TCONS_00057380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057380
Unique NameTCONS_00057380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057380 ID=TCONS_00057380|Name=TCONS_00057380|organism=Clytia hemisphaerica|type=transcript|length=470bp
TCTAGAAAGAATGACTTTCAAATGAATAAATACTCTTTTTTAAATGGCTA
CAAAAAACTTAACACGTTTGTATTTCAAATTTCGAGACAATCATAAAACA
CAACAACAGAGAGACACACCcaaaaaagatcttttcaaagcaagagcaaa
aaatGAAGAATCAATTTCTTTGATCAATGATGAGGATAATGAAGATGATG
GGCTTGGAGGATCCAACTTCTCGTCCCTTCCTCCTGAATgGACAACTGCA
GTGGAAGAAGTACAATATGATATATccaaaataatgaaaagaaTGAAAGA
CTTATCATCATTACACAACAAACATCTGAACAGACCGTCAATGGATGACA
ATATGACCGAAGAACACACCATTGATGTCACCACACAAGAAATCACACAG
CTGTTTCATCAATGCCAGCGCTGTATACAGTCCATTCAGGGACGATCCAT
GGGCTGCCAAAAAGCAGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_288:505515..510348-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057380 ID=TCONS_00057380|Name=TCONS_00057380|organism=Clytia hemisphaerica|type=transcript|length=4834bp|location=Sequence derived from alignment at scaffold_288:505515..510348- (Clytia hemisphaerica)
TCTAGAAAGAATGACTTTCAAATGAATAAATACTCTTTTTTAAATGGCTA
CAAAAAACTTAACACGTTTGTATTTCAAATTTCGAGACAATCATAAAACA
CAACAACAGAGAGACACACCCAAAAAAGATCTTTTCAAAGCAAGAGCAAA
AAATGTAAGTCTTTTTATCTTTTCTTGGCTATTCAAAGTAATTCCTGAAA
TCCTCATCTGTAGATGGAATTTTGTACTGTTTGGATTTGAAACTAGGGTT
TCTGTACTGGTTAATTCAGCCCAGATTTCTGTGCAATTTTGAGTTAGATT
TTTTGTAAGAAAGTTACTGTATGGAACAAAGGAAAATAGTCAAAGATCAA
AGAAATTTACCTTTACCTTCAATTGCAATTGATAGCAAGTACAGGGGCTT
TCAAAGTTTGTAAATTTGAATGGGGGCTTTCGTGAGCTAAATCTAAGAAA
ACATTTGCGGCATCACGATGGAGCGCNCTTTCTTGAGCTAAATCTAAGAA
AACATTTGCGGCATCACGATGGAGCGCATGACATCAACCATGCAGCAAAC
TACAGGCTTGTAATTTGTTCATTATATTGGGGTGGTGAGCACTTTGGCGA
TAGGCGCTCTCTAATTTGCCAATCGGCATCAGCCATTTTGAAGGAGAACA
AAAAATTCATTTGTCATGGTCTCTGCCACAGAAATGTTGGCTCATTTGTG
TTGTTAATGCTGAGTTTATGGACACAAAAATACGACCGTGCAGGACCGTG
TGCATTAGCAATTAGCTTAAAAATAAAAGTAAAAAATCCTGTTGTGTGTA
ATTCTGGACACCTCCTCCATATTCATAGTCAATTGTAACACTAACAAGGA
ATACAAATTGAATTAATTGAACTGTTCGGTTCAGAGACTGGATTTTCAAT
AAATTGTGAAATCCTCAAACTTTTGTTTGTAAATGTATCCAAAGATAAAA
TCTGATACTCTTACAGACAAAGTTTTGAAATAGTAAGTGTGATGATGATC
AATAGCCCTTTATTTATCCATAACATATTTTTCATAGGAAGAATCAATTT
CTTTGATCAATGATGAGGATAATGAAGATGATGGGCTTGGAGGATCCAAC
TTCTCGTCCCTTCCTCCTGAATGGTATGTTGTTGTTTTTTACCTAGAAAG
CTGTTTTTGTCATCATTTATTGTCAAAGTTTTACTACAATCATAGCTGAC
ATAACAAGATCTCACTTCAATAACTAAAAATCTTATCTGAACACTATAGT
AGGAGCCAGGTATATTCTATCCATTATTTATGAAAGTCAGTTATGGTTGG
TTTTAATTATAGGACAACTGCAGTGGAAGAAGTACAATATGATATATCCA
AAATAATGAAAAGAAGTAAGTACTCATGGATACCTACATTTGGGATCAGA
ACTTTACTATTTTCAGGCAGGGGGTCGATATAAGATAAAAAAAATTAAGA
AAATTAAGTAGCCTTTATATATAAGTTAGAGTGGATAATCAGATGGAAGT
TGACTGGGCTTCAATGGTATTTGCTGATCGAAAAACGATATAGAGGACAC
TTTAGCGGACATATTGATTTCCCAACGTAACTCTAGGAAATCAACTGGAA
ATGATGACGTCGAGAAGTAGCTTTGACATTGATTTTCTAAAGATAGGTTG
AGAAATTTACTATAGCCACTTAAAAGTCCTGTACATCGTTTTTCGACTGC
TTTCTATTGGTATAAGTGGTGTTAGGTTTTTTTTTACTTTGAAATGTTGT
CAAATTTTGTGGGTTGAGGTGTTTGCATGTGACGCAAATTCTGAGCTCTA
AGTTTCCTAGGCCTTAGCAGAAAAGTTGCGAAAGAGTCTTTAAATATTTT
ATTCTTTGAAATGAACCAGGTTTGGTTGCGTCGCATAAAAGATGTCACAG
GTCCTCAGGGTTTTCCCCTTACTACTAAGTATTGGAATCTATTTTCCACG
TAGAGTTTTATGCAATGACTCTCTTCTCTTCCTCGAAATATATTATAGAA
TGTTTTCAAATTGACAATTTGTTATGAGGATCAAAATGCCTCTGATCATC
CTTTTCCTTTTCTTTGCAACTTATAGAAATTATCCTTACCCTTTGCTTTG
CTTTTAACCCCAGTGAAAGACTTATCATCATTACACAACAAACATCTGAA
CAGACCGTCAATGGATGACAATATGACCGAAGAACACACCATTGATGTCA
CCACACAAGAAATCACACAGGTACAGAAAGTAATTCCCAATCAATTGGTT
TAAATATTGAAAATTATCGATATTTTTTGCTGAGTCAGCAGTTTTTAAGC
ATATTTACCCACCTTAAAAATGAAATATCTCAAGATCGGAACATCGAAAG
TTAACAAACCATACCATTTTCGGATATTACTAATTCAGGGCTATCCAGCT
GTGGGAATGATTTTTTCTGAAAATGCTCCCAGAAAAATGCTGACGTCATC
GGAAAACGCCAAAAACGTCGATTTNNNNNNNNNNNNNNNNNNNNNNNNNN
