TCONS_00057396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057396
Unique NameTCONS_00057396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057396 ID=TCONS_00057396|Name=TCONS_00057396|organism=Clytia hemisphaerica|type=transcript|length=1578bp
ATAACCTTTGTAGATGACAGAGATGTAGATTTACTTGACGTTCCTGCGAT
TCGGTTCTGTCCAGACCCTGCTGAAGTTTTCAAAGATGTTTTTGTATGCA
GATGGTGTAAGGAGACGTTCAGTAGCAACACAATTATGAACAATCACTCA
AAGAAATGCTTTCAAAATCCAGCTAGGCGAACAAAGCAAGGACATAAAAT
TGTGCTTAATGAAACCGAGCTGAAACCATTGGAAAAAGAAGCAGGGAGCC
ACTTCACAATCGCACTAGAGTTAGCCATCAATGACAAGATCCTCAATCTC
AAACATGGAGAAGAGCTGACTCCAGGAAATCATGCTGCAAAATCTGCTAA
ATTCATTCTAGAAAAATCAGACCTCGTGTCAAATGAAATGAACACATTTG
CAACACATATTCAATCACTCTTGATTCCATCTGTCAATACAGACTTTTGC
TCAGAAGCTAGGCAAATCGGTTGCACAAAATTTTCAGCAGTAACTATTAG
TAAATCTGGAAGAAGCAAGTTTGCCACAATTTTTGATAAGTTGCTTATGA
ATAAAGATGGATTTGATGTTCTTTACACCTTCATTGTCACAAAAACCTTT
TCCTTGATCCTCAAATGGAAAAATGATCAGCTTATTGAACCCTCCAAGAT
TGATTACACCAGAGTGAGCTTCACGTCCGAAGAGGAAAAAGTACTCCGAT
ATGTTGCTGGTTTTATTCctttttcccttaaaaaaaggttttctcgTGTC
AAAGAATCTGAACTTAAGAAGGCTGCTCTACAGATAGTTGATAATTGGTG
TCTTGATGGAGATGAAAAGGATGCAACCGATTTTTATGATTACACGTTAT
CATGGACAAACCGAATAAATAGAGGAGGACTAATGATTGTTAAAGAACCA
TTTTATGTTTTCATTAGACGTATTGAAACTTATGTACGGGAAGTTTTAAA
TGTCACCCTGATTGAAAACTACAATGGAGAGGACTTGAGGGATATCATTT
TAAGCAAGCTTTTAAAAAGCATGAGCATCGAGAGCACATGGGCCTCATTG
AGTAGAATGGTTGTAtctgaaaaacttaaaatgactttaaaagAAATCAT
TTTAAAGAAATGGGTGAATTTGCGCGTACGTTCCTTTGTAACAGCCTGGA
TTCAAGTTGCTAAATTACGCCATACTGAAGATAAACTATCAAAAAAAGCC
GAAGTCGGTTTGAGGAAAGGTCTCagtgcctaattttttttattttatat
atattttttacaatgtttttttgaaacagGCAGAAGCAAATGTCTTTTTG
TTGCTTTTATTTATATATATCATTAATACTTACATGGGCTTTATATTCTT
GTTTCGACAAAGATTCCATTTCATCACCTCCTtgcaatttgaaatttctt
tactGAGGGGCACAAATGAGAACCAGGTGCTTAGTTTCCAGATGTGGGAT
GATAACCTTTTAATAAAGTTAGCCTTGTTAATGGGGTCAAGcttgagttt
ttacaagttctttgatgactctgttggtcgttaaatgttgagacaaacga
ttttattactttttctaaagaacgcgtt
Run BLAST on NCBI

protein sequence of TCONS_00057396-protein

>TCONS_00057396-protein ID=TCONS_00057396-protein|Name=TCONS_00057396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
ITFVDDRDVDLLDVPAIRFCPDPAEVFKDVFVCRWCKETFSSNTIMNNHS
KKCFQNPARRTKQGHKIVLNETELKPLEKEAGSHFTIALELAINDKILNL
KHGEELTPGNHAAKSAKFILEKSDLVSNEMNTFATHIQSLLIPSVNTDFC
SEARQIGCTKFSAVTISKSGRSKFATIFDKLLMNKDGFDVLYTFIVTKTF
SLILKWKNDQLIEPSKIDYTRVSFTSEEEKVLRYVAGFIPFSLKKRFSRV
KESELKKAALQIVDNWCLDGDEKDATDFYDYTLSWTNRINRGGLMIVKEP
FYVFIRRIETYVREVLNVTLIENYNGEDLRDIILSKLLKSMSIESTWASL
SRMVVSEKLKMTLKEIILKKWVNLRVRSFVTAWIQVAKLRHTEDKLSKKA
EVGLRKGLSA
Run BLAST on NCBI

