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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057376 ID=TCONS_00057376|Name=TCONS_00057376|organism=Clytia hemisphaerica|type=transcript|length=1114bp atttttcttcatgttcattcattcttaaattttctaGACAActaacaaag aaaataaaaagtagaATCAAAGACATGCAGATAAAATGGAGAATGCAACA TCTTTAAACAATTCTGCTGCTACTGGTGGTGCTGGTGGTCTTGGTGGGTT GAACAACACTTCTGCGACAGTGTCTTTACAACACCCTACACAACAAAACA TGGTCATGCAACCTATGCAACAACTGCAGATGGGGCAAGCACCTCAGCAG CAGCCTTCGACAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGCA AATGCCGGATGATGAAAACNCAAGCAACCCTGTAATGAACGGCCAACCAC CACCGCCGCAAATGCTGGATGATGAAAACACTGAGATGAGGAAACAAGAA ATTGGTGATATTTTACACCAAATCATGAATATCACGGACCAATCACTGGA CGAAGCTCAAGCCAGGAAACAAGCTTTGAATTGCCACCGCTTGAAGCCTG CATTGTTCACAGTGTTGTGTGAAATTAAAGAAAAGACAGTTTTAAACATG CGCAGCCAAGTGGAAGATGAGCCACCAGATCCACAATTAATGCGATTGGA TAACATGTTACTTGCCGAAGGCGTCGCAGGAAGTGATAAGAGCGGAAGTA CGGCCGCTGCGGCTGCAGCTGTTCACGATTCGCAAATCGAGAATGTGGAT TACAAAATGAAGCTCTCGCaaatccgacaaatttaccACACCGAGCTCGA GAAATATGAACAGGCTTGTTCCGAATTCACTACTCACGTGATGAACTTGT TACGTGAGCAGTCACGTACGCGACCCGTCTCCAAGAACGAGATCGAACGT ATGGTGAACGTCATCCATTGGAAGTTCAACTCCATTCAAATGCAACTGAA GCAAAGCACCTGTGAGGCTGTCATGATTTTGAGATCTAGGTTCCTTGATG CAAGACGGAAAAGACGTAACTTCAGCAAGCAGTCGACAGAGATTTTGAAC GAATATTTTTATTCGCATTTGAGCAACCCTTATCCGAGTGAAGAAGCCAA AGAGGAGTTGGCTCGAAAGTGTGGTATCAGTGTTTCACAAGTTTCGAATT GGTTTGGAAACAAG Run BLAST on NCBI transcript from alignment at scaffold_288:483245..489671- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057376 ID=TCONS_00057376|Name=TCONS_00057376|organism=Clytia hemisphaerica|type=transcript|length=6427bp|location=Sequence derived from alignment at scaffold_288:483245..489671- (Clytia hemisphaerica) ATTTTTCTTCATGTTCATTCATTCTTAAATTTTCTAGACAACTAACAAAG
AAAATAAAAAGTAGAATCAAAGACATGCAGATAAAATGGAGAATGCAACA
TCTTTAAACAATTCTGCTGCTACTGGTGGTGCTGGTGGTCTTGGTGGGTT
GAACAACACTTCTGCGACAGTGTCTTTACAACACCCTACACAACAAAACA
TGGTCATGCAACCTATGCAACAACTGGTACGACATATTTTTCTTCCTCTT
TGCTCGTTTGACAGACCATTTCATAAATTATTTTAACTGCAACGACTGAC
TCTTTTTGAAACCATCGATCACCAAGGTAATTAAATCGTTTGAGCCTTCA
AGTGCTACTTTTCTCAACTTCAGTTGAGCTACAATCTGACAATGTCTGTC
TGTCACAAAAACTTTAGGGCAGCTTGGATTTGGCTGAAATCTGGCACACT
TGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTTGAAAATTT
TGATTTTTGGGGCCTGGGGACGAGTTTTTCTCCAAAACGAGGCTAAAACT
TTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTGAAATTTTG
CACACTTGTTCCTTGGGTGATTATCTGAGGACGTATTTCTTTTATTTTTC
AAAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCTCCAAAACGAAA
CTAAAGCTTTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTG
AAATTTTCAAACCATCCGTTTAATGATATTCTATTTTCAATGATAAAGAA
AGGAGGCGCGTCTGCTGACTAAGTAAAAAAAGCAATAAGAATTCCTCCAT
AGGTGTGCTAGCGCACTGCGGAAGAGAGAAAGAGTTGTTTTTTCTTTCGT
TCAAAAATGCAATGTCAGCAAATGGTAGGAGATATGTTAAATAATGTCAT
TTTATGGCTCCATTAAAAATCACAATATTCACTAAGGAAACTTTTGAATT
GCTTGTTCTTTCATTAGCAGATGGGGCAAGCACCTCAGCAGCAGCCTTCG
ACAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGCAAATGCCGGA
TGATGAAAACNCAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGC
AAATGCTGGATGATGAAAACACTGAGATGAGGAAACAAGAAATTGGTGAT
