGAATCCGAATTACGAGCTGCTCAA
TCAGATTTCGACCGACAACAAGAAATTACGAGGTTGCTTTTAGAAGGCGT
CTCCACTGCACATGGCAACCATTTAACAGCTTTACATAGTTACGTTGAAG
CCTTAGGAACCTACCATCAACAATGCCAATCGTATANgtgtcaaaatttg
aatcaTTGTAGGAAATCCACAAAGGCGGTTTTTCGACGATAGACCCTCCG
AAAAGCCACCCAGACACACCCTTTAAGGCTTTCACTGATAATGACACTTT
GGTAAGNCTCTTATTTCGTTTTATTTTTTGGATGAATAAAATTCATTAAA
TGTCCTTTTTTAAGGTTTTAGGAAAAAAACATGCTAGGGTTAAACAAAGA
AAACTACTTGCTAGTTCCCTTGTTTTTTGAGGTATCAATATCAACCGCTT
GACAATCTGCTATACTATTatatacagtggaacctctaattagcggacac
catcggggaaaggggttggtgtccgctaattagaagtgtccgccttttag
aaacttttgatctcggagctccaattttgaaattaggctatcccagggtg
tcgaaataccaaattggggtctaaagtacttatctgcagacactaggcca
tagaagaacaagagaaaggttaATAAAACGCaacaattcaatttttaaca
aataaaagaaaatctagaaatataacaccaaaattgaaaatacaattcgt
tgaatgggtcaagggaaaactggaaatttgtNCCAATTCTTAATTCGTCT
TTTTTTCTGCTTTGCTCAAACTTTTACCCTTTAAAGCGACAAGAAGCTTA
TGCTATATGCTAAGCTAATGTGAATACatgttttcgaaaaatttatgatt
tttgaacTTGGGTAAATTAttgtcaaaagttttcaaatacCATTTTGGGT
AATTTACAGACAAGGATAAACGCCCAAGATTTTNcctaaattaatttttt
cgattttggacgtctgtgacccgtttgatattcaatgtccgctaattgga
gagctaaaataggggttttggccatttcgtgcgaaaaaatttNTTTACAG
ACAAGGATAAACGCCCAAGATTTTAGAACTAAAACATAAAACTAAAACGG
TACTAACCTCAAGTAATATTAACTTGTAATGCTACATCTCTATAGCTAAT
ATGTAAACTCTACATTTAACAACGGTCATGACTAAAAAAGGTGAAAGTGG
TTTCTACGAAGCCAATCTCTTCTAACTAACTTCAATAATGTTGAAATCGA
ATACAACACGATANtaattgtccgctaatcagaggtgtccgccttttaga
gtgtccgttaattagaggttttactgtactACTATCCTTTAAGTGGTTCT
GCTTAAGTTATTGAGCACAAGCTTCTTGCATCATTGTAAAGTGTATAGGA
AAATATTTGCAAGTATGCTAGTCTGCGTATAGTCACNATTTTTTTCATCT
CACCAGGTCGTAAATGTGTACAGTATTGAGGGAATGCATTCGGATTACAT
GATGGCACAACGTGGACAGCAAAAAGGAAAAGTACCAATCTCCTATCTCG
AACTtttgtaaattgtaaaaatccattaaaaacataatttaattTATTAC
AATTATACATACCTAAATAGTTTGATTCGATTTTTTGTTCTGTTATGAGT
TGAATGGTAATATTTTGAAGTAATTAACATTTTTGCAGTAAGGGGTTTGG
TCTGATCTTGTTGATGCGATGTAGTAAGACCATAGTGAGATTTGGTTTCG
TAATTTTATTGGACCGGTCCTTTGAAGATTCCTCTTGTTTGAGATTCTGC
AAAATGTAACACTGTAAAGTCTCATTCTTACAGAACTTGATATTCACATT
CAAGTATGGCAGTGTAGGTTTCCGGGTTTTTAATTAGGAATATTCTTCGA
AATTTTGTTTAGTTaagaaaagttatttttcaGTACTTGAAATAATTTGG
TGATTTTAATTCATTTTCTTACAAATTACTTTTAATGTTAAATTCTTATG
TTATAATGAATTGAATATAGCATTTTTATACCGAAAATGTTGATGGTTTA
TTCTTCCCGTTTATCTTTTACGACCCTCTTGATTAttttcacacccctgt
ctcacagccctggtggaaTTCTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_288:246703..256490+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057326 ID=TCONS_00057326|Name=TCONS_00057326|organism=Clytia hemisphaerica|type=transcript|length=9788bp|location=Sequence derived from alignment at scaffold_288:246703..256490+ (Clytia hemisphaerica)
