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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057343 ID=TCONS_00057343|Name=TCONS_00057343|organism=Clytia hemisphaerica|type=transcript|length=1921bp
aataaaagtatttaaagagaagaaatataaaaaacaatgaGCACATCAAC
GTCTCGTGGCAACGTCCAATACAAGATCACACCAGGAGCATTAGTATGCA
ATGAAGCTGAAATTACCGGCAATGTCACCATTGGTGTAAGGACTGTTGTT
CATCCAAAAGCCAAAATCATCGCCGAAAGTGGTCCCATTATAATCGGAGA
TGGAAATTTGATCGAAGAGCAAGCCGTCATCATCAACCGATCACAGAATC
CTTTAACAATCGGACATAATAACGTCTTCGAAATCGGAACTCACGTCGAA
GCGATCGCGATCGGAGATAATAATGTTTTCGAAGCCAAAACAGTCGTCGG
ACCGCATGTGGAAGTAACACATGGTTGCGTGGTCGGAGCTCTTTGTAAAT
TGACCGGTACCGAACGGATAGCAGAGAATACAGTTATATTCGGACAAAAC
AACGACCGTAGACGAGCTGCTGAACGGCCCGCACCACAAATGTTACAATT
AGACTTTTTGACGAAGATTTTACCGAATTACCATCATTTAAAGGGGCGTG
GTAAATAAGAGGAATTTCTATATCATCGATTCAGTTATAGTGGTCCTAAA
AGattgctgaaaattttaaattaattgtAGTAATATGACGGATGGACTCG
ATTGTTGCGACCCTGAGGTACGCCGAAGCTTATTTCAATGGCTAATATTG
TTATCAACAAAGAACTTGATGGTTTGCTTTCACTTCTTTAtaatataaat
aaaacaaagaGTCAGACGATCGGGAAACACTGGAGTAAACTATGTTCGGA
TCATAACTTCAATTTATGACCCTTACAGAAtactcaaaaattgaaatttt
tatttttcttctcagaaattttatttattattatggTATTATAATGCGTT
GTGAACTAAATCGTACTATATATAAGATTCATTAAATCAAACTAAAAATC
GTTGAAATATTTCACAGAACTTCAACTTTGACGACTCGGAAATAAGCATA
ATTTTTGTTAACTTTAAGAAATCAGAATCCGGCACAgctcaataataata
ataattttttttagaaaatctcgAATTGTCcttaatttcaaaaatgatag
cTCAACTGACCAGAGACTTTGTTAAAAAGCATACTTTTTAATATTTCCAT
GAAATTTATACTTCATCAAGATCATCGACCAGTTCTTGTAACTCCGATTC
GATCTTTTCACGTTCCAATCGTTTTTCATTGATCTcgatttgttttgatt
cgatttCTTTCTCCATTCTCTCGATATCACTTCTAGCTAGAGCTTCTTtc
gatttattttctttgatacATGAATCCATACTTTGCGTCGTTTTCAAAGC
GTCTCGCTCGAAATTTTCATTCTGAACATTCGTCTCGGTCAACTTGTCCA
ACTGCTCGCTTTTCCGTCTTATAGTTCCTTCAAGTTTCTCCACCaaattt
tgtttggttttctTCAACGATTTTACTTTCTCAATTTCGCTGAACAACAA
TTGACTCCTCGACCGCGCGTCCTGGAAAGCTCCGCTTAATTCCATATGAT
CTAACTTTGCGCGgcacattttttcttcaatctctACGTAATACTCATCT
CTCAAGTCAGCTTCTTCAGTCAATACAGAAATTCGTTGATTATTTTCCTT
GGTCTGTTTTTCGTACTCGATTGCTTTATCTTCCGCTTTTTTTGTCTTGT
TTTGTATATCCGTCAACTGGAGACGTACAGCTTTGGTTCTTCGTCTAAGG
TCTTCAGACATCAATTCATTTTCGGAGATTTTGTTCTCCAGAGATTTCAC
CATATCTTGTTTGTCTTCCGTGTCTCCATCTGTGTCGTCAATCTTCTGTA
CAAGTTTCTCCATTTTGATTCTTAAAGCGTCCATCTTCGCTGCTTTTTTC
ACTACAAACTGTGAAATCcag Run BLAST on NCBI transcript from alignment at scaffold_288:752036..755674+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057343 ID=TCONS_00057343|Name=TCONS_00057343|organism=Clytia hemisphaerica|type=transcript|length=3639bp|location=Sequence derived from alignment at scaffold_288:752036..755674+ (Clytia hemisphaerica)
aataaaagtatttaaagagaagaaatataaaaaacaatgaGCACATCAAC
GTCTCGTGGCAACGTCCAATACAAGATCACACCAGGAGCATTAGTATGCA
ATGAAGCTGAAATTACCGGCAATGTCACCATTGGTGTAAGGACTGTTGTT
