TCONS_00057378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057378
Unique NameTCONS_00057378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057378 ID=TCONS_00057378|Name=TCONS_00057378|organism=Clytia hemisphaerica|type=transcript|length=1441bp
TCTTGACCTCTAATGTTTGATGATATACTGCTTGCTTGACTTTGTGCTCC
TGGACAGaaaataaaaatgagggTTGGTACTGCATTTGCAAGTTTAATGC
GGCGCAAGAAAAGGGTAGGTCTTGAAAGACGAATTGGATACATTTCTCCA
GAAAATAATGCTGGTATATGGCATGGTGCTAGTGTCAAGTCTGGATTCAC
TGaaacattttctggaaaaaaGACGAAACGGTTTTGGTACCCTAATGTGT
CAGAGAAGGAGATCTATAGTGATATATtagatgaaaaaatcaaaaccact
TTCACAGCAAAAGCTCTGCGTGAAATTGACAATGCTGGTGGCTTTGACAA
CTACATTATGCGAACTCCAGATAAAGTACTTTGTTCAAACTTTGCTATTG
AGTTGAAGCGTCAAATGGAGACTGTACAGAGATTTTCCAAACACACAGAT
ATGTCTTTAGAAGAAATCAAAGCCGAAATCACTCCAGTCAAACTTTCTAA
ACATGTCTGGATCCAAAGGGATTACACCAATAGGTTCTATTTTGATTGGA
AGGGTCCTAGAAAGCATATGGTTTTCTGTTAAAGTTTTGATTCTGGCGTG
TCTAGGAATACTTGAATGTAGTGTGATCAAATCATTTGATTAATTGATTG
GTAGTTATGAGCTTTACTGTCAACCTTGGAAAACAGATCTGTCTTTGACG
AATGGTTGGCCTGATACTATCTATTGATAACAAACCAGATTCAATTATTA
TATTCTTGTTTTTCAGTCAAGTATTTCAGGATACCTTCTTCAAGCTTGTA
ATGCATTTTTATTCCAGCAAAGTGTAAGAAAGCCATCTAATGGATACTGA
GCATACACGCAGGTTTTATGTTGTATTTTGTAATGTTATTGTTATGTGTT
TAAATTATTCCAGACATAATTAAAAAACCAAAGCAATCAAATGAGCTCTC
TTCGGCAATCTTAACGAGGGACCTATAATTAGAAGTTATGTGGTTTAAAA
CCATTCAGcacaaattatagaaaaattatattttcttttctaatcGCGAT
TAAAATAATGAGAAGTCATTTCCACTATCCTGTAATCACGTTTTTATTTG
TCTGTTTCTTTCACCCCAGACACATCTCTAACCTTCTCTACGTGGTTTTG
TTTAACTAGACTGTCaataaatttctatttttaccaCAAACTCCAGGTGT
CTCTTTGACCAAATTAACTGGAAATAATTAACGTTGAGAATATAAATTCG
CTATTTTCAGTTCATCATcagtaaaaaattttcaaagtagcAATTGCTGT
TAGTTTCCTGATAAAGGAGATCATTAAAACTTAAAGCTCATCTCTTAATT
GGTTATGTTATAACTTGCAGCTTATTTTCTGCATCTTCTTGTTTCACCTT
TCTAAGCCTTAGAACTTTTGTAAaagaatattttatatttt
Run BLAST on NCBI

protein sequence of TCONS_00057378-protein

>TCONS_00057378-protein ID=TCONS_00057378-protein|Name=TCONS_00057378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MRVGTAFASLMRRKKRVGLERRIGYISPENNAGIWHGASVKSGFTETFSG
KKTKRFWYPNVSEKEIYSDILDEKIKTTFTAKALREIDNAGGFDNYIMRT
PDKVLCSNFAIELKRQMETVQRFSKHTDMSLEEIKAEITPVKLSKHVWIQ
RDYTNRFYFDWKGPRKHMVFC
Run BLAST on NCBI

