TCONS_00057341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057341
Unique NameTCONS_00057341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057341 ID=TCONS_00057341|Name=TCONS_00057341|organism=Clytia hemisphaerica|type=transcript|length=1768bp
ATTTTGACAAGTAATTTTGACTAAATCGCAAAATGATGATTCTTTTTTCT
ACGATCTTTAACTGAactttcatttatattttttagcaaaaataacCAAA
GTCAATAAAATAGAGAAGAAAGAAGCTTATACTTGTAGCATTTGAAAGAT
AGATGAAAGAATGTACCAAAAATCAGTGCGAATTTGCAGACTGAATAGTG
TGAATGGTTAAACAATCTAAAAAGATCGAGACGTTTGCAGAATATGAAAG
ACTTTGATAAGCCTAAGCCAAGTGATAAAGACATCCAGAATTTGAAAGTT
GAGAATCAGACGTTATGTGATCAGATCAGTATATTGAAGTTAAAGtgtaa
aacattcgaaagtgaaACCAAGAACTCAATGGAAAGATTCTCCTGCTTGA
AACACCTGGTCAAGagAGCATGGCGTGGAGATCACGAAGCTTCCAAACAC
GTAGCTAACATCGTTGGGGTGGCACCACCATTGTTCATTTATCGACATGA
CGATGAAGAAGTTGTCGCTTTCCCTAAGTCAAGGGCCATCAATAATTGGG
CATCATTATCGGCAAGTCTTTTGGAACGTTACTACAAACAGCGAGAGGAT
GTCATGTTTCTAAAGAAACGACAATTTCTGATCGAAAGGGAACATTTTCT
CGACTCGCAACTTGATGGTTATATTAATGAAATACCGCGTGATCATCCCG
TTGATAAAGGACTGGACCTCATTTATGCTGTCAATAAGAGCAAACCTTTA
GTAGAAGTGTTACAGCACACCTCTCGTCCCACCTCACCATGGAAGAGTCG
TCCATCTTTCAAGAAGATGAATGATCAGAAGTCACACGCACGTATGATGG
TTTCACCTGTTCAAAGCATGATGACTTACGGGGAGAGTGGAGATGCAGAA
CTACAAATCGATTCCAATAACAACATATTGCCCATCGATTCCTTCAATAT
ACAAAACGAAAATCCAAATGAGAACAAGACCATCGTCTGCTTATCGTCCC
GCAACTGCAGGCCCTTCAATAAATACAAGAGAAAAATCGAACCCTACCGT
AAAAACTGAACGATCAAGGCCTGGTAGTGCTTCAACGTCGCGTACATCAC
AAAAGAGGAGCACAAAAAGTGCAATGGGAAGCTTAAAACGTGACCTCGGG
AATGTCAAAGCAGCCTCGCAAAAAGTTGGCAATCATACGAAGCAACGTCC
TTTCTCAGCTCAATGTGTTGGCGTCAAATATTTTACGGCGTCGTTACATG
ACGTCATTGAACCTTGTACATCGGTGTCGATCGAACGTCAACGGCAACTA
GATGTGGTGGAGAAAAGACTTCAAAAAACAACGCaacttttacaaaagaa
attatcCATAAACCCCTTGAGCTTTGTCTGAATATCAGCGTAGTCAAGAT
GAAAAACTGATTTATCTAGAGTGAAGATTATGATGATGTCAATAGTTTGC
GTTAAGTTTGACTTTTAAAAACTGTCagtttttactcatttttgctagAC
TGATTTTAACCCGACTTTAGACATTGTATTTTATTCATTACATCTAAACT
CAAATAAGGACAATTTTCAGAATAGTCTGCATAAGTTCTCAAGTATAAAA
TCGAAATCTGGATACAAATAAATCTGTAAATATTATTTGagttaccttaa
aggaagaaattttggcggaaagaaaatttggcggatttggcggatttgac
tgaaatccgccaaattaagttcccgccaaaatttCTTTTTTCCGCCATCC
GCCAAATTAAATTCCCGC
Run BLAST on NCBI

transcript from alignment at scaffold_288:723798..729172+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057341 ID=TCONS_00057341|Name=TCONS_00057341|organism=Clytia hemisphaerica|type=transcript|length=5375bp|location=Sequence derived from alignment at scaffold_288:723798..729172+ (Clytia hemisphaerica)
ATTTTGACAAGTAATTTTGACTAAATCGCAAAATGATGATTCTTTTTTCT
ACGATCTTTAACTGAactttcatttatattttttagcaaaaataacCAAA
GTCAATAAAATAGAGAAGAAAGAAGCTTATACTTGTAGCATTTGAAAGAT
AGATGAAAGAATGTACCAAAAATCAGTGCGAATTTGCAGACTGAATAGTG
TGAATGGTTAAACAATCTAAAAAGATCGAGACGTTTGCAGAATATGAAAG
ACTTTGATAAGCCTAAGCCAAGTGATAAAGACATCCAGAATTTGAAAGTT
GAGAATCAGACGTTATGTGATCAGATCAGTATATTGAAGTTAAAGtgtaa
aacattcgaaagtgaaACCAAGAACTCAATGGAAAGATTCTCCTGCTTGA
AACACCTGGTCAAGaggtaaaaagtttttttgtttgtcatgcaacaaata
aaaaactgaaaatattactCCGTGACCATGATTTTTGGTGAAATCTTCTA
ATATACAATGAATTAACCCAAGAAAAAGGTAACGAAAAACGAAAgcaatg
ttttaaaaataactctcCAGCATGGATCGGCTTTTCATTTTAGGTCGTTA
