TCONS_00057345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057345
Unique NameTCONS_00057345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length902

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057345 ID=TCONS_00057345|Name=TCONS_00057345|organism=Clytia hemisphaerica|type=transcript|length=902bp
CCTCATTATGTCAAGATTTGGTGGATCCTTTGTTTACGTCATCAGCTCTT
CTCAATTATCGGATTCTTCACCTGGCATATATTGGTCTTGCCATCGTCAC
AATAGCTGTCAATGTTTCAGTATTATACACATTTTACAAGCTATCCTACT
ATAATACCATCTACCACAGatCTCTGATTGTGCTTTTGTTGACCGACATA
TTAACCTGCGTGTCGCTACTCCCATCATTCAGCTACTATGCATTTCAGCT
GGCCAATGGAAAAGAAGATTGCTTAACGGCAGACCTCGTTCGCTTGATTG
CATCCTGTACAGTTACCATGGCGATGTCCACTATAATCCTCATCAATATA
AACCAATACGTAGAAGTGCTTCGCCCGTTCATACGTGTTCACTACTATTT
TTGGAGGATCACAATGGCACTGTGTTCTTTTTGGATAACACAAATTATTA
TTTCGATACTTGTTTTTCTAGTCTTACCTAAGAATGTTTATTCAAAGTAT
TTATCATGCTTTACTGTTGTAACTATCATAGTCTTTGTGGCGTTGTGTTT
TATGCAGTATCATATTAACCGTGAAACTAGAAGAATTGTAAGCCGAACTG
CTGCCCAAACTGGTGATATAGAGAGTGCAAGAATCATTACGCGTATAAGT
CGGATGTCACAATCTATACTGTTTGCATTCGGTATTTGTTATTCTCCAGT
CGGTGTTGTCCTGTTATTGACATTAATATATGAATCGGAAAGAGCCTTCA
TTGCTACTTATATACGACTGTGGTACCTATTCATTGGGAATATGAATCCA
TTACTTGATCCAATCATCTACTGTATCAGAATGAGATCGGTACCTCGCTA
TATCTTTCGATTTTTTCGCCGTTGCAGAGCTAACCGTGTGGGCGTGGTTG
AC
Run BLAST on NCBI

protein sequence of TCONS_00057345-protein

>TCONS_00057345-protein ID=TCONS_00057345-protein|Name=TCONS_00057345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
SLCQDLVDPLFTSSALLNYRILHLAYIGLAIVTIAVNVSVLYTFYKLSYY
NTIYHRSLIVLLLTDILTCVSLLPSFSYYAFQLANGKEDCLTADLVRLIA
SCTVTMAMSTIILININQYVEVLRPFIRVHYYFWRITMALCSFWITQIII
SILVFLVLPKNVYSKYLSCFTVVTIIVFVALCFMQYHINRETRRIVSRTA
AQTGDIESARIITRISRMSQSILFAFGICYSPVGVVLLLTLIYESERAFI
ATYIRLWYLFIGNMNPLLDPIIYCIRMRSVPRYIFRFFRRCRANRVGVVD
Run BLAST on NCBI