GGAAGGCTACTTTAGAGTAAGATGGCTAAAGCAATGCTaaaagctggaaa
aactggCCTAACAAGGGCTAAGCAGGTAGGTATTTCATCCTGAATGCACA
TTTTTGTATAAGCAACCCAGTTTCTAAAGAGTCCAGCCctgagaatagac
cttttttcaaagaggcaaccctgttgaataattatgtagtccagccatac
aaacaatgatacagtagtgcataattactgtttcatgcatattgtaataa
ttatgcatgggtgtatcattgtttttctgctggactacataattattcaa
cagggtggcctctttgaaaaaaggtctatggccAAAAGATTGAGAAACTT
GGACTTAATAACCTATCCCTTaaacaggctagctctaaagctctaaaaca
acatctaataacatgaaaaccagaatatgattcttcaatgggagtCAAAA
CTAGTCCAGATGTTACTAATCGATAAAATcgattatcgattaaaatcgat
aagctaatcgataattaattgattgattAAATATCAATTAAAAACAGTAA
AGTTTGTAAgtacatcaatttgtcagatctaacaaaattaataaccgcac
tgtcatcatttacaataaaacaaacaattttctgtcaagatccttctaaa
cattccaacaacttccatcaaaatgatatatcacttcaatctgtcaatca
ttttctcaagcgaagagtacacaaagcgattctagctttacgatagtgcc
gcggatcatcaatgaatggtattcaattatcattatccctttattttcag
tcctagaacttttgcaaaaaaaaggaaaaatagttCTATTTTTTACTGAT
CTATTCACATATTGAATtagaaagatcttctatgtggcgtttttttgcaa
acttcaaaaaactgattttttcccGCTTTTGAGAGACTTTGGCTTAGTGC
TTGCGTGcggcatagggtacaaagtccaatcATGCGtttcttgtaatttt
tgtatgaagagtctGGAAGAGTTAAGTCTATACTGTTAAACTGAACACTA
ACCGGtaaagcaaacaaacaaacttaaaaaGAGGCATTTTCCTCATCATT
TGCTATCAAAATGTGTCCCGATGGTATTTGAATACTGAATTTGAGgttta
gacaaaattttggaaattgctAGGCCTTTTTGGATCAATATCCATAAGCA
ACTGCGGAAGGAAAAAAAGAGGTGTTTTTCCtgttcttttttaaaatttc
atcacCCCACATCTTGATGAAAAGAGGGTAattttatataataaaaaaGG
ATTACAATTACGATAATGCTTCTTTTCTTTGCGTAACAATTGTCTTATTT
TCAAACTGGTACCTTTAAGTGAGTGCGCTGGACAAGGTCACAACActcta
aaaaacagtttttcaaaCGCCTGTCACTATCGAGCTGTCATCTTTACGAC
AGCCATTATGCTTTCAAATGCAGAAAGATAAGGCTTTCTTCTAGTGCTAC
CTGTTTTTCCAGTCAGCAAATACATTGAACGTTATGATGAAAATAAGGAT
AtataatattaaaatattttcgaGAATTTTGGATATTTCATTTGAAGCAG
GTTACAGAGTGAAAAGTCTCATTATATATACTTTCTAGTGGCAGGAGATG
TTTTTAACTATTATTTACAGCTAATTGTTCGATCTTGCTCTTCTTGTCAA
TTCAAGCATATAGCTATGGCAAGAATCTTTTGATCCACACCACAATCTTT
GTGTGTGAAATCCACAATTCCTGAAGGAAAAATGGATCAGCAGAGAGATT
TCATGTCTAAGATTTAGTTTGAGCCAACTCTCCCATTACCATAAATTTGG
GGTCCATCAGGAATTCTCAGGAAATTTCAGGTGATTATCCATTGCATTTT
TGAATTCATCAACTGGAACATTTTGCATTGAACAGCTTTGCACCTTGTAT
TGCTTAGGTGCTGTCAcataatttcaaattatttggaCAAATGTACTTGG
TAACACACATTTGTCCTAGACGTGGGCTGGGTGGTCTTTTACTTTGAAGC
TATCATTGATGTTTACTATTATGCTTTCTAGAATTTTCCAAATGATTCGT
TATCGCTCTCTTCTTCTCTGAAGTGAGTATATCTTGAGCTGCATGAGACT
TTCCCAATAATTTTGAGGTGCTCCACttatttgctttaaaaaaggtATCT
TTTCAAGTCTTTGAATAAGACCAACAGAACCAGGCCTCCATAGAACTGAG
CCCTACTCCAGAATTGGGATAACAAGTGATTTATATAGAGTAGGCAAGTG