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CGTATGTTTCATTTCCTGTACCCAATATCCCAATCTCCTTCAAAATCACT
TCAATATAAAAACGTTTACAAATAAATGCAACGTTATTAGCATCTTTATC
AATGGGAACAATAACAAAATTTGTGTGAAGTTCATTTAAATAGTCAATGA
CATCTTTTCTCTTGAAGATATATATAGTACTTATATATAGTACTGTACTT
CAACTTTTTCCTACAACACAAAACGTTTTTGAAAATGAACGATGCTTGAT
GTTTCTTTTTGTAGCTGTTTCATCAATGCCAGCGCTGTATACAGTCCATT
CAGGGACGATCCATGGGCTGCCAAAAAGCAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036150XLOC_036150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057380-exon-scaffold_288-1575043694:510195..510348TCONS_00057380-exon-scaffold_288-1575043694:510195..510348Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1575043694:509226..509311TCONS_00057380-exon-scaffold_288-1575043694:509226..509311Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1575043694:508984..509036TCONS_00057380-exon-scaffold_288-1575043694:508984..509036Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1575043694:508129..508235TCONS_00057380-exon-scaffold_288-1575043694:508129..508235Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1575043694:505515..505584TCONS_00057380-exon-scaffold_288-1575043694:505515..505584Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1510915933:510195..510348TCONS_00057380-exon-scaffold_288-1510915933:510195..510348Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1510915933:509226..509311TCONS_00057380-exon-scaffold_288-1510915933:509226..509311Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1510915933:508984..509036TCONS_00057380-exon-scaffold_288-1510915933:508984..509036Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1510915933:508129..508235TCONS_00057380-exon-scaffold_288-1510915933:508129..508235Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1510915933:505515..505584TCONS_00057380-exon-scaffold_288-1510915933:505515..505584Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1491911889:510195..510348TCONS_00057380-exon-scaffold_288-1491911889:510195..510348Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1491911889:509226..509311TCONS_00057380-exon-scaffold_288-1491911889:509226..509311Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1491911889:508984..509036TCONS_00057380-exon-scaffold_288-1491911889:508984..509036Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1491911889:508129..508235TCONS_00057380-exon-scaffold_288-1491911889:508129..508235Clytia hemisphaericaexon
TCONS_00057380-exon-scaffold_288-1491911889:505515..505584TCONS_00057380-exon-scaffold_288-1491911889:505515..505584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:505515..510348 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3417	13.8394	0.538587	3.40674	0	4.59004	15.2751	12.7665	2.79205	12.1665	3.09429	1.64134e-05	0.44353	3.36223	1.22291	2.98454	0	0.836719	3.76594	0	2.85028	3.60588	7.38849	6.99617	0	0	2.00949	4.26429	9.42477	4.0302
Blast
[Close]
BLAST of TCONS_00057380 vs. Swiss-Prot (Human)
Match: STX16 (Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.619e-30
Identity = 44/80 (55.00%), Postives = 65/80 (81.25%), Query Frame = 2 
Query:  230 PPEWTTAVEEVQYDISKIMKRMKDLSSLHNKHLNRPSMDDNMTEEHTIDVTTQEITQLFHQCQRCIQSIQGRSMGCQKAE 469
            PP+W   V+E+QYD+ +I ++MK+L+SLH+KHLNRP++DD+  EEH I++TTQEITQLFH+CQR +Q++  R+  C + E
Sbjct:   75 PPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQALPSRARACSEQE 154
The following BLAST results are available for this feature:
BLAST of TCONS_00057380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX161.619e-3055.00Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3[more]
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