AACTTTAGTATTCAAAATCCTTTAATCAAATTTTGTATGGACTCTATAGT
AAATATCGTCTTCTTAAATTCTTATTTTGTTGCATGACATCCACAGAGCA
TGGCGTGGAGATCACGAAGCTTCCAAACACGTAGCTAACATCGTTGGTAA
gatattttctttataatttttgaaaaaaataaaatgtttgtcCGTGGATT
TTATTAGTAAATTGGCAGGAATGTTGGGCCATCTGTCAGAGCTGATCATg
atattatttgaaaaattttttcttctggGCCAgattattctcaaaaaaat
aagaaaagacgaaaaacaaaattttgttcattcttGACGTTTCGATGCTT
CTTGTATCATGATCACAAGCAAATAGTTAGCTTACAAGCAAAAACGtgtt
gaaaaaacaaaatttcaaattcatgatattattCTCATATTTTTCAAGTA
TTGACTATGCACATTATTATGGTTATTGGAACTgttcaaaaatgatttct
tcTCTTTTCAGGGGTGGCACCACCATTGTTCATTTATCGACATGACGATG
AAGAAGTTGTCGCTTTCCCTAAGGTATTTTCATGGTATATATACTTAGGT
GGTGCAGTACGTCTATTTTTCTATCTTTAGAAATTCGACGTTAAAGGTTT
CACTATCTGATAATTTAGCACAGATAATGCCTTGATGTAACTTTTTGGAC
TAAGTATGTTTCAAGCTAAAATCGGGCTAAAACCTACTGTTCTACAGAAT
CTTGTGGATTTGAGGCAATTTGAGGTATCATGTTGAATTATGGTGTATGG
TCTTAAAATTCAATTGCTTGAACTGAATTAAGCCTGGTCATAAATTGAAA
AGGTGGCATTTTTCGctttaaaatcaaacttttttcgaatttttgtatCA
TTTTCCTTTTCCATCAGTCAAGGGCCATCAATAATTGGGCATCATTATCG
GCAAGTCTTTTGGAACGTTACTACAAACAGCGAGAGGATGTCATGTTTCT
AAAGAAACGACAATTTCTGATCGAAAGGGAACATTTTCTCGACTCGCAAC
TTGATGGTTATATTAATGAAATACCGCGTGATCATCCCGTTGATAAAGGA
CTGGACCTCATTTATGCTGTCAATAAGGTATTTTCTTATACAGCTGCTAT
GAGATTTGGTTTGAACAGTTTATTTCTTCACATAATATTCATGCatacct
tatcagggaaaaaaatgtcggagttttatttagtcggggttttttttcgc
cggggaaaaatttcgtcacctagaggtattttcgtcactttcccccgacc
aaagtttcaaattcgtcacttttccccgacgaaatttacaatttagtcac
tttcaccgagctaaattgtccaaatgaaatggtttccttcactagctcga
aaaaagatcttgtaattcgacgtttaaagcactaatttcggttaataaag
gtgtaaaaaaattagattttaattttggttgggttttgaaaattgggtaa
aagttttggtcggggataaaaaaatcggttaaaagttttggtcgggtgat
aaaatatcggggaaaaaattcgtcgggggaaaatttcgtcaccccctcaa
aattttcgtcactttcccccgacattttttcccccgataaggtattatgA
GATGGAAAAAGGAATATTTTACACCCAAATTCCTATCGATCAAtactttt
caatcaatttatcATAATTTCGTTATAATATTAATCTTAGCTCGCGACCC
CCATCTATGTAAAAGAGGTagcaatgtttgaaaattgcaaAAGAAGGCAC
CGACAGGAATACTTGTCTGCAAAGTTCTTAGCATCCGTCTCCCTAAATCC
taagatatttttataaatcGATAAGCCAAATTGATTCATATCATGCATCT
CGTTCAAGTTCATGCTATCATTTGGGTCAATTTAAATAATGAGAAATTCC
TGATATTACGACCCTATAACAGTTTGAAAAGTGAGGGGTTCTCGTTGTAC
GCTGATTTTCAGGGGAATAACATCAAATCTTGAAAAAGGAGAGGGATCTC
CTCACTACCCCCTTTTCTAAATGAATTCCCCCTGCCATATGATCCACCCA
AGCTATGGTGACTCCCTTCTGAGATGTACAGTGAGCAAGTTAGCATGTTT
ACCAATAAAATCTTTAGTGTTTAATTTCGAACTACCTGGTGCATTTCAGA
GCAAACCTTTAGTAGAAGTGTTACAGCACACCTCTCGTCCCACCTCACCA
TGGAAGAGTCGTCCATCTTTCAAGAAGATGAATGATCAGAAGTCACACGC
ACGTATGATGGTTTCACCTGTTCAAAGCATGATGACTTACGGTATTAAAG
CCATGTGCATGCACTGCATATTTTCCTACACTAAGGTTTATTTAGAtgag
ttgtttttgttttcttattcatcaatttttaaatttaaaagagtGGGCTA
TTGTCAAATCAATCTCAATTAAATTTCAATTATCATATCAGGTTTTAACA
TCATACTCGGGTTATCCCTAATTTCAGATAAATtggttaaaagaaaaaat
tccaaGATTTCGAGACAAGAAGATAAACCATCTaacgcaaaaattaaaaa
aataaggtCTTCAAAGGTTCAAATACTCTTCTTtgcaaaagttttaattt
tcttcttcatcaaattttttcattacgatttttaaatttttcagattaaG
AAATAGTTGGCCTActacagaaaatgtataacatattATCCGTTTGATAT
TTCTCTACAGGGGAGAGTGGAGATGCAGAACTACAAATCGATTCCAATAA
CAACATATTGCCCATCGATTCCTTCAATATACAAAACGAAAATCCAAATG
AGGTAGCTCTTAAGCTTAGTAACCCACGGTTCTAAACTCTTTGGATTGTT
ATTTAAATTACTTCTTTGTAGAAAATAGATGGATCGATTTCATACTCAAA
TTATAAACCAATAGAAAACTGTATTAACACAAGtttaacctttttatttg