AAGGTTTGTAATATCCAAGAAATGAGATTTTTTGCTTGATATTAATTTGA
AGAGGCAATTACTGGACATGGGGACTCCCAAATCTTTAACAAAAcctttt
cttcaattttatctcCTGTTGGTGAAGTGTAATAGGTTTCctttttgatt
tcattattcaaaTCATAACGCAACAATTCAAATTCGGTATCATTTCATAT
TGTTAGTGATTGTTCATTGGTATAAGATCTGAAGCTCTTGCTGTAGTATT
TTGACATCTTCAGCATTCTTTATTGATTTGGTGGCGCAAGTGTCATCTGC
AAAGGAATTTACAATACAGTTTTATGACATTTGCATAGCTATGTCTTCGA
TGAGGATCAGGATCCTTTTCTGGAACCCCTAATTACCTCCTGTTGGTTTG
ATCTCACAACATTCACCATTACTGTTTGTATAAGCGAAAGATTATCATTG
ATCAGGCTAACTGGGAACTCTCCCTGATGTGTATGAAAAACTACAATTAT
TATTCATCATTTTAGTTCCATATATAAGCTGAATAAGGTGGAATGGCTGT
TCTTTGAAAGAGTCTGAACCTTTGATTTGACAATGAAATAACTTGGTTAG
TATTTAACAAATTTTattaaatgacccctcattttcttttctaaggtaag
ggtttttaaaaattgtggGAGAATGTTGCCCTCTCACAGGCTAGTGGTGA
CGTCCATCCCATTCTGCCACCAGGCGAAGAAACCTTTTGTACAACGCAAT
ACCGTAACTTAGTGTAATGCTGATATGCCTTGTCTAATCCAGTCATTGTA
ACTATCTGGTCTGCAAATTAGTCAGCAATATTTTAAACAGGTTACTCCTG
GTTACTCAAAAGGTTTTTTAATTAAAAGACCATAATCTCTACGatggaat
tagacaaggtattTCGGCATTACACAAAGTTACGTTACCATTTTGAATCC
AAAGTTAGTGAGGAAAAGCATTACATAATGACTCAAAGACATCCAGTGAT
GCGGCGTGATGTACATCAATTCTAGTTTGGCCAGACATTTGGTTAGTCAC
ACTAGTATCCctttgaaatgcatgtcaaagATCAATATACTGCAGAAGTA
TTTCATTATTTACTTAACTTTTGAACAAGTAAATAATAAagggatttatg
aaaaaatgaactGGTACTTTTCAAGCAAATTaacatttcaaaaactttaa
aaatttcctACAATTTGATCTGTAGACCAATGTCAACCTTAAAAACCATT
ATTGCAAATAATGAATTTTTAGTTGGCTGGTAATTTTGGGAGCGTAGCTA
GAATAATTCGAGCAGGGGATTTAGAGGGGGGGGAGTTCTAAAGCCACAAG
CAGCCAGGCTCTAGCCCTTTAACCCAAAATTGgctattttaaaaaaattt
taaaaaggaactaagaaatttaatttttagatGATTAAAAAATAGGAAAG
AAGCCTTGATAAGCCTATAGCCTAGGTAAATTTTAaccaaacaaagtgaa
aaagtaAGCTTCAGAATGACCAGTAATTACCGGTTGCTGGCTGCTATTTG
CAGCACTTAAAACTGATTTGAAGAACAACTTCACAGGAAAAAATATCATC
CAGGGAAGCTCAAGAAACCTGCTTATCTCTGAGCAGATTGTCATATTCCA
TGTATGGCACACATTCACATGGTTTTCTAAGAGAATTTGCCAATGTCTTC
GGACCGCTTCAATCTCTTTCAATTTCATCTAGTTTTAGTATGAATATTAA
AAAAGAGTACAGTGTTtgactaaagcaaaacaatggcACAAAATCATAAA
CGGAAACATAAGAACCAAGTTacatttactttgattttaaggcaaaaaaa
aacaacaacaaggcTTTGAATGTTTTGGTCTAAAAGGTTTTGTGACAACT
GGAACCTAAAAATGACCTTAGGTTCGTGGCCAACTTCCTAACTAGGgtta
aattttattcaaatctaACTGGGGGCTTTATTCTGATAAAGTGCATTTTA
AAAACTAACCCATCATTTTAGGAGCCAGATCCATATAAATAAATgcataa
aataataaaataatgacACAATATCCTGCAATATCTGTCAAAATTTTCCT
ATACAAAAGGTCATGCCCTAATTTTTTGAGCCAAATATGAAAAGTTAGGT
CTGAACAATATTGGTCATTTCCTGACCTTGTGTACACTGCTTGTAATTCT
GTGTAATTGATTATGTTATTTTGTTTCATATTCTGAAAAAATGGTTCAGG
AATTAGGAACTTGATAAATCTCCTGTTTTTAGGGCCATGCCTGAATGTTG
TTTGCTTTTTCATgttccaaaaaaaaatgaaaaattgaccaattaaCAAG