ATTTTACACCAAATCATGAATATCACGGACCAATCACTGGACGAAGCTCA
AGCCAGGTAAGAGGGGGACATTGAATTTATACATTAAGGGTTCTTGTTGT
TACTTTTTAGTTGGATTTTGCAAGGGTTGTAAATTTTTTTGGAATTATAT
TCAAGCTTTGATATACCTACCGAAATAGAACTGGTTCCAGTATCATTCTC
GCTTAGAAATGAATTTCAGATGCCTCTCTTTAATTCGATCTTCAAGGCAC
TAAGAAATTTCTTTGAATAAGATAAAATTTAAATTATATGTAGAGTATTT
TGACCTACTTCCCAGCTGAGGGGACCAATGTTTTAGTTCGAATTATAGAA
GTTCGAATTAGAAAGAGTTGACTGTAACCATTTAAACAAAATTAAAGAAA
TGCTATCGAAATCCAATTTGGCTGTAAAAGACCAAAGACGACCTTTATTA
CCAGTACTATTTTTTGTATTTTTGGTTTTGCAGGAAACAAGCTTTGAATT
GCCACCGCTTGAAGCCTGCATTGTTCACAGTGTTGTGTGAAATTAAAGAA
AAGACAGGTAAGATGTTAGCCTGGGCTCATTTATAATCCATGTAATACAC
CTTTTCGACCGTAGTCGTGTGGTCTGGCGCGTGCCACTTGATTATTTAAT
TATCCCACTAAACTCGATCCAATGCTTTTTAGGATAAAGCGGACAAAAAA
ATGCCCGCGCGGCAATTGCCGGCTACGGTCGAAAAGGTGTATACAGTAGC
ATGGGTATTATATGATAACACGATGATTGTTTGTGTAAACTACAATTTGT
CTATTCCATTATTTTATGCTTATTTTCTACCATGTCTGAATTAGTCTGAA
TTAGCATACTTGACTAGCAAGAGGCTATTATAGTTTTTTTCCTCATGAGG
GAATGGTTCGGTTTCCGTTAAAGGACTTTGTTCAAAAGATCATATTATTG
TGCTCAGAAAAAATTATTTATAGAAGGGCAAGGTTTTCTCATGTTACTGG
TTTAAAGTGCCAATTCGAAAAATGATCAACAACTCTTGATATGATATTTG
TGTAGAAAGGTGCGAGCCGAATTTCGCATATTTTGTCTTAAATCACCAAA
TCTTCCAAGTCTACCAATCACTAAATTAAGCCCACGCCTAAGTCAATCTA
TTTTTTAGGGTAGCCTTTACAATCTTTGTCCGTTTCTCATTTAGTTTTAA
ACATGCGCAGCCAAGTGGAAGATGAGCCACCAGATCCACAATTAATGCGA
TTGGATAACATGTTACTTGCCGAAGGCGTCGCAGGAAGTGATAAGAGCGG
AAGTACGGCCGCTGCGGCTGCAGCTGTTCACGATTCGCAAATCGAGAATG
TGGATTACAAAATGAAGCTCTCGCAAATCCGACAAATTTACCACACCGAG
CTCGAGAAATATGAACAGGTACTTATAGGTTGAAGTCACTGATCTTTATT
GGACCTACCTCCGGGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTC
CGTTCGTCTGTTCTTTCGTCTGTTCGTCTGTCCGTCCGTCTGTTACCAGC
TTTTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTGGGCCTGAATGGTTTAAGTGATTTTCG
TATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCAACACACAAGCT
TTATTTTTCCATTCTGAATTTTGGTACAATTATTGTCATTTTTTTCTTAT
TTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTT
AACCCTGAACTAAGCTTTTTCCAACATCTATGATCTGAGTTCTTAGAAAT
GGTGCCTACTAGTTGCAATACTCAATTTGGGTCAGTTTAGATTTAAAGAA
ATTTTCCGTTTTGTTTTCACTCGCACTTTCGAAAAACTCCAGTAAAAGAT
TTTGTTTGCTGGGATCGAGAAACTGTGTCAAGAGTATATAGAAGTCAGTG
GTTGAGGTCGATTCTCATCCATAAACATCAACTATGTGGATACAGGCAGC
GTTTTTCTTTTTGAAAAATTCAGGAACTCTGTCTAGTCGTCCATATTCGC
ACTCACGTTTAATGATTTCCGACTATGTAAATAATGTGTCTAAGCTTGTC
TATCAACGACCCCCGTTTCCTTTTGATATTGGTCATTCGTGCAAAAGAAG
TAATACATGTACTTATTTATTTGAGCATAATTCAAAACGTTCCGAAACAA
TGTTCCTTTGAGATACCTTAATCATTCTTATATTGCTCGGGAAATTCTTT
CTTACAATCCAGTCATAAATATGAAGCCTGATAAAAGAACTGCCTTGTCA
AGAATTCGGTATACAGCCCGTGGAACTCATGAAACTTTTATAATATTATC
ACTTAGGCTTGTTCCGAATTCACTACTCNTGGAACTCATAAAACTCTTAT
AATATTATCACTTAGGCTTGTTCCGAATTCACTACTCACGTGATGAACTT
GTTACGTGAGCAGTCACGTACGCGACCCGTCTCCAAGAACGAGATCGAAC
GTATGGTGAACGTCATCCATTGGAAGTTCAACTCCATTCAAATGCAACTG
AAGCAAAGCACCTGTGAGGCTGTCATGATTTTGAGATCTAGGTTCCTTGA
TGCAAGGTGAGAATGATTTTATACCGAAATCCCACGGTCATTACCAGAGC
ACGGTGGTCCTGATTACCCATAATTCTTTTCGACCCTTGAAATGGCCTAT
AATATGCATCTTTATAAAATTATATTCATGACAATTATAGCAAAAAGTAT
CTATTCGCAGACACGTATTCCGTCCTTCCCAGGACTCATCAGTGCGGCTC
GGGTAAGCGAGCATAGACTGCTGTTGTCACCAGAGTGCTCAATACACTAA