aaGGTGTCACCACCTACTACTTGTAACCCAACATCACAAGCGAAACTTCC
ATCTTCTAGAACAAGACCATCGTCTGCTTATCGTCCCGCAACTGCAGGCC
CTTCAATAAATACAAGAGAAAAATCGAACCCTACCGTAAAAACTGAACGA
TCAAGGCCTGGTAGTGCTTCAACGTCGGTAAGTACAACCTTGCACTTGTA
ATATACAAAAACCCTTGACTGTATTCTTGTTTATACTTTggtctttattt
tgaaaactctTATTGATAACATTCATTTCTTTGCCCTaacttttataaaa
ttttgattttaattgtcATTTTCATCTCCTCCACAGCGTACATCACAAAA
GAGGAGCACAAAAAGTGCAATGGGAAGCTTAAAACGTGACCTCGGGAATG
TCAAAGCAGGTGAGTCACCCCTCATCCCGACACACTACATCACATAAATC
GTAGTTATTTTTAGGTCTGGACACTTCCCCTCCATGTTTGTGAAAAATGT
ATGAGTACATGTACgttcttaggtgccaaataatcacttgttaatttttc
gaaaattttccaaccccccggacattATTAAGACTCCCCCcctcgtttat
taatttttaagaatattttcagttagcAAGAAGAAGTCGCCTTATTTTTC
TCcaaaaacctgatttttaaAGTACAATCTCCAACCCCCCATGCAATTAA
GTAGGTCCCCACTGtttatcaaaatttcgaaaattttccaaccccgtTTA
ATCAAACTCCCCCCCccatttatttggcacctaagagtacttgCTTTTTG
CTGCTTTTAACGGAAAAATTAGGAATTCATTTAATCTCATAATGTTCTGA
GATCATCCATTCTTCTCCCACAACACTATGCTCTAAAGGGGTATGGTGAA
TGTAATGAATTGAATTTGTTCAACAAACATCCTTAAAGCGAAAGCGACTG
TGCTCTAATATTTAGAATGTACAGATTAACCGGAGTAACCAGGATCTGCT
CGAAGATTAGAATTTAGTCTGTGGAGTTCTTTTAGTTTTCCAGTTCTCCT
TTCTACTCCCCTTTTTTTCTGAAGGTGATTTGTCAATCGTCAATCTTTAT
CCCTtgccattctattttattcaaTTAATGATTCCACCACAATAAGTATT
CTCTGTTTTACTCATGACAGCCTCGCAAAAAGTTGGCAATCATACGAAGC
AACGTCCTTTCTCAGCTCAATGTGTTGGCGTCAAATATTTTACGGCGTCG
TTACATGACGTCATTGAACCTTGTACATCGGTGTCGATCGAACGTCAACG
GCAACTAGATGTGGTGGAGAAAAGACTTCAAAAAACAACGCaacttttac
aaaagaaattatcCATAAACCCCTTGAGCTTTGTCTGAATATCAGCGTAG
TCAAGATGAAAAACTGATTTATCTAGAGTGAAGATTATGATGATGTCAAT
AGTTTGCGTTAAGTTTGACTTTTAAAAACTGTCagtttttactcattttt
gctagACTGATTTTAACCCGACTTTAGACATTGTATTTTATTCATTACAT
CTAAACTCAAATAAGGACAATTTTCAGAATAGTCTGCATAAGTTCTCAAG
TATAAAATCGAAATCTGGATACAAATAAATCTGTAAATATTATTTGagtt
accttaaaggaagaaattttggcggaaagaaaatttggcggatttggcgg
atttgactgaaatccgccaaattaagttcccgccaaaatttCTTTTTTCC
GCCATCCGCCAAATTAAATTCCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036134XLOC_036134Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057341-exon-scaffold_288-1491911889:723798..724213TCONS_00057341-exon-scaffold_288-1491911889:723798..724213Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1510915933:723798..724213TCONS_00057341-exon-scaffold_288-1510915933:723798..724213Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1575043694:723798..724213TCONS_00057341-exon-scaffold_288-1575043694:723798..724213Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1491911889:724494..724543TCONS_00057341-exon-scaffold_288-1491911889:724494..724543Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1510915933:724494..724543TCONS_00057341-exon-scaffold_288-1510915933:724494..724543Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1575043694:724494..724543TCONS_00057341-exon-scaffold_288-1575043694:724494..724543Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1491911889:724909..724970TCONS_00057341-exon-scaffold_288-1491911889:724909..724970Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1510915933:724909..724970TCONS_00057341-exon-scaffold_288-1510915933:724909..724970Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