TCONS_00057376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057376
Unique NameTCONS_00057376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1114

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057376 ID=TCONS_00057376|Name=TCONS_00057376|organism=Clytia hemisphaerica|type=transcript|length=1114bp
atttttcttcatgttcattcattcttaaattttctaGACAActaacaaag
aaaataaaaagtagaATCAAAGACATGCAGATAAAATGGAGAATGCAACA
TCTTTAAACAATTCTGCTGCTACTGGTGGTGCTGGTGGTCTTGGTGGGTT
GAACAACACTTCTGCGACAGTGTCTTTACAACACCCTACACAACAAAACA
TGGTCATGCAACCTATGCAACAACTGCAGATGGGGCAAGCACCTCAGCAG
CAGCCTTCGACAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGCA
AATGCCGGATGATGAAAACNCAAGCAACCCTGTAATGAACGGCCAACCAC
CACCGCCGCAAATGCTGGATGATGAAAACACTGAGATGAGGAAACAAGAA
ATTGGTGATATTTTACACCAAATCATGAATATCACGGACCAATCACTGGA
CGAAGCTCAAGCCAGGAAACAAGCTTTGAATTGCCACCGCTTGAAGCCTG
CATTGTTCACAGTGTTGTGTGAAATTAAAGAAAAGACAGTTTTAAACATG
CGCAGCCAAGTGGAAGATGAGCCACCAGATCCACAATTAATGCGATTGGA
TAACATGTTACTTGCCGAAGGCGTCGCAGGAAGTGATAAGAGCGGAAGTA
CGGCCGCTGCGGCTGCAGCTGTTCACGATTCGCAAATCGAGAATGTGGAT
TACAAAATGAAGCTCTCGCaaatccgacaaatttaccACACCGAGCTCGA
GAAATATGAACAGGCTTGTTCCGAATTCACTACTCACGTGATGAACTTGT
TACGTGAGCAGTCACGTACGCGACCCGTCTCCAAGAACGAGATCGAACGT
ATGGTGAACGTCATCCATTGGAAGTTCAACTCCATTCAAATGCAACTGAA
GCAAAGCACCTGTGAGGCTGTCATGATTTTGAGATCTAGGTTCCTTGATG
CAAGACGGAAAAGACGTAACTTCAGCAAGCAGTCGACAGAGATTTTGAAC
GAATATTTTTATTCGCATTTGAGCAACCCTTATCCGAGTGAAGAAGCCAA
AGAGGAGTTGGCTCGAAAGTGTGGTATCAGTGTTTCACAAGTTTCGAATT
GGTTTGGAAACAAG
Run BLAST on NCBI

transcript from alignment at scaffold_288:483245..489671-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057376 ID=TCONS_00057376|Name=TCONS_00057376|organism=Clytia hemisphaerica|type=transcript|length=6427bp|location=Sequence derived from alignment at scaffold_288:483245..489671- (Clytia hemisphaerica)
ATTTTTCTTCATGTTCATTCATTCTTAAATTTTCTAGACAACTAACAAAG AAAATAAAAAGTAGAATCAAAGACATGCAGATAAAATGGAGAATGCAACA TCTTTAAACAATTCTGCTGCTACTGGTGGTGCTGGTGGTCTTGGTGGGTT GAACAACACTTCTGCGACAGTGTCTTTACAACACCCTACACAACAAAACA TGGTCATGCAACCTATGCAACAACTGGTACGACATATTTTTCTTCCTCTT TGCTCGTTTGACAGACCATTTCATAAATTATTTTAACTGCAACGACTGAC TCTTTTTGAAACCATCGATCACCAAGGTAATTAAATCGTTTGAGCCTTCA AGTGCTACTTTTCTCAACTTCAGTTGAGCTACAATCTGACAATGTCTGTC TGTCACAAAAACTTTAGGGCAGCTTGGATTTGGCTGAAATCTGGCACACT TGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTTGAAAATTT TGATTTTTGGGGCCTGGGGACGAGTTTTTCTCCAAAACGAGGCTAAAACT TTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTGAAATTTTG CACACTTGTTCCTTGGGTGATTATCTGAGGACGTATTTCTTTTATTTTTC AAAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCTCCAAAACGAAA CTAAAGCTTTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTG AAATTTTCAAACCATCCGTTTAATGATATTCTATTTTCAATGATAAAGAA AGGAGGCGCGTCTGCTGACTAAGTAAAAAAAGCAATAAGAATTCCTCCAT AGGTGTGCTAGCGCACTGCGGAAGAGAGAAAGAGTTGTTTTTTCTTTCGT TCAAAAATGCAATGTCAGCAAATGGTAGGAGATATGTTAAATAATGTCAT TTTATGGCTCCATTAAAAATCACAATATTCACTAAGGAAACTTTTGAATT GCTTGTTCTTTCATTAGCAGATGGGGCAAGCACCTCAGCAGCAGCCTTCG ACAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGCAAATGCCGGA TGATGAAAACNCAAGCAACCCTGTAATGAACGGCCAACCACCACCGCCGC AAATGCTGGATGATGAAAACACTGAGATGAGGAAACAAGAAATTGGTGAT ATTTTACACCAAATCATGAATATCACGGACCAATCACTGGACGAAGCTCA AGCCAGGTAAGAGGGGGACATTGAATTTATACATTAAGGGTTCTTGTTGT TACTTTTTAGTTGGATTTTGCAAGGGTTGTAAATTTTTTTGGAATTATAT TCAAGCTTTGATATACCTACCGAAATAGAACTGGTTCCAGTATCATTCTC GCTTAGAAATGAATTTCAGATGCCTCTCTTTAATTCGATCTTCAAGGCAC TAAGAAATTTCTTTGAATAAGATAAAATTTAAATTATATGTAGAGTATTT TGACCTACTTCCCAGCTGAGGGGACCAATGTTTTAGTTCGAATTATAGAA GTTCGAATTAGAAAGAGTTGACTGTAACCATTTAAACAAAATTAAAGAAA TGCTATCGAAATCCAATTTGGCTGTAAAAGACCAAAGACGACCTTTATTA CCAGTACTATTTTTTGTATTTTTGGTTTTGCAGGAAACAAGCTTTGAATT GCCACCGCTTGAAGCCTGCATTGTTCACAGTGTTGTGTGAAATTAAAGAA AAGACAGGTAAGATGTTAGCCTGGGCTCATTTATAATCCATGTAATACAC CTTTTCGACCGTAGTCGTGTGGTCTGGCGCGTGCCACTTGATTATTTAAT TATCCCACTAAACTCGATCCAATGCTTTTTAGGATAAAGCGGACAAAAAA ATGCCCGCGCGGCAATTGCCGGCTACGGTCGAAAAGGTGTATACAGTAGC ATGGGTATTATATGATAACACGATGATTGTTTGTGTAAACTACAATTTGT CTATTCCATTATTTTATGCTTATTTTCTACCATGTCTGAATTAGTCTGAA TTAGCATACTTGACTAGCAAGAGGCTATTATAGTTTTTTTCCTCATGAGG GAATGGTTCGGTTTCCGTTAAAGGACTTTGTTCAAAAGATCATATTATTG TGCTCAGAAAAAATTATTTATAGAAGGGCAAGGTTTTCTCATGTTACTGG TTTAAAGTGCCAATTCGAAAAATGATCAACAACTCTTGATATGATATTTG TGTAGAAAGGTGCGAGCCGAATTTCGCATATTTTGTCTTAAATCACCAAA TCTTCCAAGTCTACCAATCACTAAATTAAGCCCACGCCTAAGTCAATCTA TTTTTTAGGGTAGCCTTTACAATCTTTGTCCGTTTCTCATTTAGTTTTAA ACATGCGCAGCCAAGTGGAAGATGAGCCACCAGATCCACAATTAATGCGA TTGGATAACATGTTACTTGCCGAAGGCGTCGCAGGAAGTGATAAGAGCGG AAGTACGGCCGCTGCGGCTGCAGCTGTTCACGATTCGCAAATCGAGAATG TGGATTACAAAATGAAGCTCTCGCAAATCCGACAAATTTACCACACCGAG CTCGAGAAATATGAACAGGTACTTATAGGTTGAAGTCACTGATCTTTATT GGACCTACCTCCGGGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTC CGTTCGTCTGTTCTTTCGTCTGTTCGTCTGTCCGTCCGTCTGTTACCAGC TTTTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNTGGGCCTGAATGGTTTAAGTGATTTTCG TATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCAACACACAAGCT TTATTTTTCCATTCTGAATTTTGGTACAATTATTGTCATTTTTTTCTTAT TTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTT AACCCTGAACTAAGCTTTTTCCAACATCTATGATCTGAGTTCTTAGAAAT