transcript from alignment at scaffold_288:490716..503614-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057378 ID=TCONS_00057378|Name=TCONS_00057378|organism=Clytia hemisphaerica|type=transcript|length=12899bp|location=Sequence derived from alignment at scaffold_288:490716..503614- (Clytia hemisphaerica)
TCTTGACCTCTAATGTTTGATGATATACTGCTTGCTTGACTTTGTGCTCC
TGGACAGGTATAAGTTTTTATATTTTACCCTACAATATTTGTTAGTCAAG
GAAATTATATTTGTGATGGGATGATGGATGGGCGGCGCGGGGGATGATAA
GCAATGCTTTGCTTTGTTTGGGTAGTCCAGGAGCTGGAGCTCGAATACTT
TTTGCTTTTACTAATTCTGATGGGGGAAAAAGTATAGCAGCGCCATCATT
CAAATCAGAAAGCGAAGATAGTATTAGGGAGGGGACTTAAAAAAAGAAAA
TTAGAAAGAATTTAGTGGCATATGTACAAAAGCTGCCAAATTATATAAAA
AGAAGGAAAAAATCAAAAATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNACAAATATTGCAAAGAATTGAATTGGATATCACTGTCAGTCCTAGGAG
AGAATTTGCCCTAGCAATGGACTATTCAATAATCAAAGAGAAATCTTACC
AATGTTAAACAATTATTTAACCTATCTGTATTTCTCAAACTTAGGCCAGT
ACTCTCGGGTACCTAATAGCCGGGGGTTTGGAATAACAGGGGGGGCATAG
TGCGGAAAGGGTCTGATCCCCTTCTTGGCAACCCCCCATTCTTTAAAAAT
ATCTATTCCCCAAGGGTTTTGGGCTAAATATATAGTGTATAGTGTGATCC
GATAATCCCCTCAGACTACTCAAACAGAAAAACTTCCTTTCATGCAGACC
AAATTCATAACAACGCTGAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGGTCCCCGGTCAAA
ATTTTTGATTTTTTTCTTCTTTTTATATAATTTGGCAGCTTTTGTACATA
TGCCACTAATTGTTTTTTTCTAAGTCCCCTCCCTAAATTAGTATACGGCA
GATTTTCTGACTATGCTTTGGGCCATTTAAAAACGGGTAGGTAGAAAACC
TGGCCCACCTCTCTGGCCCGGGCCATGCATATGGCCTACCCTTGGCCTCC
TACCCTTTAGCCCACCTTACAACTCTAAAAAAGATTTGATTCTTATCATT
CTGAAAATCTGAAAACCAATTCTGAGGTTGGACTTTGGTTTTTCTGGCAT
TTAGAAAAACTTATAGAAAAACAAAACGAGACTGAAATAAACAAAAAAAA
ATAAAAAGTTTTGAGTCTGCATTTTATACACCTGACATAGATTAAGGGGA
CCCCCGGGAGAGGGTCTGGTTAAGTCCTGTACAGGTGCCAACAACCCCTG
TAGCGCTGTTTCTTCAACTTTTCAGGACTTCGGCGGACGACCCCTTTTTT
CGGAATCTTCACCCAAAAAAAACATAAAGTATCAAAACCTGGCAAAAAAC
TTTGACGTTGACCCGAATCCGACTCGAACTTGGGATCCCTAGTGCAAGAG
CACAATGCGCTATCATTTGCCTGACTTCTGTTGAAATAGAATAAAATTTT
TAAGGCACTTATCCCTTGGTCAGATAGACAAGACCTACATTGTAAAGACT
ATTTCACCCTCAATTTTGGCACTTTCTTAACTCATGGTGCCATAGTATAG
TGGTAGTCGACCTTGGCTTCTGTGCAGGCGGCCAGGGTGCGATTCCCACT
CACGGCAGTTCACTTGGCAAGTGAACGTTCCTTCGCCCGGGTCAACCCAT
GCCATGTGAGGGGAATTGGGTAGTCAGTTCAAGGTGCTGACGGGACGCTC
ATTAGTAAGCGTCTATAGTTGCGAGAATAGGCCTCTAAATAAGCCTCCTG
CAACTCAACCAAATAGAAAAAAAAAATTAAGAATAATTGACCCTCTCATC
CAAAGTACACTATTCTTATAAAAAAAGCGTTTAATTCTTAGAGCATTTAG
AAGATTTGACCAATTGTTTGTCGTAAAACAGCTGATGCAATAACGCCACC
GCGCTTTATGATGAAATCATAATGAAATTATAGCGCATCCTGACGCACAC
