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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057349 ID=TCONS_00057349|Name=TCONS_00057349|organism=Clytia hemisphaerica|type=transcript|length=1255bp
TATCTAATCACTAATAACTTTGAATGAAAAGATATGCAAGCTGCAATAAA
ATGATAGGTCAATGGTAAGAATCATTGCAAAAAAATGCAAGACAAGATGT
TGCGAGTTGCTGTTATTGAAGGAGGCTATAGCAAAGAAAAAGATATCTCA
GTGAAAAGCGCTCAAGGTGTTTTTGAGAACTTGGACTTATCAAAGTATCT
TCCTACTCGTGTATACATCGACGACGTTGAATGGACGGCGTACGACGCCG
ACGGACGGTACCCGATTAATAAAAATGACTTCAGCTTCATACACAAGGAT
AACATAAAGATCACTTTTGACGTTGCTTTTATTCTAGTTCATGGGACTCC
AGGTGAGGATGGAAAGCTGCAAGGTTATTTCGATATGATAGGTATTCCTT
ACACGACTTCATCTGCTGTTGTTACCACGTTAGCTTTTCACAAGTTTTAC
GTTAAGCAATTCATCCGTAGCTTGAATCTAGCAAACGTGGCAGAAGCGGT
GTTAGTGAAACGTGGTGAAACAGTGAATGATGATGAAGTACTGATGAAGA
TTGGGTTACCGTGTTTTGTTAAACCAACAGATGGTGGCAGCAGCTATGGC
GTGACCAAGGTGAAAGAGAAGACACAATTACAAGAGGCCATTTCCCTGGC
ATTTAAACATGGTAGTCAGGTGATGATCGAATCATTTGTCGGTGGACGGG
AAATCACTAACGGGGTGTACCGAAAGGCCGACAAACAAATCAAAGTCCTC
CCGATCACTGAGATCATTACCGACAACGAATTTTTCGATTACGAGGCTAA
ATATGAAGGAAAAGTTGATGAGGTGACACCTGCTGATCTTGATGACAAAA
tgactatgaaaatcaaaactcTCACACAACGAATTTACGATGCTTTGGGG
ATGAGAGGTGTCGTTCGTATTGATTACATCATCAATGATGTAAACAATGA
ACCCCATCTTATTGAAATTAATAACGTCCCTGGCCAATCAGCGCCGTCCA
GTATTATCCCACAAATGGCACGATGTGAACAAATATCGTTACACGAGCTG
TATGGAGATTTGATACAAGCCAGTTTAAATCCttgaagaaaacaacaaaa
ttatatATTTATAACATATCAAATAGGAAAATACTTTTAATAAATTCCCT
CTGCAGTCTAAAGTTTACATATCTATTAGTTCTTTAAGTGACCAatagtt
tttgttttgcttgatttattgaattatttcaatttttacaaattttacaa
attag Run BLAST on NCBI protein sequence of TCONS_00057349-protein >TCONS_00057349-protein ID=TCONS_00057349-protein|Name=TCONS_00057349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MQDKMLRVAVIEGGYSKEKDISVKSAQGVFENLDLSKYLPTRVYIDDVEW
TAYDADGRYPINKNDFSFIHKDNIKITFDVAFILVHGTPGEDGKLQGYFD
MIGIPYTTSSAVVTTLAFHKFYVKQFIRSLNLANVAEAVLVKRGETVNDD
EVLMKIGLPCFVKPTDGGSSYGVTKVKEKTQLQEAISLAFKHGSQVMIES
FVGGREITNGVYRKADKQIKVLPITEIITDNEFFDYEAKYEGKVDEVTPA
DLDDKMTMKIKTLTQRIYDALGMRGVVRIDYIINDVNNEPHLIEINNVPG