GGTGCCTACTAGTTGCAATACTCAATTTGGGTCAGTTTAGATTTAAAGAA ATTTTCCGTTTTGTTTTCACTCGCACTTTCGAAAAACTCCAGTAAAAGAT TTTGTTTGCTGGGATCGAGAAACTGTGTCAAGAGTATATAGAAGTCAGTG GTTGAGGTCGATTCTCATCCATAAACATCAACTATGTGGATACAGGCAGC GTTTTTCTTTTTGAAAAATTCAGGAACTCTGTCTAGTCGTCCATATTCGC ACTCACGTTTAATGATTTCCGACTATGTAAATAATGTGTCTAAGCTTGTC TATCAACGACCCCCGTTTCCTTTTGATATTGGTCATTCGTGCAAAAGAAG TAATACATGTACTTATTTATTTGAGCATAATTCAAAACGTTCCGAAACAA TGTTCCTTTGAGATACCTTAATCATTCTTATATTGCTCGGGAAATTCTTT CTTACAATCCAGTCATAAATATGAAGCCTGATAAAAGAACTGCCTTGTCA AGAATTCGGTATACAGCCCGTGGAACTCATGAAACTTTTATAATATTATC ACTTAGGCTTGTTCCGAATTCACTACTCNTGGAACTCATAAAACTCTTAT AATATTATCACTTAGGCTTGTTCCGAATTCACTACTCACGTGATGAACTT GTTACGTGAGCAGTCACGTACGCGACCCGTCTCCAAGAACGAGATCGAAC GTATGGTGAACGTCATCCATTGGAAGTTCAACTCCATTCAAATGCAACTG AAGCAAAGCACCTGTGAGGCTGTCATGATTTTGAGATCTAGGTTCCTTGA TGCAAGGTGAGAATGATTTTATACCGAAATCCCACGGTCATTACCAGAGC ACGGTGGTCCTGATTACCCATAATTCTTTTCGACCCTTGAAATGGCCTAT AATATGCATCTTTATAAAATTATATTCATGACAATTATAGCAAAAAGTAT CTATTCGCAGACACGTATTCCGTCCTTCCCAGGACTCATCAGTGCGGCTC GGGTAAGCGAGCATAGACTGCTGTTGTCACCAGAGTGCTCAATACACTAA GTGTTGAGCTTCGCATAATCGCTTGTGGTGAACGGAGAAGCAGATCTTGC TCCTCAACAGAGTCTATAGAGTGCTCAAATAACCGAAATTCTGAGCGTAA TACATAACAAAAAGTATCAATACATAGGTAATAGTTATCGGACAGTTGCG AGTACAATATGAGAAATATTTTACGAGTTCCGAGATCTTTCCGTAGGCGA GGAAAATATACGGAAAATCCGGAACGAGTGAAATATTTCCATATTGTACG AGCAAACGTCTGATAACTAGTTTATCGGTGACCCAAAAAATGCACTTTTT GTGTTGGAGGACACTTTTGTAGCAAAGTGACGTTAGATTGCTTCTACNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNCAACATCTTTTCGTCAATTTATATTTTTACATGTAAAATAC AAGACATATTGTACTCTTTTTAACCAATCAGATTGCAGATATTTTTTGGA TCGCCGATAGCAAAAAGTATAAATTAGATCTGTTAAAATATTAAATGTTT GTTCTCTCTACCAGACGGAAAAGACGTAACTTCAGCAAGCAGTCGACAGA GATTTTGAACGAATATTTTTATTCGCATTTGAGCAACCCTTATCCGAGTG AAGAAGCCAAAGAGGAGTTGGCTCGAAAGTGTGGTATCAGTGTTTCACAA GTAAGGAGCTACACGTTAAAAGTTTTATTTTTACACAGTTCCCTGTTTCA TATCAGACACATTTTTAGGTCTGCCTTTTGTTATACGGTATTATGCTGAT ATAAGCATAAAAATATTTTTCTTTTCCTCTTTCCGACCAATCTTGCTCCA CATCCATGTCAATCCAATGTGAAAAAGCTAAGATTACAAACGATATCACT CTTAGTCTTATTTAAAAACAAAACCTTTTAAAGGCAATGTACTACTATTA CTATTGGTCATTGGTTGCTGCACAAGCGACGAGGTTTGGTTCAAGTGAAC GAACCTTAGCCTGGGTCAGCCCATTCCATATGAGGGGAATTAAGTAGTCG CTCTAAGGTGTGAAGGGAATCAGGTAGTCGGTCTCCGCTGCTAACGAGGT GCTCATTGAAAGCGACTATAGTTGCGAAAATAGGCCTTGGAGCATCCTGC AACTCAACCAAATAAAAACAAATGGAAATAGTCATTCTTCCTTTTGTAAG CAACCGTAAGGCTCAAGCTCTGAAATCAGCCTAAAAAATTCGTCCTGTAA TGTTCTCAAGGTCAAGATAAAAATATTATTATGGGAGGTCCTACAAAGTT TTAAACTCCAGCCCTGAGTCTAAAATCTGTGTTGCTTAGATAATGTTTCG ATACCTGAACCTGTTTCCATACAAATCAAGACCACAGAGTTTTGTAATTA