CATCCAAAAGCCAAAATCATCGCCGAAAGTGGTATGTCTTTccttttctg
atattttgcagaTGAGATTTTCCTAGATAAGGCAATAAATTTAAGGGGCA
CAACCAGATTCAGCTTCTTGAGCTGATGTGAAAAAGGTTggtttgttaaa
aaattttacCTTCTGGACTAAATTTTTAGCCCTATCCACTTTAGGAGCTC
AATGGTTATGTCAGTAACTCTTCCAGTATATCATCAAAAGGTTTTTATGT
TTCATTGGATTTGTTAAGATAAGAAGAGGATTTCCTATTATTTCAATAAT
TCTACATCaaaataccgtgaaaagcacaggccaaaatcatatattgacct
gtgccgaccaaaatcgagattctattcagcgcgcaatcaacgcagagaaa
agtaaccatgacgaccatccaagatcttggatgaagttcaaagttgatat
ttctattcccgtcgttgaaaacacaacctaaaaatgtcatcaatgctttt
caaaaagagtcagtgatggagaatcataacataaagatctgcctattatt
ttgattccattaaagtaacattaccataattaatagtttagtaattactg
ttatacatttgggaatcatgtagaagatttcttttgaaaaaaactcattt
caattacatttggaggtttctggggaattcgtaaatagtaaactgcatac
tgatacagtctgctaggcATTGATATGGTagtatttgctcttcatctttg
gtTCTTTCTACAATGATTAGATTGatacatgcgcgataaaatttatattg
ttGGTCTTCAGatgttaatatattctttgaaaacttaacctctgatactc
agggtaacatCAAAATGTCACACTTTTTTCTGATGTTACTTTTTTAGGGC
TTTATATTCCGGATATTTCGATTTTCTCGAATCTTTTTCCGGATCTTTCG
ATTTTCTCGAATCTTTCGAACGTCTCTCAAATCTTATTCAGATCAAAACA
CAAGTAATCTCTTCCTTCAAGACCTAAGCATAGCACTTCATAGCATAAAC
AATGGATTGAATGCTAAAGAAAAACATAACTTTAAGTATATGACCAGCCT
CAGCTCAAATAGGCTCTATGTTAGGGTCTGTGTTACCTTTCGGGGAAGGC
AACCGCATGTTTTTGGTTCTAAAGCATCATAagattttgagacttttttg
agAGAGGGCATGCGAAAGTTTAATGTTCAAAAGGTTGTCGTCGCAAAGTC
GAACTCGAATGTAACGAATCACACAATCGAATAGGACATGTAATTCTGAA
AAGAaagtatgaaaagaaaatcatacTACATCAAGTCTTCTTGTACTGAA
CCACACAAAGAAATATGCTTTATTTAAAGGGTTCCAAAGAATAACAAAAC
GCGAGGATATTCTCCCTTAGTTTCGAACTTTTAACCTTTTTGGTCTTCTC
AAAAATTGTACGAAAATCAGTAGAGTTCAAAAAATCcagttttgttgaaa
atttagTCTCTGCAAGGGTCAGGCTTTAAAATTTGGGTCTGCACGTACCG
GAATCTCCATCCCTAGTACTCTTTGTGACTCCAAccaataaaataagaaa
aaaaatgctACATTTATACCATTAGACCACGCGACTCATCAATTATTCAC
TCTCCCCGTCTGGTAGCCCTAAGAGAAATAATTGGGTAACAAAAAAAGCC
CTATGAAGAATCTTTAAtttaaaaaccttattttttttgcttatcaCAGG
TCCCATTATAATCGGAGATGGAAATTTGATCGAAGAGCAAGCCGTCATCA
TCAACCGATCACAGAATCCTTTAACAATCGGACATAATAACGTCTTCGAA
ATCGGAACTCACGTCGAAGCGATCGCGATCGGAGATAATAATGTTTTCGA
AGCCAAAACAGTCGTCGGACCGCATGTGGAAGTAACACATGGTTGCGTGG
TCGGAGCTCTTTGTAAATTGACCGGTACCGAACGGATAGCAGAGAATACA
GTTATATTCGGACAAAACAACGACCGTAGACGAGCTGCTGAACGGCCCGC
ACCACAAATGTTACAATTAGACTTTTTGACGAAGATTTTACCGAATTACC
ATCATTTAAAGGGGCGTGGTAAATAAGAGGAATTTCTATATCATCGATTC
AGTTATAGTGGTCCTAAAAGattgctgaaaattttaaattaattgtAGTA
ATATGACGGATGGACTCGATTGTTGCGACCCTGAGGTACGCCGAAGCTTA
TTTCAATGGCTAATATTGTTATCAACAAAGAACTTGATGGTTTGCTTTCA
CTTCTTTAtaatataaataaaacaaagaGTCAGACGATCGGGAAACACTG
GAGTAAACTATGTTCGGATCATAACTTCAATTTATGACCCTTACAGAAta
ctcaaaaattgaaatttttatttttcttctcagaaattttatttattatt
atggTATTATAATGCGTTGTGAACTAAATCGTACTATATATAAGATTCAT
TAAATCAAACTAAAAATCGTTGAAATATTTCACAGAACTTCAACTTTGAC
GACTCGGAAATAAGCATAATTTTTGTTAACTTTAAGAAATCAGAATCCGG
CACAgctcaataataataataattttttttagaaaatctcgAATTGTCct