ATATCATTATAACCTGGTTGTCCGAGAATAAAATCGGGGAAAAAATGTTT
GAAGGTTGGCCAAAGGGTGGGCCAAGGGTAGGCCATATGGCCCGGGCCAG
AGAGGTTGGCCAGGTTTTCTACCTACCCTTTAAAAACAGCAGAGAGCAGA
AAGCTTGTGTTGTCGTTCGTGGCCCACTTAGCTTTTTTTTTTGGTTGCTG
ACTGGCTGAAGAATGTCTTTGATGTTATGGTAAAGATATATGTGGCATAA
AATCCTACAGTCGCCAAACAAATTCAAAACCTATGCCATTTGAAAGCCCA
TCATACAGTAAGTCATAACAGGAAAAATGTAAAGAGGGGTCATTTACACC
TGGCAAAAAGTTTTAGTTCTTGAGATATATCAATTTGAAGCTCCAATTTT
ACAGCTCCTTTGGTAAAAAGACTCCCCAGCTAAATTCCAAAATTTTTTAG
CACTCATTTTCGATTTCGCTCAACCAAATCTCACCAAGGCAGCACGCATG
CGCGAAAACCAAATAATCCCAGTGAGAGAAGTTTATATCAAAATCTGCAA
CAAAAACAAAAGTGGTCTCTTCTACTGATTGTTTCCTGGCGCTCTTTCAC
AGCTGTTTATCAAATTTCCACCAATGAGATTGCCGCATTTCACACGTCTG
TTGTTCTTTGTAAAATCCCACCATTCATATATTTGTTTCAATCCGTGATC
CTAAGGCTTATGTTTTTTCTCATCCTCAATTTCAGTAAGGGCTTCTTTTC
ACTTTATCGATATTATGCGAACGGCAGTGTGCGCTAAACTATTTTTGTTT
CACTTTTGATTTCAAGCAAATGTCTTAGCAACAGGCAGTTTGTCACACTA
GGAAATCTAGCTTTCAGAAAAAAACAACATCAGTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGAAACAAA
ATAAAACGTGCAGCAGCCAAAATCAACCAACCAAAATTTGTCATTCAATT
CCCGAGACAGCGCTTCGATTTCTAAGGCCTTGTTTATACGCTAAAGTAAA
AATAATTCCGCATATGTAAATATGTGATTGTTTGAGGTCCGGCAAAATTT
CCGGGAAACAGCCTATCCGGTGGTGCACGGATCTAGGTGGGTTCCGCCTC
CCCCGTAGATCTTTTTCTTGGGAAGTTGATCTTCAAATTAGTTTTCAAGG
TTGGCTTGGCTCAAATTTTTTCATCTATGGCTCAAATTTTAGGCAATATC
TCAAAGTTTTTGAAAATGTTAATTTCATTAAAAAGCGCCAGGTTATTTTT
TCATGAATCCCTTTAGAAGTTTTGCAGTGCATTTTTTTGCTTGAGAGTCA
AGTAAACGATATAGCGCTTTCGCTTTGATACGCATTTTGACAGGATGCTA
GTGTGACTAACTGACAGGGCGTGCGTACATAACAACAGGGCTGGGTAGAA
AAATCCAAACATAGAATTCAAAAAAAATACCAATCATCAGAATTTGATGT
GATAGAGTAAGATTGTCAACAAAGTGCCATAAAAAATCATTGAATAAAAA
AAGAACTTTAAATCTTATATATATATATTTTCATTTTGAAGAATGGTGCA
AAAAAGTGAAAAATGGAAAAGTTTCATTTTTTATTGGTTCAATTGATATA
GGGGATTTGGAAAACTTTCTATGTTTGTTTCTTTGCACAAACCCCTGTAA
CTATGGGCGAGCACCACGTTGTTAAGATGTTGGCTTGAAATTGAAAATGA
AACCACTGAAAATGAAAGTAAAATTGGCCCCCACTCCAAATCCTGTAATC
TTGATATATGAGTTTAAGCATAGACTGCCAAACGGTACTAATTGAACGTT
TGATTGTAATAGATAATAATCAAATATTTAATTGAATGTCATTGAATGAT
GACTTATCAATTATGCTGAAATTTTGAAATACACGTTGTTTTCTTTAAGA
AGTGTTTCTTAAAAGAACTTTTAAGAAACATGAGCCTCAGAATGCCTAAA
AACTAAGAAACATCTAAGAAACATGCTGAGGCTGAGAATGAGAAAAAAAA
CATTTTTAAATTGTTTTTTTTAAGAACCTTCCAATCCAGCCTTCCATGAC
AGTTAGGAACATATGTCGAGTTCCTGTACGCGGCCGAAATCAAAAAAATC
ATAACCACACTCATAAAAAATTTATTTTTATGTCTTTTTTTACCGTTTTT