ACTCTTCTACAAGAGAAAAAAAAAAGTATGCGCCTCTAGTTCCAATTCCC ATCCCGTCATTAGGTTTCAAATTGGCTTGGGGAACAAGCGAACTTCATAG ATGATAGTCTAGCTAGCCAGCTGGCCGTGGACCCCGTGGAAATAATCGAA GCCCTGTATTACTAGGCTATTCACGTAAAATAACGACTCTATCGATCTAG CCATATTGAACAATTTTCACACTAACTCAAAAAAATTCCCTTCCAATCAT TAGGTTTCGAATTGGTTTGGAAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036148XLOC_036148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057376-exon-scaffold_288-1575043694:489446..489671TCONS_00057376-exon-scaffold_288-1575043694:489446..489671Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1575043694:488416..488654TCONS_00057376-exon-scaffold_288-1575043694:488416..488654Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1575043694:487915..487988TCONS_00057376-exon-scaffold_288-1575043694:487915..487988Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1575043694:487054..487277TCONS_00057376-exon-scaffold_288-1575043694:487054..487277Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1575043694:485366..485556TCONS_00057376-exon-scaffold_288-1575043694:485366..485556Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1575043694:484222..484357TCONS_00057376-exon-scaffold_288-1575043694:484222..484357Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1575043694:483245..483268TCONS_00057376-exon-scaffold_288-1575043694:483245..483268Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1510915933:489446..489671TCONS_00057376-exon-scaffold_288-1510915933:489446..489671Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1510915933:488416..488654TCONS_00057376-exon-scaffold_288-1510915933:488416..488654Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1510915933:487915..487988TCONS_00057376-exon-scaffold_288-1510915933:487915..487988Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1510915933:487054..487277TCONS_00057376-exon-scaffold_288-1510915933:487054..487277Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1510915933:485366..485556TCONS_00057376-exon-scaffold_288-1510915933:485366..485556Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1510915933:484222..484357TCONS_00057376-exon-scaffold_288-1510915933:484222..484357Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1510915933:483245..483268TCONS_00057376-exon-scaffold_288-1510915933:483245..483268Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1491911889:489446..489671TCONS_00057376-exon-scaffold_288-1491911889:489446..489671Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1491911889:488416..488654TCONS_00057376-exon-scaffold_288-