TTTaccttcaaaaattgtttttcagtTCACTGAAGAAAGGATTGGCAGTG
CTGAAAAGACAGTCTACGATGCTCAATTTGAGAACCTCAATCTTCGTGCT
GATCGAACCAAAAACATCACTGAGAAACTTCTACGTCAGGGAGAAGCTAT
GGTTCAACCCAATCCAAGTAAGAGTTTTAGTTCACTTtgagtttgaaaaa
agaaaataagttcTTCGcacaattttaaatttcattttcacagaTTACAT
AACTCAAATTATTTGTTATCAATAgcaattgggctattccagaaaaattt
gTATCCCATATGCTGATGAGGTCTTTTTTAGAAAAGGTGACCTCcctgga
ttttgaaaaatgaaaattggattttttcatatttttgaccACCCTGGATC
ACCACCCTGGATCTTTTTAATAAATTCCAGATCCCCCTAGACATCATACC
TCCCGAACAATTCAAAGAGgatacagactatttctggaatagcccaatga
tACTAATGGGTTTTTTTCATAGCTTTCAAAAAAGGTTTAGAGCGTGGAAG
TAAACCTGCGAATGCCGAAATGCAAAGAAATCTTTGTTTAAAATCTCGAC
TTTATTTTAGGTGTAAGGATAGAAGAATATATGTATGAGAAATTGGATAA
GAAAAATCCTCCACGTCCAACCAATGCTTTCATACTGGGCCAAACAATGC
AAGATGCAAGTCAAGATATCGGCCCCGGTACAGCTTATGGTAAGACGGTT
TGATATGATACCTTATTGAATAGGATGCTTTTACGTCCTAtatttttcgc
gaattttagccgTTTACTTGAACTGAATCTCTATTCAGGACTAGGAATCT
TAAGGCCTAAAATAATGGAAATTAGTTAAAAAGGGGCCGATTTGCGAAAT
TTGGTTCACgcgaaaatttaaaatcttcaatttGCGAGAAAGTCCGCGCA
AAAATGTAACGTCCACGCAACGCATTTGAATGCCACGGTATATGGAATAG
ATCATGATGTTTTTGATTTAACagtttaaatataaaaaaagatcCCCTTT
TCTTCCGTTCACACAGGTTCACAAACTTCTTGAATTTGCTTGAACTCTCC
CTCAGACTCGCTGTATATTCATGCTTAAGTAATTTCgacattgtttttat
tttcgaatATTTCAGGTTCAGCTCTGTCACAATGTGGAGGTACAATGAAG
AAGATGGGAAACGCTGAAAAAGATTTTATGCAGAAGTCCATGTCTCACTT
CTTACACCCTCTCAAAAGCTTCTTGgataatgaaatgaaaaccaTTATGG
TGAGATATCTTTTCTTTTCCcattaattttttgatttggtaTCAGTCTTA
AATAATTTGCTATTATCTATGAATTCGTTACAGTGTAAATTTGTATTGCA
TTTTTGATGTCAGTTGTCTTTTATTGACTCTTTTGTTTGCCACAGTGTTG
ACCTTATACGTCACAAAAAACGTGTGTATCGTCAGAAGGGTTCCTTTAAA
ATGTGACATCTTgattttttaactgttttacaGGATGTCCACGTTTTGAA
TAACCTTTAGTTTCTAACGAGcctttagaccatgttcagacgttacggtt
ccatttcgctccgaaacgaaacggttccgaaacaagtgtgaacgtcaaaa
ttcaaaacgccaaaaaagaagacgttacacagTAAGAAAATATCGCGAAA
CGGTtttgctccacttttttcatcggaatgGAACTGCTCCGTTTNGAAAC
gttaaaaaagaagacgttacacagTAAGAAAATATcgcgaaacggtttcg
ctccacttttttaaTCGCGGAAcagaactgctccgttttcttgctccgtt
ttcttgctccgaaacgttccgaaactaatatgaacactctcgatccgtaa
cgaaaatcacaccgaagcgaaacggaaccgtaacgtctgaataTGATCTT
AGTTTCTAACGAACCTTGATTGCCTTTTTATACGAATTCTCCCcttttac
agaaagaaaaacgagcACTGGAAGTGAAGCGACTTGATTTAGACGCGTGT
AAAAACAAAGTCAAGAAATCTCAAACCCCTGAAAAAATGCGACAGGTAAG
AAATAAacttaatatttttaaagacttcTCTCCAGCTAAACTGATTCTCA
AAAAGTACTctgcttcttcatttttcattcttcCATTCTTCGTTTCAACC
TTCCTAAGGCCAACTTTTTGggtaaaattgataaatttgacGGAANCTAA
GGTAAACCTCTCCAAACAACCTTCCTATGGCCAACTTTTTGggtaaaatt
gataaattagaCGGAAATCTTTTATGTCATGTGGATGTAATAGTAATATG
GATAGACAAGTTCGCAGACCTATCTGTGAGCACACGGGCCTTCTCTATGA