transcript from alignment at scaffold_288:97014..99338-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057345 ID=TCONS_00057345|Name=TCONS_00057345|organism=Clytia hemisphaerica|type=transcript|length=2325bp|location=Sequence derived from alignment at scaffold_288:97014..99338- (Clytia hemisphaerica)
CCTCATTATGTCAAGATTTGGTGGATCCTTTGTTTACGTCATCAGCTCTT
CTCAATTATCGGATTCTTCACCTGGCATATATTGGTCTTGCCATCGTCAC
AATAGCTGTCAATGTTTCAGTATTATACACATTTTACAAGCTATCCTACT
ATAATACCATCTACCACAGGTAAATATCTAAGAGAACAGACTTTTGGTGA
ACACTCTTTAAAATAAATTCTCTCCAATAGACCCTTTCATAAATTGCGTC
ACGAACATCACTTGCCTCGTTTTGAAATTATTGCCATGGTGATTAACTCC
CAGTGGATTTTATTAAAATTACTTTCTATTCTTAAAAAAATCATCTCAAG
GGACATAATCACCTTGCTAATTGCTTAAACGANGTAAAGGGACATAATCA
CCTTGGTAATTGCTTAAACGAGGCAAGTGATCTCCGTGACGTAATTTATG
AAAAGGTCTATGGTGTTGTAAAAATCTTTTCAAAATGACACCTAATTTTT
TGTTTAAAACAAATATTTCGGAAGAATATCGTATTACTTCGAATAAACGC
CCCATTCCTTTGAACGCCCCCCTCGAATAAACGCCCCTCCTAAAAGGAAA
ATTATCTGATAAACGCCCGTTCAAATAAATGCCTCCTTTGAATGAACGCC
CCCTCTAGGGGAGGAGCGTTTATAAGAAACTGGTGATTTGAATACTTCAA
TAACAGTGTTGATTGGGCTTGAAAAGGAAGATTTTAGTCATTTCTTGTAA
CCAGAGCTGTTTTCGATGCAATTTTAATCGTTGAACCAAAGAAATTTTGC
ACTAAAATCCTGATAAAGAACTAAAACAGGTATATTTGCTCTAAATATTC
GACTTTAGACTAAAATAATTCAATAAACGCCCCCTTCTTTTAAACGGAAC
ATGTAAGGGTGTAAAAAGTGAAAAAGAGTGAGGAAGATCTGACAATTTTT
ATCTTAAAATTCACCATTAAGGTCGAGTTTTTGCGTGAATTTCCTCATAA
TGGTTAAACTTGCTCTGCAAGGGTCAAACTTTNGTTAAGGTCGAGTTTTT
GCGTGAATTTCCTCATAATGGTCAAACTTGCTCTGCAAGGGTCAAACTTT
GAGACCCGACTTTTTGTTTCTGCATAGTTTTGAGATCGAGCTAGAAAAAT
TAGCTCCTTTTGATGTATTCAACAGACAAACTTATTTTCCGCCCTTAGCT
CTATACTAGGTATATAAATGCATGGGGTAGGTTTGCGATTCAAGGGGTAC
ACTCCACCCGACAAACAGCCTTTTGACCCTTACAACGAAAAGCGCCAAAA
CCTTTTGAGCAAATTTGTCCCTTAAGATTAACAGGTGAGTCCTGAAATTT
ATTTCCAAACTTTTCTAACACTTTACAGACGGAACCAGGGACTCAAAGCC
CAAAAAGACCTGTCCCCCTAAATAGTGCTTTCAGTATATCAGTAAAAGCG
ACGGTCTTTAACGAACATATCAATATCGCGAAAATATGTCTGTACTGACG
ATGGCGTAGCCGAAAAGCTTTTACCGAAACAAAATTTTGAGATTTTTTAG
CAAGAGTTTATTTAACAAAATCAAAATATTTTTATCTTTTAGATCTCTGA
TTGTGCTTTTGTTGACCGACATATTAACCTGCGTGTCGCTACTCCCATCA
TTCAGCTACTATGCATTTCAGCTGGCCAATGGAAAAGAAGATTGCTTAAC
GGCAGACCTCGTTCGCTTGATTGCATCCTGTACAGTTACCATGGCGATGT
CCACTATAATCCTCATCAATATAAACCAATACGTAGAAGTGCTTCGCCCG
TTCATACGTGTTCACTACTATTTTTGGAGGATCACAATGGCACTGTGTTC
TTTTTGGATAACACAAATTATTATTTCGATACTTGTTTTTCTAGTCTTAC
CTAAGAATGTTTATTCAAAGTATTTATCATGCTTTACTGTTGTAACTATC
ATAGTCTTTGTGGCGTTGTGTTTTATGCAGTATCATATTAACCGTGAAAC
TAGAAGAATTGTAAGCCGAACTGCTGCCCAAACTGGTGATATAGAGAGTG
CAAGAATCATTACGCGTATAAGTCGGATGTCACAATCTATACTGTTTGCA
TTCGGTATTTGTTATTCTCCAGTCGGTGTTGTCCTGTTATTGACATTAAT
ATATGAATCGGAAAGAGCCTTCATTGCTACTTATATACGACTGTGGTACC
TATTCATTGGGAATATGAATCCATTACTTGATCCAATCATCTACTGTATC
AGAATGAGATCGGTACCTCGCTATATCTTTCGATTTTTTCGCCGTTGCAG
AGCTAACCGTGTGGGCGTGGTTGAC