GTGTTGAGCTTCGCATAATCGCTTGTGGTGAACGGAGAAGCAGATCTTGC
TCCTCAACAGAGTCTATAGAGTGCTCAAATAACCGAAATTCTGAGCGTAA
TACATAACAAAAAGTATCAATACATAGGTAATAGTTATCGGACAGTTGCG
AGTACAATATGAGAAATATTTTACGAGTTCCGAGATCTTTCCGTAGGCGA
GGAAAATATACGGAAAATCCGGAACGAGTGAAATATTTCCATATTGTACG
AGCAAACGTCTGATAACTAGTTTATCGGTGACCCAAAAAATGCACTTTTT
GTGTTGGAGGACACTTTTGTAGCAAAGTGACGTTAGATTGCTTCTACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCAACATCTTTTCGTCAATTTATATTTTTACATGTAAAATAC
AAGACATATTGTACTCTTTTTAACCAATCAGATTGCAGATATTTTTTGGA
TCGCCGATAGCAAAAAGTATAAATTAGATCTGTTAAAATATTAAATGTTT
GTTCTCTCTACCAGACGGAAAAGACGTAACTTCAGCAAGCAGTCGACAGA
GATTTTGAACGAATATTTTTATTCGCATTTGAGCAACCCTTATCCGAGTG
AAGAAGCCAAAGAGGAGTTGGCTCGAAAGTGTGGTATCAGTGTTTCACAA
GTAAGGAGCTACACGTTAAAAGTTTTATTTTTACACAGTTCCCTGTTTCA
TATCAGACACATTTTTAGGTCTGCCTTTTGTTATACGGTATTATGCTGAT
ATAAGCATAAAAATATTTTTCTTTTCCTCTTTCCGACCAATCTTGCTCCA
CATCCATGTCAATCCAATGTGAAAAAGCTAAGATTACAAACGATATCACT
CTTAGTCTTATTTAAAAACAAAACCTTTTAAAGGCAATGTACTACTATTA
CTATTGGTCATTGGTTGCTGCACAAGCGACGAGGTTTGGTTCAAGTGAAC
GAACCTTAGCCTGGGTCAGCCCATTCCATATGAGGGGAATTAAGTAGTCG
CTCTAAGGTGTGAAGGGAATCAGGTAGTCGGTCTCCGCTGCTAACGAGGT
GCTCATTGAAAGCGACTATAGTTGCGAAAATAGGCCTTGGAGCATCCTGC
AACTCAACCAAATAAAAACAAATGGAAATAGTCATTCTTCCTTTTGTAAG
CAACCGTAAGGCTCAAGCTCTGAAATCAGCCTAAAAAATTCGTCCTGTAA
TGTTCTCAAGGTCAAGATAAAAATATTATTATGGGAGGTCCTACAAAGTT
TTAAACTCCAGCCCTGAGTCTAAAATCTGTGTTGCTTAGATAATGTTTCG
ATACCTGAACCTGTTTCCATACAAATCAAGACCACAGAGTTTTGTAATTA
ACTCTTCTACAAGAGAAAAAAAAAAGTATGCGCCTCTAGTTCCAATTCCC
ATCCCGTCATTAGGTTTCAAATTGGCTTGGGGAACAAGCGAACTTCATAG
ATGATAGTCTAGCTAGCCAGCTGGCCGTGGACCCCGTGGAAATAATCGAA
GCCCTGTATTACTAGGCTATTCACGTAAAATAACGACTCTATCGATCTAG
CCATATTGAACAATTTTCACACTAACTCAAAAAAATTCCCTTCCAATCAT
TAGGTTTCGAATTGGTTTGGAAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057376-exon-scaffold_288-1575043694:489446..489671 | TCONS_00057376-exon-scaffold_288-1575043694:489446..489671 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1575043694:488416..488654 | TCONS_00057376-exon-scaffold_288-1575043694:488416..488654 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1575043694:487915..487988 | TCONS_00057376-exon-scaffold_288-1575043694:487915..487988 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1575043694:487054..487277 | TCONS_00057376-exon-scaffold_288-1575043694:487054..487277 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1575043694:485366..485556 | TCONS_00057376-exon-scaffold_288-1575043694:485366..485556 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1575043694:484222..484357 | TCONS_00057376-exon-scaffold_288-1575043694:484222..484357 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1575043694:483245..483268 | TCONS_00057376-exon-scaffold_288-1575043694:483245..483268 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1510915933:489446..489671 | TCONS_00057376-exon-scaffold_288-1510915933:489446..489671 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1510915933:488416..488654 | TCONS_00057376-exon-scaffold_288-1510915933:488416..488654 