ACCGCACTTGATAtcgtttacatttttttttaaaaagtagaGTATTTTTC
TTGGGCTCCATCGGACTTTCAACTTGAAATTCTTATCCTTGATTTTTTCG
TTCATTTCGTTGGCTTCTTGGCACAGTTCCTTAATTATTTATCATTCATT
TTAGGTCAGATCTTCTATCATTCGGTATTGCTGAAAACCGTTTCGTTCGG
TGATGGGTTTCAGCAAAGTTTTTTTTGTCTTCCTCATTTGCTCATTTACT
TAACTCTTTTTTTTCAGGCTGAATCCGAATTACGAGCTGCTCAATCAGAT
TTCGACCGACAACAAGAAATTACGAGGTTGCTTTTAGAAGGCGTCTCCAC
TGCACATGTGagtatcattttcactgaaaccAAAATTCATTAGTAGATCA
TCTGAGTTACGGAGGGAAAAGAAGACCCGAAGGCACTAAGACAAGCGGGC
AGAAATGTGCGCCAATAGAATTGATTTCTGAAATTGCACCTTTACTTTAC
ATTGCAGTTGAGAATTTGGTGGGGTTCATATCTTCCCTATTCTAAAATGG
AAGTTGTGAGTGAAGAAAAATTATGCGATTCGCATTATTTTATTCTTCCT
CTTTAGAGAATATTTCACTCAGCAAATCTTTTCATAATCGAAAAATGTTT
GCTCACTTCTTTTGCTTGTTGTTTAGGGCAACCATTTAACAGCTTTACAT
AGTTACGTTGAAGCCTTAGGAACCTACCATCAACAATGCCAATCGTATAN
gtgtcaaaatttgaatcaTTGTAGGAAATCCACAAAGGCGGTTTTTCGAC
GATAGACCCTCCGAAAAGCCACCCAGACACACCCTTTAAGGCTTTCACTG
ATAATGACACTTTGGTAAGNCTCTTATTTCGTTTTATTTTTTGGATGAAT
AAAATTCATTAAATGTCCTTTTTTAAGGTTTTAGGAAAAAAACATGCTAG
GGTTAAACAAAGAAAACTACTTGCTAGTTCCCTTGTTTTTTGAGGTATCA
ATATCAACCGCTTGACAATCTGCTATACTATTatatacagtggaacctct
aattagcggacaccatcggggaaaggggttggtgtccgctaattagaagt
gtccgccttttagaaacttttgatctcggagctccaattttgaaattagg
ctatcccagggtgtcgaaataccaaattggggtctaaagtacttatctgc
agacactaggccatagaagaacaagagaaaggttaATAAAACGCaacaat
tcaatttttaacaaataaaagaaaatctagaaatataacaccaaaattga
aaatacaattcgttgaatgggtcaagggaaaactggaaatttgtNCCAAT
TCTTAATTCGTCTTTTTTTCTGCTTTGCTCAAACTTTTACCCTTTAAAGC
GACAAGAAGCTTATGCTATATGCTAAGCTAATGTGAATACatgttttcga
aaaatttatgatttttgaacTTGGGTAAATTAttgtcaaaagttttcaaa
tacCATTTTGGGTAATTTACAGACAAGGATAAACGCCCAAGATTTTNcct
aaattaattttttcgattttggacgtctgtgacccgtttgatattcaatg
tccgctaattggagagctaaaataggggttttggccatttcgtgcgaaaa
aatttNTTTACAGACAAGGATAAACGCCCAAGATTTTAGAACTAAAACAT
AAAACTAAAACGGTACTAACCTCAAGTAATATTAACTTGTAATGCTACAT
CTCTATAGCTAATATGTAAACTCTACATTTAACAACGGTCATGACTAAAA
AAGGTGAAAGTGGTTTCTACGAAGCCAATCTCTTCTAACTAACTTCAATA
ATGTTGAAATCGAATACAACACGATANtaattgtccgctaatcagaggtg
tccgccttttagagtgtccgttaattagaggttttactgtactACTATCC
TTTAAGTGGTTCTGCTTAAGTTATTGAGCACAAGCTTCTTGCATCATTGT
AAAGTGTATAGGAAAATATTTGCAAGTATGCTAGTCTGCGTATAGTCACN
ATTTTTTTCATCTCACCAGGTCGTAAATGTGTACAGTATTGAGGGAATGC
ATTCGGATTACATGATGGCACAACGTGGACAGCAAAAAGGAAAAGTACCA
ATCTCCTATCTCGAACTtttgtaaattgtaaaaatccattaaaaacataa
tttaattTATTACAATTATACATACCTAAATAGTTTGATTCGATTTTTTG
TTCTGTTATGAGTTGAATGGTAATATTTTGAAGTAATTAACATTTTTGCA
GTAAGGGGTTTGGTCTGATCTTGTTGATGCGATGTAGTAAGACCATAGTG
AGATTTGGTTTCGTAATTTTATTGGACCGGTCCTTTGAAGATTCCTCTTG