TGCTTAGACAATATAGCAAACATAAAGTACAAGAAGACTACTGTGCCTTT
AATTGGCTGTAAAAAAATTTCGTGTCTGTAGAAATTTCTCCAAATTTCAA
CAATGTATGAACACACCTATTTAAACAAAATTAACCAGCGCATTTTTTAT
CTTTCTACTTCATCTTCAATGAAGCTCTCAAAGTCAAAAAGAATTAAGGA
CATAAGATATTCTTATAATTTATAATTATTAATTAATTATTATTATAATT
GATTTTTCAGGGTTCAAATTATAGCTTCCCACTTTGCAGAATGCGAAGTG
AATCTTAGATTTAGCAACCCAAAAAAATTTCCTAGCTCAAAAATGCGAAG
TTAAAAAAAACGTCTATTTTGCTACTTTCTTCTTTTGTTTATCTATTGCT
TTATCAACTTGCTACTTCGTACTTCGCAACTTTCTTTATTCGTTTATCTC
TCGCTTTATCAACTTGCTCCTTCGCAACTTTCTTTATTCGTTTATCTATT
GCTCTATCAACTTGCTGCTTTGCAAATTTCCTCATTCGTTTTAATATCTA
TCGCTTTATCAACTCGCTACTTCGCAACTTTCTTTATTCTTTTATCTATT
GCTTTATCAACTTGCTGCCTCGCAACTTTCTTAATTCATTTATCTATTTC
TTTATCAACTTGCTACTTCGTACTTCGCAACTTTCTTTATTCGTTTATCT
CTCGCTTTATCAATTTGCTACTTCGCAACTTTCTTTATTCGTTTATCTAT
TGCTCTATCAACTTGCTGCTTTGCAAATTTCCTCATTCGTTTTAATATCT
ATCGCTTTATCAACTCGTTACTTCGCAACTTTCTTTATTCTTTTATCTAT
TGCTTTATCAACTTGCTACTTCACAACTTTCTTGATTCGTTTATCTATTC
TTTATAAACTTGCTACTTCCCAACTTTCTTTATTCGTTTATCTATTCTTT
TCAACTCACTACCTTGCAAATGTCTTGATTCATTTGTCTATTGCTTTTTA
TCAACTCACTAAAGTTTGCTTCGACTACAATCTCTTACTTCACTTTTCTA
GAGAAATACATTGAATATACTTATGCATTTTCTTCCAAACAGCATCGCAA
AAATGCTTCGCAAACAGTAAAACAAATTTTGCCTGCGTTGCTAGCTTTTT
TGCGAAGCTCCTAAAATTTATAATTCGAACCCTGTTTTTGATATTCTTAG
TTTATTTTTTCACCAAGGATAAGTAGAATGACTAACCTTTCTAATTGTTT
TGGAGCGAAATTAAGTGGCTTACTAGGTTACACGGGTTACAAGATATTTC
AAGATAAGCTATGAGTCGTTTATGTGGCTGACAACACTGGTGGCTTTTGG
AAACCAACCAGTTTCAAAATGTTGCTCTTTTATCTGTTTTGAGATAATAT
GATACCTCTAGTTACTGATTCAAGTGTGATTTTCAAACAAACCATTTTCT
CCTTTGAGGTGGCTGACAAAATACATATTTGGACATGGAATCACACATTT
TACTCATTTTACCATTTTTTTCATCATAATATGTTCTTTGTGTAAATACA
TCATCATATACAATTTCAACGTTATATTTGAAATATTTCCCAAGTTATTC
AAGAAATACTTACTATATTTTTGTCAATTTTTGAGTCATTGGCTCTCACA
CTAAATGTCACACTATTTTTTAACATGATCGGTATTACCCCAAATATTTT
CAGGTTACTTGCTGATTTTGAACTTAAAAAGTCCCGAACATGACACAAAA
TTGGCCCGCTCATGGTTTGGGAGGAAAAATCTTAAATTTTGTGGCCTGAC
TTGAATGTTTTCTTACTATTTGGCTCAAGCGTGACCCGAAAATGTTATGA
GTATTTTCAGGCCATATCCTGGGTCATATTAAGTTTATGGTTGGATGTGT
TCTGAAATCTAAGAAAAGCTTGTTGCCAAGATATACTTGTAAGATATTTG
TTTTCCATTAAAGATCTACCATGAAAACGGGTAACTTGCATCAGTAGAGG
CTAACATGCATAAACCTCAATTAATTGATTTTTCTGGTCGTGGTTTTCTC
ACCTTGTATATGAAAATTGAATTTAAAAAAACTTATAATCAATTGAGGAA
AGATCATCATAATAGCAATAAATTGCATCTCCCAATAATGAATATATGCT
TATATATTTGCACCATATCACAGAAAAGCCTTCTGAACTCAAAAGATGGA