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1510915933:487915..487988 | TCONS_00057376-exon-scaffold_288-1510915933:487915..487988 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1510915933:487054..487277 | TCONS_00057376-exon-scaffold_288-1510915933:487054..487277 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1510915933:485366..485556 | TCONS_00057376-exon-scaffold_288-1510915933:485366..485556 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1510915933:484222..484357 | TCONS_00057376-exon-scaffold_288-1510915933:484222..484357 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1510915933:483245..483268 | TCONS_00057376-exon-scaffold_288-1510915933:483245..483268 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1491911889:489446..489671 | TCONS_00057376-exon-scaffold_288-1491911889:489446..489671 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1491911889:488416..488654 | TCONS_00057376-exon-scaffold_288-1491911889:488416..488654 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1491911889:487915..487988 | TCONS_00057376-exon-scaffold_288-1491911889:487915..487988 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1491911889:487054..487277 | TCONS_00057376-exon-scaffold_288-1491911889:487054..487277 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1491911889:485366..485556 | TCONS_00057376-exon-scaffold_288-1491911889:485366..485556 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1491911889:484222..484357 | TCONS_00057376-exon-scaffold_288-1491911889:484222..484357 | Clytia hemisphaerica | exon |
TCONS_00057376-exon-scaffold_288-1491911889:483245..483268 | TCONS_00057376-exon-scaffold_288-1491911889:483245..483268 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_288 | supercontig | scaffold_288:483245..489671 - |
Blast
BLAST of TCONS_00057376 vs. Swiss-Prot (Human)
Match: PBX3 (Pre-B-cell leukemia transcription factor 3 OS=Homo sapiens GN=PBX3 PE=1 SV=1) HSP 1 Score: 416.001 bits (1068), Expect = 1.300e-142 Identity = 205/262 (78.24%), Postives = 230/262 (87.79%), Query Frame = 2
Query: 347 PPPPQMLDDENTEMRKQEIGDILHQIMNITDQSLDEAQARKQALNCHRLKPALFTVLCEIKEKTVLNMRSQVEDEPPDPQLMRLDNMLLAEGVAGSDKSGSTXXXXXXVH------DSQIENVDYKMKLSQIRQIYHTELEKYEQACSEFTTHVMNLLREQSRTRPVSKNEIERMVNVIHWKFNSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQSTEILNEYFYSHLSNPYPSEEAKEELARKCGISVSQVSNWFGNK 1114
PPPP + + + RKQ+IGDILHQIM ITDQSLDEAQA+K ALNCHR+KPALF+VLCEIKEKT L++R E++PPDPQLMRLDNMLLAEGV+G +K G +AAAAAA D+ IE+ DY+ KL+QIRQIYHTELEKYEQAC+EFTTHVMNLLREQSRTRP+S EIERMV +IH KF+SIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQ+TEILNEYFYSHLSNPYPSEEAKEELA+KC I+VSQVSNWFGNK
Sbjct: 28 PPPPHGHEGADGDGRKQDIGDILHQIMTITDQSLDEAQAKKHALNCHRMKPALFSVLCEIKEKTGLSIRGAQEEDPPDPQLMRLDNMLLAEGVSGPEKGGGSAAAAAAAAASGGSSDNSIEHSDYRAKLTQIRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVGIIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNK 289
The following BLAST results are available for this feature:
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