1575043694:724909..724970TCONS_00057341-exon-scaffold_288-1575043694:724909..724970Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1491911889:725315..725524TCONS_00057341-exon-scaffold_288-1491911889:725315..725524Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1510915933:725315..725524TCONS_00057341-exon-scaffold_288-1510915933:725315..725524Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1575043694:725315..725524TCONS_00057341-exon-scaffold_288-1575043694:725315..725524Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1491911889:726597..726738TCONS_00057341-exon-scaffold_288-1491911889:726597..726738Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1510915933:726597..726738TCONS_00057341-exon-scaffold_288-1510915933:726597..726738Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1575043694:726597..726738TCONS_00057341-exon-scaffold_288-1575043694:726597..726738Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1491911889:727158..727249TCONS_00057341-exon-scaffold_288-1491911889:727158..727249Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1510915933:727158..727249TCONS_00057341-exon-scaffold_288-1510915933:727158..727249Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1575043694:727158..727249TCONS_00057341-exon-scaffold_288-1575043694:727158..727249Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1491911889:727457..727574TCONS_00057341-exon-scaffold_288-1491911889:727457..727574Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1510915933:727457..727574TCONS_00057341-exon-scaffold_288-1510915933:727457..727574Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1575043694:727457..727574TCONS_00057341-exon-scaffold_288-1575043694:727457..727574Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1491911889:727734..727806TCONS_00057341-exon-scaffold_288-1491911889:727734..727806Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1510915933:727734..727806TCONS_00057341-exon-scaffold_288-1510915933:727734..727806Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1575043694:727734..727806TCONS_00057341-exon-scaffold_288-1575043694:727734..727806Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1491911889:728568..729172TCONS_00057341-exon-scaffold_288-1491911889:728568..729172Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1510915933:728568..729172TCONS_00057341-exon-scaffold_288-1510915933:728568..729172Clytia hemisphaericaexon
TCONS_00057341-exon-scaffold_288-1575043694:728568..729172TCONS_00057341-exon-scaffold_288-1575043694:728568..729172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:723798..729172 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12136	3.44049	2.67016	4.49532	1.28918	1.25281	2.61597	2.28047	2.51079	2.09714	2.07423	2.45392	2.73357	0.00423745	2.57047	2.51092	3.20802	2.2038	1.59743	2.427	2.8519	3.17855	1.14837	1.40589	2.0134	1.21842	0.755838	0.671463	0.451208	0.357333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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