TCONS_00057338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057338
Unique NameTCONS_00057338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057338 ID=TCONS_00057338|Name=TCONS_00057338|organism=Clytia hemisphaerica|type=transcript|length=522bp
GAAATTCTTAAAGTTTTTTGACGATTGGGATGACCAAGTAAACATCCAAG
AAAACTTGAAGGCTGACGAAAAAGCCAGGTTGAAGCTTTCCAAGCAAACA
TTAACTGGATTGCGCATAACAACAATGTCATTCATCAAACTGGGGAAATT
ACTCTTTGATGAAGAGAATGCAGGGTTCTTTCTCTCGGAGAAGATATCGC
AGGACCCCGTGGAAGAGTATTTCTCGAAGCAACGAGCAAAGGGAGGCTCA
AATGAAAATCCAGACCTTAATATGGTAAATCGTAACGTTTTAGCGCTCGA
TGTTACTGGAGATGAACTGCTCCAGGTTTTGAACGGGAATGTCCGAAAAA
ACAAAAAGGACCGTCAACAACACACGTTGGACGTAACGGATATGACACGA
TTACCGACGAGGAAGAGAAGTAAGCCATGAACCATCATGAGACAATTTAT
TGTTACTGACATTACGAATGATTTTTCTGAATGAATTTTGAACTAATCTT
TTGCTTGTTCTCCAGAAAAGTG
Run BLAST on NCBI

protein sequence of TCONS_00057338-protein

>TCONS_00057338-protein ID=TCONS_00057338-protein|Name=TCONS_00057338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
KFLKFFDDWDDQVNIQENLKADEKARLKLSKQTLTGLRITTMSFIKLGKL
LFDEENAGFFLSEKISQDPVEEYFSKQRAKGGSNENPDLNMVNRNVLALD
VTGDELLQVLNGNVRKNKKDRQQHTLDVTDMTRLPTRKRSKP
Run BLAST on NCBI

transcript from alignment at scaffold_288:675713..676571+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057338 ID=TCONS_00057338|Name=TCONS_00057338|organism=Clytia hemisphaerica|type=transcript|length=859bp|location=Sequence derived from alignment at scaffold_288:675713..676571+ (Clytia hemisphaerica)
GAAATTCTTAAAGTTTTTTGACGATTGGGATGACCAAGTAAACATCCAAG
AAAACTTGAAGGCTGACGAAAAAGCCAGGTTGAAGCTTTCCAAGCAAACA
TTAACTGGATTGCGCATAACAAGTAAGATACATTCTTGAAGCAAATATCA
ACCACATTAGTATCAGGCTATTGTATATATATCTATATATTTCGTACTAA
AAGGTCTTAGGACCCATTATCCGTTTGGTTATGCTGTCTATAACTTAGGC
TGAACTTTTTTCTTACTATATTTTGCTATGGTATGGCATACAGTATGATA
ATCTTCCTCGTTTTGAAGATCGATAAGGTCGATATTATACGTAAGGTAGA
GTGTTATTGTGACGTTATTTCCTTTTTCAATCTGCCCATTTTTTGAGGGG
AAAGTTCATGCGATTTGAGTTCATTTTCAAATCTAgtaattgattttctt
taccTGCAGCAATGTCATTCATCAAACTGGGGAAATTACTCTTTGATGAA
GAGAATGCAGGGTTCTTTCTCTCGGAGAAGATATCGCAGGACCCCGTGGA
AGAGTATTTCTCGAAGCAACGAGCAAAGGGAGGCTCAAATGAAAATCCAG
ACCTTAATATGGTAAATCGTAACGTTTTAGCGCTCGATGTTACTGGAGAT
GAACTGCTCCAGGTTTTGAACGGGAATGTCCGAAAAAACAAAAAGGACCG
TCAACAACACACGTTGGACGTAACGGATATGACACGATTACCGACGAGGA
AGAGAAGTAAGCCATGAACCATCATGAGACAATTTATTGTTACTGACATT
ACGAATGATTTTTCTGAATGAATTTTGAACTAATCTTTTGCTTGTTCTCC
AGAAAAGTG

Coding sequence (CDS) from alignment at scaffold_288:675713..676571+

>TCONS_00057338 ID=TCONS_00057338|Name=TCONS_00057338|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_288:675713..676571+ (Clytia hemisphaerica)
AAATTCTTAAAGTTTTTTGACGATTGGGATGACCAAGTAAACATCCAAGA
AAACTTGAAGGCTGACGAAAAAGCCAGGTTGAAGCTTTCCAAGCAAACAT
TAACTGGATTGCGCATAACAACAATGTCATTCATCAAACTGGGGAAATTA
CTCTTTGATGAAGAGAATGCAGGGTTCTTTCTCTCGGAGAAGATATCGCA
GGACCCCGTGGAAGAGTATTTCTCGAAGCAACGAGCAAAGGGAGGCTCAA
ATGAAAATCCAGACCTTAATATGGTAAATCGTAACGTTTTAGCGCTCGAT
GTTACTGGAGATGAACTGCTCCAGGTTTTGAACGGGAATGTCCGAAAAAA
CAAAAAGGACCGTCAACAACACACGTTGGACGTAACGGATATGACACGAT
TACCGACGAGGAAGAGAAGTAAGCCATGAAAATTCTTAAAGTTTTTTGAC
GATTGGGATGACCAAGTAAACATCCAAGAAAACTTGAAGGCTGACGAAAA
AGCCAGGTTGAAGCTTTCCAAGCAAACATTAACTGGATTGCGCATAACAA
CAATGTCATTCATCAAACTGGGGAAATTACTCTTTGATGAAGAGAATGCA
GGGTTCTTTCTCTCGGAGAAGATATCGCAGGACCCCGTGGAAGAGTATTT
CTCGAAGCAACGAGCAAAGGGAGGCTCAAATGAAAATCCAGACCTTAATA
TGGTAAATCGTAACGTTTTAGCGCTCGATGTTACTGGAGATGAACTGCTC
CAGGTTTTGAACGGGAATGTCCGAAAAAACAAAAAGGACCGTCAACAACA
CACGTTGGACGTAACGGATATGACACGATTACCGACGAGGAAGAGAAGTA
AGCCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036131XLOC_036131Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057338-proteinTCONS_00057338-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057338-exon-scaffold_288-1491911889:675713..675834TCONS_00057338-exon-scaffold_288-1491911889:675713..675834Clytia hemisphaericaexon
TCONS_00057338-exon-scaffold_288-1510915933:675713..675834TCONS_00057338-exon-scaffold_288-1510915933:675713..675834Clytia hemisphaericaexon
TCONS_00057338-exon-scaffold_288-1575043694:675713..675834TCONS_00057338-exon-scaffold_288-1575043694:675713..675834Clytia hemisphaericaexon
TCONS_00057338-exon-scaffold_288-1491911889:676172..676571TCONS_00057338-exon-scaffold_288-1491911889:676172..676571Clytia hemisphaericaexon
TCONS_00057338-exon-scaffold_288-1510915933:676172..676571TCONS_00057338-exon-scaffold_288-1510915933:676172..676571Clytia hemisphaericaexon
TCONS_00057338-exon-scaffold_288-1575043694:676172..676571TCONS_00057338-exon-scaffold_288-1575043694:676172..676571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:675713..676571 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113347	0.110532	0.128338	0	0	0.241577	0.145726	0.136427	0.191031	0.354935	0.803853	0	0.226151	0	1.28725	0.552566	0.170179	0.174428	0	0	0.109591	0.160364	0	0	0.243392	0.434443	0	0	0.125807	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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