Coding sequence (CDS) from alignment at scaffold_288:97014..99338-

>TCONS_00057345 ID=TCONS_00057345|Name=TCONS_00057345|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_288:97014..99338- (Clytia hemisphaerica)
ATCTCTGATTGTGCTTTTGTTGACCGACATATTAACCTGCGTGTCGCTAC
TCCCATCATTCAGCTACTATGCATTTCAGCTGGCCAATGGAAAAGAAGAT
TGCTTAACGGCAGACCTCGTTCGCTTGATTGCATCCTGTACAGTTACCAT
GGCGATGTCCACTATAATCCTCATCAATATAAACCAATACGTAGAAGTGC
TTCGCCCGTTCATACGTGTTCACTACTATTTTTGGAGGATCACAATGGCA
CTGTGTTCTTTTTGGATAACACAAATTATTATTTCGATACTTGTTTTTCT
AGTCTTACCTAAGAATGTTTATTCAAAGTATTTATCATGCTTTACTGTTG
TAACTATCATAGTCTTTGTGGCGTTGTGTTTTATGCAGTATCATATTAAC
CGTGAAACTAGAAGAATTGTAAGCCGAACTGCTGCCCAAACTGGTGATAT
AGAGAGTGCAAGAATCATTACGCGTATAAGTCGGATGTCACAATCTATAC
TGTTTGCATTCGGTATTTGTTATTCTCCAGTCGGTGTTGTCCTGTTATTG
ACATTAATATATGAATCGGAAAGAGCCTTCATTGCTACTTATATACGACT
GTGGTACCTATTCATTGGGAATATGAATCCATTACTTGATCCAATCATCT
ACTGTATCAGAATGAGATCGGTACCTCGCTATATCTTTCGATTTTTTCGC
CGTTGCAGAGCTAACCGTGTGGGCGTGGTTGACTCATTATGTCAAGATTT
GGTGGATCCTTTGTTTACGTCATCAGCTCTTCTCAATTATCGGATTCTTC
ACCTGGCATATATTGGTCTTGCCATCGTCACAATAGCTGTCAATGTTTCA
GTATTATACACATTTTACAAGCTATCCTACTATAATACCATCTACCACAG
ATCTCTGATTGTGCTTTTGTTGACCGACATATTAACCTGCGTGTCGCTAC
TCCCATCATTCAGCTACTATGCATTTCAGCTGGCCAATGGAAAAGAAGAT
TGCTTAACGGCAGACCTCGTTCGCTTGATTGCATCCTGTACAGTTACCAT
GGCGATGTCCACTATAATCCTCATCAATATAAACCAATACGTAGAAGTGC
TTCGCCCGTTCATACGTGTTCACTACTATTTTTGGAGGATCACAATGGCA
CTGTGTTCTTTTTGGATAACACAAATTATTATTTCGATACTTGTTTTTCT
AGTCTTACCTAAGAATGTTTATTCAAAGTATTTATCATGCTTTACTGTTG
TAACTATCATAGTCTTTGTGGCGTTGTGTTTTATGCAGTATCATATTAAC
CGTGAAACTAGAAGAATTGTAAGCCGAACTGCTGCCCAAACTGGTGATAT
AGAGAGTGCAAGAATCATTACGCGTATAAGTCGGATGTCACAATCTATAC
TGTTTGCATTCGGTATTTGTTATTCTCCAGTCGGTGTTGTCCTGTTATTG
ACATTAATATATGAATCGGAAAGAGCCTTCATTGCTACTTATATACGACT
GTGGTACCTATTCATTGGGAATATGAATCCATTACTTGATCCAATCATCT
ACTGTATCAGAATGAGATCGGTACCTCGCTATATCTTTCGATTTTTTCGC
CGTTGCAGAGCTAACCGTGTGGGCGTGGTTGACTCATTATGTCAAGATTT
GGTGGATCCTTTGTTTACGTCATCAGCTCTTCTCAATTATCGGATTCTTC
ACCTGGCATATATTGGTCTTGCCATCGTCACAATAGCTGTCAATGTTTCA
GTATTATACACATTTTACAAGCTATCCTACTATAATACCATCTACCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036137XLOC_036137Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057345-proteinTCONS_00057345-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057345-exon-scaffold_288-1575043694:99170..99338TCONS_00057345-exon-scaffold_288-1575043694:99170..99338Clytia hemisphaericaexon
TCONS_00057345-exon-scaffold_288-1575043694:97014..97746TCONS_00057345-exon-scaffold_288-1575043694:97014..97746Clytia hemisphaericaexon
TCONS_00057345-exon-scaffold_288-1510915933:99170..99338TCONS_00057345-exon-scaffold_288-1510915933:99170..99338Clytia hemisphaericaexon
TCONS_00057345-exon-scaffold_288-1510915933:97014..97746TCONS_00057345-exon-scaffold_288-1510915933:97014..97746Clytia hemisphaericaexon
TCONS_00057345-exon-scaffold_288-1491911889:99170..99338TCONS_00057345-exon-scaffold_288-1491911889:99170..99338Clytia hemisphaericaexon
TCONS_00057345-exon-scaffold_288-1491911889:97014..97746TCONS_00057345-exon-scaffold_288-1491911889:97014..97746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:97014..99338 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.153583	0.0998453	0.11593	0.0567097	0	0	0.0658185	0.123237	0.0431406	0.106873	0.0518668	0.102286	0	0.035359	0	0	0	0.078782	0	0.170842	0.296986	0.289719	0.821779	1.60096	0.769513	0.882992	3.86088	5.46893	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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