QSAPSSIIPQMARCEQISLHELYGDLIQASLNP Run BLAST on NCBI transcript from alignment at scaffold_288:191912..194331- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057349 ID=TCONS_00057349|Name=TCONS_00057349|organism=Clytia hemisphaerica|type=transcript|length=2420bp|location=Sequence derived from alignment at scaffold_288:191912..194331- (Clytia hemisphaerica)
TATCTAATCACTAATAACTTTGAATGAAAAGATATGCAAGCTGCAATAAA
ATGATAGGTCAATGGTAAGAATCATTGCAAAAAAATGCAAGACAAGATGT
TGCGAGTTGCTGTTATTGAAGGAGGCTATAGCAAAGAAAAAGATATCTCA
GTGAAAAGCGCTCAAGGTGTTTTTGAGAACTTGGACTTATCAAAGTATCT
TCCTACTCGTGTATACATCGACGACGTTGAATGGACGGCGTACGACGCCG
ACGGACGGTACCCGATTAATAAAAATGACTTCAGCTTCATACACAAGGAT
AACATAAAGATCACTTTTGACGTTGCTTTTATTCTAGTTCATGGGACTCC
AGGTGAGGATGGAAAGCTGCAAGGTTATTTCGATATGATAGGTATTCCTT
ACACGACTTCATCTGCTGTTGTTACCACGTTAGCTTTTCACAAGTTTTAC
GTTAAGCAATTCATCCGTAGCTTGAATCTAGCAAACGTGGCAGAAGCGGT
GTTAGTGAAACGTGGTGAAACAGTGAATGATGATGAAGTACTGATGAAGA
TTGGGTTACCGTGTTTTGTTAAACCAACAGATGGTGGCAGCAGCTATGGC
GTGACCAAGGTGAAAGAGAAGACACAATTACAAGAGGCCATTTCCCTGGC
ATTTAAACATGGTAGTCAGGTATACTTTTCTAAGCTTGCTAGATTTTTTT
GTCTTGGAAAGTTATGTGTATTCAATTAAATTACCCTCATGGGAATCATT
CTAATGAAATATAATTTGAGGCAAAAGTAGTGCATTGATATACAGGGTGT
CCCTAATGAAAGTATCGAGTCGAAACACAACGATGAGTAGAAACTTTTAT
GTGTGTATTCATTATTCATTATTTTATTAGGGATAACACACACAAACTTT
TCTACTCAATAGCATGTTCAAACTCGATACTTTAATTAGGGACACCCTGT
ATGAGAGCAGCTATACTTAATGTATTTTGAAGAGTGAAGGGATTTTTGAG
TGACCTTTTTCTCTAAACAAGAAAATTGACCAACAAGTTTTTTTGACAAG
ACAAGCTGTTTTCAAATTAATTATTTAATTTCTTTCAAACTACGATTACC
TAACAATGTAAGCCACAAATTGCTACCGTGAGTATCACAGCTCGAATGGA
TTAATATTTTCTCTTTGAAAACTTGGCCTCTGATACTCAGGNTGTTTTCA
AATTAATTATTTAATTTCTTTCAAACTACGATTACCTAACAATGTAAGCC
ACAAATTGCTACCGTGAGTATCACAGCTCGAATGAATTAATATTTTCTCT
TTGAAAACTTGGCCTCTGATACTCAGGGTAACAAATTGCAGCGCGTTAAC
TTTTAATTCAATAATTCGAGTATACAATAATACACATAATCGCATCTTGA
TTAAAGATACTATTTCACTTCATCCTCGTGCCCAGGCCTAACCCTTTTTC
TTTGTGTGACGAGGAGATTAGCCCTGACTTTTATAGCGAGCCTCGTTTCG
AGGCCAAAACTCGTGACCACGCCCTTAAAAATGGAGATTTCGACAATATG
AAAAAACACCCTAGGGATTCACGCAAGGATCAAGTGTGCCAAGTTTCAGC
CAAATCTGACCATTTTTGAAGTCTCCAGCCTTCCCCAAAGTTGAGAACCT
CTAAAATGTAAGTTTAAACTTTAGAATCCAGCGTTAACTTAATAACTTTG
AAACTTCACTGAGCATTTCTTTTTTTTTTAAATCAACAAATTCATATTGA
AGAGTCCCACTTCTCAGTGATTTGACTTCTACTGGCTACAAAATTGCAAA
ATCATTAATGCAGGTTTGTCATGTTATTTTGCAGGTGATGATCGAATCAT
TTGTCGGTGGACGGGAAATCACTAACGGGGTGTACCGAAAGGCCGACAAA