AGTTTGAGTCTTTTTAAACGTTCTTCGTAGTGGAGATTACAATATTGAGG
AGTCAGTCTTGTCACCTGTCTTTGAACACGTTAAAATCTAATTTATACTA
CAAGTACAACGTAATTTTGGCTGCCATACTGATTGTGCATATTCCAAGTG
AGGTCTCACAAAGGTGGTGTACAGAGTACAAAATGCCGAAGGACTCAAGT
CGTTTTAAAACAATAAAATAAATACAAAAATAATTGGTATTAAAAAAGTT
TACTATTTTTTAACAAATTTTAACAAATTAAATAGTTTATAAAATGGACT
TTGATGGAAAAAAATGGAATTTCAAAGTTATGTTTAAGAAATAAGGTATT
GTGAAAATAATTCAGCATATTAAGAAGGATCTTTTTTTTTCAACGGTGTA
TAATTTTCTTAGAATTGAAGCCTTTGTGGAAAAATAGCAATTTCTTCAAG
TTGGATAATATCTAGAAAATTGCAATTTTCTAATCAAATCCAACTGTTAA
AATATATTATCTGAAGGGAAAAAGAGAAGGCAAACCTAGGTTGTACAAAG
AAAAAAAAACCTATTTAAAATTTTTTGAAGTGCAGACCTAGGTAAAGCAT
TTTTAGAGCATTTGTAGTAAAGAATGTAAGTATTCTCAACTTCAGTTGAA
CTAGAATCTGACAATGTATGGGGCAGGCTGGAGACTTCAAAAATTGTCAG
AAATTTGGCACACTTGTTCCTTGATTGAATTCCCGGGGGTATTTTTTCAT
TTTTTGAAAATTTCAATTTTCAAGGGGTTGGTCAGGAGTTTTCACCAAAA
CATGGCTAAAACTTTGGGGCAGTCTGATTTTAGGGACCTGGAAACAAGTT
TTTCATCAAAACGAGGCAATTTTTTATTGAACTTAGCCTATCAATTTTAC
AATTGGGTCTACGAATGATAAAAAAATACTTCTTTATCTAAAAGTCTGAT
ATTGGATTTATATTATAGAAAATAAAAATGAGGGTTGGTACTGCATTTGC
AAGTTTAATGCGGCGCAAGAAAAGGGTAGGTCTTGAAAGACGAATTGGAT
ACATTTCTCCAGAAAATAATGCTGGTATATGGCATGGTGCTAGTGTCAAG
TCTGGATTCACTGAAACATTTTCTGGAAAAAAGTAGGTTTATATTTCATC
TGATCTGATTCTTAAATGACGATAAAGCTGTCTAGGTGTCTTCTCAGTTC
TGTAGCTCTTATTTTATTATAGAAGAAAGGTTTGAACGACTTTCATAACA
CTCCTTTCTTAAAGCTTTTTCTCAACAGATTAACTTCGTTTCAGATTCTT
AATCCTTTAAGAGACTTGGTTAAATCTTACAAATTTTGTATTAGCTTATA
CTTTTTCTATGGTTCTTTTCTCCATTGAATTTTTCGATACTTTTCTCTGA
TTAATTTTTAATTTCGTTTTGAATTTTAGGACGAAACGGTTTTGGTACCC
TAATGTGTCAGAGAAGGAGATCTATAGTGATATATTAGATGAAAAAATCA
AAACCACTTTCACAGCAAAAGCTCTGCGTGAAATTGACAATGCTGGTGGC
TTTGACAACTACATTATGCGAACTCCAGATAAAGTACTTTGTTCAAACTT
TGCTATTGAGTTGAAGCGTCAAATGGAGACTGTACAGAGATTTTCCAAAC
ACACAGATATGTCTTTAGAAGAAATCAAAGCCGAAATCACTCCAGTCAAA
CTTTCTAAACATGTCTGGATCCAAAGGGATTACACCAATAGGTTCTATTT
TGATTGGAAGGGTCCTAGAAAGCATATGGTTTTCTGTTAAAGTTTTGATT
CTGGCGTGTCTAGGAATACTTGAATGTAGTGTGATCAAATCATTTGATTA
ATTGATTGGTAGTTATGAGCTTTACTGTCAACCTTGGAAAACAGATCTGT
CTTTGACGAATGGTTGGCCTGATACTATCTATTGATAACAAACCAGATTC
AATTATTATATTCTTGTTTTTCAGTCAAGTATTTCAGGATACCTTCTTCA
AGCTTGTAATGCATTTTTATTCCAGCAAAGTGTAAGAAAGCCATCTAATG
GATACTGAGCATACACGCAGGTTTTATGTTGTATTTTGTAATGTTATTGT
TATGTGTTTAAATTATTCCAGACATAATTAAAAAACCAAAGCAATCAAAT
GAGCTCTCTTCGGCAATCTTAACGAGGGACCTATAATTAGAAGTTATGTG