taatttcaaaaatgatagcTCAACTGACCAGAGACTTTGTTAAAAAGCAT
ACTTTTTAATATTTCCATGAAATTTATACTTCATCAAGATCATCGACCAG
TTCTTGTAACTCCGATTCGATCTTTTCACGTTCCAATCGTTTTTCATTGA
TCTcgatttgttttgattcgatttCTTTCTCCATTCTCTCGATATCACTT
CTAGCTAGAGCTTCTTtcgatttattttctttgatacATGAATCCATACT
TTGCGTCGTTTTCAAAGCGTCTCGCTCGAAATTTTCATTCTGAACATTCG
TCTCGGTCAACTTGTCCAACTGCTCGCTTTTCCGTCTTATAGTTCCTTCA
AGTTTCTCCACCaaattttgtttggttttctTCAACGATTTTACTTTCTC
AATTTCGCTGAACAACAATTGACTCCTCGACCGCGCGTCCTGGAAAGCTC
CGCTTAATTCCATATGATCTAACTTTGCGCGgcacattttttcttcaatc
tctACGTAATACTCATCTCTCAAGTCAGCTTCTTCAGTCAATACAGAAAT
TCGTTGATTATTTTCCTTGGTCTGTTTTTCGTACTCGATTGCTTTATCTT
CCGCTTTTTTTGTCTTGTTTTGTATATCCGTCAACTGGAGACGTACAGCT
TTGGTTCTTCGTCTAAGGTCTTCAGACATCAATTCATTTTCGGAGATTTT
GTTCTCCAGAGATTTCACCATATCTTGTTTGTCTTCCGTGTCTCCATCTG
TGTCGTCAATCTTCTGTACAAGTTTCTCCATTTTGATTCTTAAAGCGTCC
ATCTTCGCTGCTTTTTTCACTACAAACTGTGAAATCcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057343-exon-scaffold_288-1491911889:752036..752216 | TCONS_00057343-exon-scaffold_288-1491911889:752036..752216 | Clytia hemisphaerica | exon |
| TCONS_00057343-exon-scaffold_288-1510915933:752036..752216 | TCONS_00057343-exon-scaffold_288-1510915933:752036..752216 | Clytia hemisphaerica | exon |
| TCONS_00057343-exon-scaffold_288-1575043694:752036..752216 | TCONS_00057343-exon-scaffold_288-1575043694:752036..752216 | Clytia hemisphaerica | exon |
| TCONS_00057343-exon-scaffold_288-1491911889:753935..755674 | TCONS_00057343-exon-scaffold_288-1491911889:753935..755674 | Clytia hemisphaerica | exon |
| TCONS_00057343-exon-scaffold_288-1510915933:753935..755674 | TCONS_00057343-exon-scaffold_288-1510915933:753935..755674 | Clytia hemisphaerica | exon |
| TCONS_00057343-exon-scaffold_288-1575043694:753935..755674 | TCONS_00057343-exon-scaffold_288-1575043694:753935..755674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:752036..755674 + |
Blast
BLAST of TCONS_00057343 vs. Swiss-Prot (Human)
Match: DCTN6 (Dynactin subunit 6 OS=Homo sapiens GN=DCTN6 PE=1 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 5.377e-59 Identity = 101/173 (58.38%), Postives = 124/173 (71.68%), Query Frame = 1
Query: 73 KITPGALVCNEAEITGNVTIGVRTVVHPKAKIIAESGPIIIGDGNLIEEQAVIINRSQN------------PLTIGHNNVFEIGTHVEAIAIGDNNVFEAKTVVGPHVEVTHGCVVGALCKLTGTERIAENTVIFGQNNDRRRAAERPAPQMLQLDFLTKILPNYHHLKGRGK 555
KI PGA+VC E+EI G+VTIG RTV+HPKA+IIAE+GPI+IG+GNLIEEQA+IIN + P+ IG NNVFE+G + +A+ +GDNNV E+K VG +V +T GC++GA C L E I ENTVI+G + RR ERP PQ LQLDFL KILPNYHHLK K
Sbjct: 10 KIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKKTMK 182
The following BLAST results are available for this feature:
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