CAAATCAAAGTCCTCCCGATCACTGAGATCATTACCGACAACGAATTTTT
CGATTACGAGGCTAAATATGAAGGAAAAGTTGATGAGGTGACACCTGCTG
ATCTTGATGACAAAATGACTATGAAAATCAAAACTCTCACACAACGAATT
TACGATGCTTTGGGGATGAGAGGTGTCGTTCGTATTGATTACATCATCAA
TGATGTAAACAATGAACCCCATCTTATTGAAATTAATAACGTCCCTGGCC
AATCAGCGCCGTCCAGTATTATCCCACAAATGGCACGATGTGAACAAATA
TCGTTACACGAGCTGTATGGAGATTTGATACAAGCCAGTTTAAATCCTTG
AAGAAAACAACAAAATTATATATTTATAACATATCAAATAGGAAAATACT
TTTAATAAATTCCCTCTGCAGTCTAAAGTTTACATATCTATTAGTTCTTT
AAGTGACCAATAGTTTTTGTTTTGCTTGATTTATTGAATTATTTCAATTT
TTACAAATTTTACAAATTAG Coding sequence (CDS) from alignment at scaffold_288:191912..194331- >TCONS_00057349 ID=TCONS_00057349|Name=TCONS_00057349|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_288:191912..194331- (Clytia hemisphaerica)
GTGATGATCGAATCATTTGTCGGTGGACGGGAAATCACTAACGGGGTGTA
CCGAAAGGCCGACAAACAAATCAAAGTCCTCCCGATCACTGAGATCATTA
CCGACAACGAATTTTTCGATTACGAGGCTAAATATGAAGGAAAAGTTGAT
GAGGTGACACCTGCTGATCTTGATGACAAAATGACTATGAAAATCAAAAC
TCTCACACAACGAATTTACGATGCTTTGGGGATGAGAGGTGTCGTTCGTA
TTGATTACATCATCAATGATGTAAACAATGAACCCCATCTTATTGAAATT
AATAACGTCCCTGGCCAATCAGCGCCGTCCAGTATTATCCCACAAATGGC
ACGATGTGAACAAATATCGTTACACGAGCTGTATGGAGATTTGATACAAG
CCAGTTTAAATCCTTGAATGCAAGACAAGATGTTGCGAGTTGCTGTTATT
GAAGGAGGCTATAGCAAAGAAAAAGATATCTCAGTGAAAAGCGCTCAAGG
TGTTTTTGAGAACTTGGACTTATCAAAGTATCTTCCTACTCGTGTATACA
TCGACGACGTTGAATGGACGGCGTACGACGCCGACGGACGGTACCCGATT
AATAAAAATGACTTCAGCTTCATACACAAGGATAACATAAAGATCACTTT
TGACGTTGCTTTTATTCTAGTTCATGGGACTCCAGGTGAGGATGGAAAGC
TGCAAGGTTATTTCGATATGATAGGTATTCCTTACACGACTTCATCTGCT
GTTGTTACCACGTTAGCTTTTCACAAGTTTTACGTTAAGCAATTCATCCG
TAGCTTGAATCTAGCAAACGTGGCAGAAGCGGTGTTAGTGAAACGTGGTG
AAACAGTGAATGATGATGAAGTACTGATGAAGATTGGGTTACCGTGTTTT
GTTAAACCAACAGATGGTGGCAGCAGCTATGGCGTGACCAAGGTGAAAGA
GAAGACACAATTACAAGAGGCCATTTCCCTGGCATTTAAACATGGTAGTC
AGGTGATGATCGAATCATTTGTCGGTGGACGGGAAATCACTAACGGGGTG
TACCGAAAGGCCGACAAACAAATCAAAGTCCTCCCGATCACTGAGATCAT
TACCGACAACGAATTTTTCGATTACGAGGCTAAATATGAAGGAAAAGTTG
ATGAGGTGACACCTGCTGATCTTGATGACAAAATGACTATGAAAATCAAA
ACTCTCACACAACGAATTTACGATGCTTTGGGGATGAGAGGTGTCGTTCG
TATTGATTACATCATCAATGATGTAAACAATGAACCCCATCTTATTGAAA
TTAATAACGTCCCTGGCCAATCAGCGCCGTCCAGTATTATCCCACAAATG