GTTTAAAACCATTCAGCACAAATTATAGAAAAATTATATTTTCTTTTCTA
ATCGCGATTAAAATAATGAGAAGTCATTTCCACTATCCTGTAATCACGTT
TTTATTTGTCTGTTTCTTTCACCCCAGACACATCTCTAACCTTCTCTACG
TGGTTTTGTTTAACTAGACTGTCAATAAATTTCTATTTTTACCACAAACT
CCAGGTGTCTCTTTGACCAAATTAACTGGAAATAATTAACGTTGAGAATA
TAAATTCGCTATTTTCAGTTCATCATCAGTAAAAAATTTTCAAAGTAGCA
ATTGCTGTTAGTTTCCTGATAAAGGAGATCATTAAAACTTAAAGCTCATC
TCTTAATTGGTTATGTTATAACTTGCAGCTTATTTTCTGCATCTTCTTGT
TTCACCTTTCTAAGCCTTAGAACTTTTGTAAAAGAATATTTTATATTTT

Coding sequence (CDS) from alignment at scaffold_288:490716..503614-

>TCONS_00057378 ID=TCONS_00057378|Name=TCONS_00057378|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_288:490716..503614- (Clytia hemisphaerica)
GACGAAACGGTTTTGGTACCCTAATGTGTCAGAGAAGGAGATCTATAGTG
ATATATTAGATGAAAAAATCAAAACCACTTTCACAGCAAAAGCTCTGCGT
GAAATTGACAATGCTGGTGGCTTTGACAACTACATTATGCGAACTCCAGA
TAAAGTACTTTGTTCAAACTTTGCTATTGAGTTGAAGCGTCAAATGGAGA
CTGTACAGAGATTTTCCAAACACACAGATATGTCTTTAGAAGAAATCAAA
GCCGAAATCACTCCAGTCAAACTTTCTAAACATGTCTGGATCCAAAGGGA
TTACACCAATAGGTTCTATTTTGATTGGAAGGGTCCTAGAAAGCATATGG
TTTTCTGTTAAATGAGGGTTGGTACTGCATTTGCAAGTTTAATGCGGCGC
AAGAAAAGGGTAGGTCTTGAAAGACGAATTGGATACATTTCTCCAGAAAA
TAATGCTGGTATATGGCATGGTGCTAGTGTCAAGTCTGGATTCACTGAAA
CATTTTCTGGAAAAAAGACGAAACGGTTTTGGTACCCTAATGTGTCAGAG
AAGGAGATCTATAGTGATATATTAGATGAAAAAATCAAAACCACTTTCAC
AGCAAAAGCTCTGCGTGAAATTGACAATGCTGGTGGCTTTGACAACTACA
TTATGCGAACTCCAGATAAAGTACTTTGTTCAAACTTTGCTATTGAGTTG
AAGCGTCAAATGGAGACTGTACAGAGATTTTCCAAACACACAGATATGTC
TTTAGAAGAAATCAAAGCCGAAATCACTCCAGTCAAACTTTCTAAACATG
TCTGGATCCAAAGGGATTACACCAATAGGTTCTATTTTGATTGGAAGGGT
CCTAGAAAGCATATGGTTTTCTGTTAAATGAGGGTTGGTACTGCATTTGC
AAGTTTAATGCGGCGCAAGAAAAGGGTAGGTCTTGAAAGACGAATTGGAT
ACATTTCTCCAGAAAATAATGCTGGTATATGGCATGGTGCTAGTGTCAAG
TCTGGATTCACTGAAACATTTTCTGGAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036149XLOC_036149Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057378-proteinTCONS_00057378-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057378-exon-scaffold_288-1575043694:503558..503614TCONS_00057378-exon-scaffold_288-1575043694:503558..503614Clytia hemisphaericaexon
TCONS_00057378-exon-scaffold_288-1575043694:492233..492396TCONS_00057378-exon-scaffold_288-1575043694:492233..492396Clytia hemisphaericaexon