1491911889:488416..488654Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1491911889:487915..487988TCONS_00057376-exon-scaffold_288-1491911889:487915..487988Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1491911889:487054..487277TCONS_00057376-exon-scaffold_288-1491911889:487054..487277Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1491911889:485366..485556TCONS_00057376-exon-scaffold_288-1491911889:485366..485556Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1491911889:484222..484357TCONS_00057376-exon-scaffold_288-1491911889:484222..484357Clytia hemisphaericaexon
TCONS_00057376-exon-scaffold_288-1491911889:483245..483268TCONS_00057376-exon-scaffold_288-1491911889:483245..483268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:483245..489671 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25794 1.80965 0.008011 0.018997 0.170589 1.47718 0.281796 0.389169 0.0110855 0.326737 2.52044 1.38774 2.61219 2.39515 0.637373 0.0131053 0.180992 0.378176 2.66832 0.013113 0.469591 0.655821 0.829244 0.0935689 0.315005 1.38999 0.311901 1.61132e-08 1.2826 2.20591
Blast
BLAST of TCONS_00057376 vs. Swiss-Prot (Human)
Match: PBX3 (Pre-B-cell leukemia transcription factor 3 OS=Homo sapiens GN=PBX3 PE=1 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 1.300e-142
Identity = 205/262 (78.24%), Postives = 230/262 (87.79%), Query Frame = 2
Query:  347 PPPPQMLDDENTEMRKQEIGDILHQIMNITDQSLDEAQARKQALNCHRLKPALFTVLCEIKEKTVLNMRSQVEDEPPDPQLMRLDNMLLAEGVAGSDKSGSTXXXXXXVH------DSQIENVDYKMKLSQIRQIYHTELEKYEQACSEFTTHVMNLLREQSRTRPVSKNEIERMVNVIHWKFNSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQSTEILNEYFYSHLSNPYPSEEAKEELARKCGISVSQVSNWFGNK 1114
            PPPP   +  + + RKQ+IGDILHQIM ITDQSLDEAQA+K ALNCHR+KPALF+VLCEIKEKT L++R   E++PPDPQLMRLDNMLLAEGV+G +K G +AAAAAA        D+ IE+ DY+ KL+QIRQIYHTELEKYEQAC+EFTTHVMNLLREQSRTRP+S  EIERMV +IH KF+SIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQ+TEILNEYFYSHLSNPYPSEEAKEELA+KC I+VSQVSNWFGNK
Sbjct:   28 PPPPHGHEGADGDGRKQDIGDILHQIMTITDQSLDEAQAKKHALNCHRMKPALFSVLCEIKEKTGLSIRGAQEEDPPDPQLMRLDNMLLAEGVSGPEKGGGSAAAAAAAAASGGSSDNSIEHSDYRAKLTQIRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVGIIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNK 289          
The following BLAST results are available for this feature:
BLAST of TCONS_00057376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PBX31.300e-14278.24Pre-B-cell leukemia transcription factor 3 OS=Homo... [more]
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