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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057333 ID=TCONS_00057333|Name=TCONS_00057333|organism=Clytia hemisphaerica|type=transcript|length=2144bpRun BLAST on NCBI protein sequence of TCONS_00057333-protein >TCONS_00057333-protein ID=TCONS_00057333-protein|Name=TCONS_00057333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp MPVDTKLYDILGVSPTASSNEIKKQYKRLARQYHPDKAGAEFEDKFKEISRun BLAST on NCBI transcript from alignment at scaffold_288:560442..584275+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057333 ID=TCONS_00057333|Name=TCONS_00057333|organism=Clytia hemisphaerica|type=transcript|length=23834bp|location=Sequence derived from alignment at scaffold_288:560442..584275+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_288:560442..584275+ >TCONS_00057333 ID=TCONS_00057333|Name=TCONS_00057333|organism=Clytia hemisphaerica|type=CDS|length=15984bp|location=Sequence derived from alignment at scaffold_288:560442..584275+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057333 vs. Swiss-Prot (Human)
Match: DNJA2 (DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1) HSP 1 Score: 358.221 bits (918), Expect = 1.232e-115 Identity = 216/412 (52.43%), Postives = 280/412 (67.96%), Query Frame = 1
Query: 151 VDTKLYDILGVSPTASSNEIKKQYKRLARQYHPDKAGAEFEDKFKEISVAHEVLTDQKKRDLYDRYXXXXXXXXXXXXXXXXDILNHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRRHQRRRGEDTVHPLRVKLEDLYMGKVSKLKLRKKIICAACDGTGGKGNAVQTCYSCHGNGVKISIQSIGPGMVQQVQRVCPDCQGDGEVIDPKNRCKKCLGKKVSEETKILEVRVNKGMMDGQKITFRGEGDQQPGVETGDVVIVVQQLPHEQYTRKGDNLMMKLNIGLTEALCGFKIPIKHLDGRELIISHPQGKIIEPGSTKFIMNEGMPRHRDPSDRGNLFIDFDVVFPEKDFLAHXXXXXXXXXXXXRQEIMDIPDGENGEEIEECHLVELDQSEAGPGA 1386
DTKLYDILGV P AS NE+KK Y++LA++YHPDK DKFKEIS A+EVL++ +KR+LYDRYGE+GL+EG G G GM+DI +HIFGGG G G R R+ RRRGED +HPL+V LEDLY GK +KL+L K ++C+AC G GGK AVQ C +C G GV+I I+ + PGMVQQ+Q VC DC G+GEVI+ K+RCKKC GKKV +E KILEV V+KGM GQ+ITF GE DQ PGVE GD+V+++Q+ HE + R G++L M IGL EALCGF+ KHLDGR++++ +P GK+IEPG + + EGMP++R+P ++G+L+I FDV FPE +++ +KL EL LLP R E+ +I E EE L E D + G
Sbjct: 5 ADTKLYDILGVPPGASENELKKAYRKLAKEYHPDK-NPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQS-------------------------RSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNIIG-----ETEEVELQEFDSTRGSGGG 385 The following BLAST results are available for this feature:
BLAST of TCONS_00057333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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