TCONS_00057378-exon-scaffold_288-1575043694:490716..491935TCONS_00057378-exon-scaffold_288-1575043694:490716..491935Clytia hemisphaericaexon
TCONS_00057378-exon-scaffold_288-1510915933:503558..503614TCONS_00057378-exon-scaffold_288-1510915933:503558..503614Clytia hemisphaericaexon
TCONS_00057378-exon-scaffold_288-1510915933:492233..492396TCONS_00057378-exon-scaffold_288-1510915933:492233..492396Clytia hemisphaericaexon
TCONS_00057378-exon-scaffold_288-1510915933:490716..491935TCONS_00057378-exon-scaffold_288-1510915933:490716..491935Clytia hemisphaericaexon
TCONS_00057378-exon-scaffold_288-1491911889:503558..503614TCONS_00057378-exon-scaffold_288-1491911889:503558..503614Clytia hemisphaericaexon
TCONS_00057378-exon-scaffold_288-1491911889:492233..492396TCONS_00057378-exon-scaffold_288-1491911889:492233..492396Clytia hemisphaericaexon
TCONS_00057378-exon-scaffold_288-1491911889:490716..491935TCONS_00057378-exon-scaffold_288-1491911889:490716..491935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:490716..503614 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.2079	30.0753	22.0412	21.8509	16.2715	12.0294	20.5107	21.2815	29.5809	24.1366	18.2928	19.2936	14.2873	12.0132	19.6058	21.7069	29.9405	32.7265	8.29577	9.06532	21.7171	21.1857	27.4049	27.9468	17.9324	23.0958	20.6908	13.9065	20.9353	20.5156
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026569Ribo_L28/L24
IPR034704L28p-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00057378 vs. Swiss-Prot (Human)
Match: RM28 (39S ribosomal protein L28, mitochondrial OS=Homo sapiens GN=MRPL28 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 4.990e-16
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:  139 YISPENNAGIWHGASVKSGFTETFSGKKTKRF---WYPNVSEKEIYSDILDEKIKTTFTAKALREIDNAGGFDNYIMRTPDKVLCSNFAIELKRQM 417
            Y  PE+  G+W G     G     + K +KR    W P + E+E YS+ILD+K   T T + L  ID A G D YI++TP + LCS F ++LKR M
Sbjct:   70 YFPPESQRGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLKRGM 165
The following BLAST results are available for this feature:
BLAST of TCONS_00057378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM284.990e-1641.6739S ribosomal protein L28, mitochondrial OS=Homo s... [more]
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