TTTGAGATTCTGCAAAATGTAACACTGTAAAGTCTCATTCTTACAGAACT
TGATATTCACATTCAAGTATGGCAGTGTAGGTTTCCGGGTTTTTAATTAG
GAATATTCTTCGAAATTTTGTTTAGTTaagaaaagttatttttcaGTACT
TGAAATAATTTGGTGATTTTAATTCATTTTCTTACAAATTACTTTTAATG
TTAAATTCTTATGTTATAATGAATTGAATATAGCATTTTTATACCGAAAA
TGTTGATGGTTTATTCTTCCCGTTTATCTTTTACGACCCTCTTGATTAtt
ttcacacccctgtctcacagccctggtggaaTTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036124XLOC_036124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057326-exon-scaffold_288-1491911889:246703..246777TCONS_00057326-exon-scaffold_288-1491911889:246703..246777Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1510915933:246703..246777TCONS_00057326-exon-scaffold_288-1510915933:246703..246777Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1575043694:246703..246777TCONS_00057326-exon-scaffold_288-1575043694:246703..246777Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1491911889:251378..251519TCONS_00057326-exon-scaffold_288-1491911889:251378..251519Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1510915933:251378..251519TCONS_00057326-exon-scaffold_288-1510915933:251378..251519Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1575043694:251378..251519TCONS_00057326-exon-scaffold_288-1575043694:251378..251519Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1491911889:251963..252091TCONS_00057326-exon-scaffold_288-1491911889:251963..252091Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1510915933:251963..252091TCONS_00057326-exon-scaffold_288-1510915933:251963..252091Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1575043694:251963..252091TCONS_00057326-exon-scaffold_288-1575043694:251963..252091Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1491911889:252518..252651TCONS_00057326-exon-scaffold_288-1491911889:252518..252651Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1510915933:252518..252651TCONS_00057326-exon-scaffold_288-1510915933:252518..252651Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1575043694:252518..252651TCONS_00057326-exon-scaffold_288-1575043694:252518..252651Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1491911889:253355..253447TCONS_00057326-exon-scaffold_288-1491911889:253355..253447Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1510915933:253355..253447TCONS_00057326-exon-scaffold_288-1510915933:253355..253447Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1575043694:253355..253447TCONS_00057326-exon-scaffold_288-1575043694:253355..253447Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1491911889:254020..254109TCONS_00057326-exon-scaffold_288-1491911889:254020..254109Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1510915933:254020..254109TCONS_00057326-exon-scaffold_288-1510915933:254020..254109Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1575043694:254020..254109TCONS_00057326-exon-scaffold_288-1575043694:254020..254109Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1491911889:254429..256490TCONS_00057326-exon-scaffold_288-1491911889:254429..256490Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1510915933:254429..256490TCONS_00057326-exon-scaffold_288-1510915933:254429..256490Clytia hemisphaericaexon
TCONS_00057326-exon-scaffold_288-1575043694:254429..256490TCONS_00057326-exon-scaffold_288-1575043694:254429..256490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:246703..256490 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11563	0	0.137747	0.13451	0.901773	1.64825e-09	0	0	3.12131	3.69632	1.31613	1.34944	6.46075	3.84173	0.950859	0.0961416	0.764928	0.363812	7.36666	6.87929	0.538069	0.408712	0	0.133513	0	0	0	0	0.174787	0.168612
Blast
[Close]
BLAST of TCONS_00057326 vs. Swiss-Prot (Human)
Match: SHLB1 (Endophilin-B1 OS=Homo sapiens GN=SH3GLB1 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 5.213e-75
Identity = 121/228 (53.07%), Postives = 166/228 (72.81%), Query Frame = 1 
Query:   52 TGLTRAKQFTEERIGSAEKTVYDAQFENLNLRADRTKNITEKLLRQGEAMVQPNPSVRIEEYMYEKLDKKNPPRPTNAFILGQTMQDASQDIGPGTAYGSALSQCGGTMKKMGNAEKDFMQKSMSHFLHPLKSFLDNEMKTIMKEKRALEVKRLDLDACKNKVKKSQTPEKMRQAESELRAAQSDFDRQQEITRLLLEGVSTAHGNHLTALHSYVEALGTYHQQCQSY 735
            T L+RA QFTEE++G AEKT  DA  ENL  +A+ TK  TEK+++Q E ++QPNP+ RIEE++YEKLD+K P R  N  +LGQ M DA  + GPGTAYG+AL +CG T K++G A+++ +Q S  +FL PL++F++ + KTI KE++ L+ KRLDLDA K ++KK++  E    +E ELR  QS+FDRQ EITRLLLEG+S+ H +HL  L+ +VEA  TY+ QC  Y
Sbjct:   17 TFLSRAVQFTEEKLGQAEKTELDAHLENLLSKAECTKIWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRIGTADRELIQTSALNFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETRNSSEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQY 244
The following BLAST results are available for this feature:
BLAST of TCONS_00057326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SHLB15.213e-7553.07Endophilin-B1 OS=Homo sapiens GN=SH3GLB1 PE=1 SV=1[more]
back to top