GCACGATGTGAACAAATATCGTTACACGAGCTGTATGGAGATTTGATACA
AGCCAGTTTAAATCCTTGAATGCAAGACAAGATGTTGCGAGTTGCTGTTA
TTGAAGGAGGCTATAGCAAAGAAAAAGATATCTCAGTGAAAAGCGCTCAA
GGTGTTTTTGAGAACTTGGACTTATCAAAGTATCTTCCTACTCGTGTATA
CATCGACGACGTTGAATGGACGGCGTACGACGCCGACGGACGGTACCCGA
TTAATAAAAATGACTTCAGCTTCATACACAAGGATAACATAAAGATCACT
TTTGACGTTGCTTTTATTCTAGTTCATGGGACTCCAGGTGAGGATGGAAA
GCTGCAAGGTTATTTCGATATGATAGGTATTCCTTACACGACTTCATCTG
CTGTTGTTACCACGTTAGCTTTTCACAAGTTTTACGTTAAGCAATTCATC
CGTAGCTTGAATCTAGCAAACGTGGCAGAAGCGGTGTTAGTGAAACGTGG
TGAAACAGTGAATGATGATGAAGTACTGATGAAGATTGGGTTACCGTGTT
TTGTTAAACCAACAGATGGTGGCAGCAGCTATGGCGTGACCAAGGTGAAA
GAGAAGACACAATTACAAGAGGCCATTTCCCTGGCATTTAAACATGGTAG
TCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057349-exon-scaffold_288-1575043694:193663..194331 | TCONS_00057349-exon-scaffold_288-1575043694:193663..194331 | Clytia hemisphaerica | exon |
| TCONS_00057349-exon-scaffold_288-1575043694:191912..192497 | TCONS_00057349-exon-scaffold_288-1575043694:191912..192497 | Clytia hemisphaerica | exon |
| TCONS_00057349-exon-scaffold_288-1510915933:193663..194331 | TCONS_00057349-exon-scaffold_288-1510915933:193663..194331 | Clytia hemisphaerica | exon |
| TCONS_00057349-exon-scaffold_288-1510915933:191912..192497 | TCONS_00057349-exon-scaffold_288-1510915933:191912..192497 | Clytia hemisphaerica | exon |
| TCONS_00057349-exon-scaffold_288-1491911889:193663..194331 | TCONS_00057349-exon-scaffold_288-1491911889:193663..194331 | Clytia hemisphaerica | exon |
| TCONS_00057349-exon-scaffold_288-1491911889:191912..192497 | TCONS_00057349-exon-scaffold_288-1491911889:191912..192497 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:191912..194331 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008716 | D-alanine-D-alanine ligase activity |
| GO:0003824 | catalytic activity |
| GO:0005524 | ATP binding |
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005737 |
cytoplasm |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0008716 |
D-alanine-D-alanine ligase activity |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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