transcript from alignment at scaffold_288:678139..679989-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057396 ID=TCONS_00057396|Name=TCONS_00057396|organism=Clytia hemisphaerica|type=transcript|length=1851bp|location=Sequence derived from alignment at scaffold_288:678139..679989- (Clytia hemisphaerica)
ATAACCTTTGTAGATGACAGAGATGTAGATTTACTTGACGTTCCTGCGAT
TCGGTTCTGTCCAGACCCTGCTGAAGTTTTCAAAGATGTTTTTGTATGCA
GATGGTGTAAGGAGACGTTCAGTAGCAACACAATTATGAACAATCACTCA
AAGAAATGCTTTCAAAATCCAGCTAGGCGAACAAAGCAAGGACATAAAAT
TGGTAATTTCAGAATCCAATTAATTTTTTTTTCTTTTTAAAGTTTGTTTT
GGCACAGTCTGATCTGGACCTCTTAGAGGACATACACACACACAGTTGAC
AAATGTTTTTGAGTGATGCACACTCAATGTATCAAGTTTTATTTTCTACA
AATATTTGCTGACCATTTGTAGTACCCTTTTAGCTTCTCTGGTCTTCCCA
CATCCTACCTTAACACAACAACAGTACAAAGTAATATTATGCTTGTCTTA
TGATTACTCTTTACCTCTTTTATAGTGCTTAATGAAACCGAGCTGAAACC
ATTGGAAAAAGAAGCAGGGAGCCACTTCACAATCGCACTAGAGTTAGCCA
TCAATGACAAGATCCTCAATCTCAAACATGGAGAAGAGCTGACTCCAGGA
AATCATGCTGCAAAATCTGCTAAATTCATTCTAGAAAAATCAGACCTCGT
GTCAAATGAAATGAACACATTTGCAACACATATTCAATCACTCTTGATTC
CATCTGTCAATACAGACTTTTGCTCAGAAGCTAGGCAAATCGGTTGCACA
AAATTTTCAGCAGTAACTATTAGTAAATCTGGAAGAAGCAAGTTTGCCAC
AATTTTTGATAAGTTGCTTATGAATAAAGATGGATTTGATGTTCTTTACA
CCTTCATTGTCACAAAAACCTTTTCCTTGATCCTCAAATGGAAAAATGAT
CAGCTTATTGAACCCTCCAAGATTGATTACACCAGAGTGAGCTTCACGTC
CGAAGAGGAAAAAGTACTCCGATATGTTGCTGGTTTTATTCCTTTTTCCC
TTAAAAAAAGGTTTTCTCGTGTCAAAGAATCTGAACTTAAGAAGGCTGCT
CTACAGATAGTTGATAATTGGTGTCTTGATGGAGATGAAAAGGATGCAAC
CGATTTTTATGATTACACGTTATCATGGACAAACCGAATAAATAGAGGAG
GACTAATGATTGTTAAAGAACCATTTTATGTTTTCATTAGACGTATTGAA
ACTTATGTACGGGAAGTTTTAAATGTCACCCTGATTGAAAACTACAATGG
AGAGGACTTGAGGGATATCATTTTAAGCAAGCTTTTAAAAAGCATGAGCA
TCGAGAGCACATGGGCCTCATTGAGTAGAATGGTTGTATCTGAAAAACTT
AAAATGACTTTAAAAGAAATCATTTTAAAGAAATGGGTGAATTTGCGCGT
ACGTTCCTTTGTAACAGCCTGGATTCAAGTTGCTAAATTACGCCATACTG
AAGATAAACTATCAAAAAAAGCCGAAGTCGGTTTGAGGAAAGGTCTCAGT
GCCTAATTTTTTTTATTTTATATATATTTTTTACAATGTTTTTTTGAAAC
AGGCAGAAGCAAATGTCTTTTTGTTGCTTTTATTTATATATATCATTAAT
ACTTACATGGGCTTTATATTCTTGTTTCGACAAAGATTCCATTTCATCAC
CTCCTTGCAATTTGAAATTTCTTTACTGAGGGGCACAAATGAGAACCAGG
TGCTTAGTTTCCAGATGTGGGATGATAACCTTTTAATAAAGTTAGCCTTG
TTAATGGGGTCAAGCTTGAGTTTTTACAAGTTCTTTGATGACTCTGTTGG
TCGTTAAATGTTGAGACAAACGATTTTATTACTTTTTCTAAAGAACGCGT
T

Coding sequence (CDS) from alignment at scaffold_288:678139..679989-

>TCONS_00057396 ID=TCONS_00057396|Name=TCONS_00057396|organism=Clytia hemisphaerica|type=CDS|length=2466bp|location=Sequence derived from alignment at scaffold_288:678139..679989- (Clytia hemisphaerica)
TGCTTAATGAAACCGAGCTGAAACCATTGGAAAAAGAAGCAGGGAGCCAC
TTCACAATCGCACTAGAGTTAGCCATCAATGACAAGATCCTCAATCTCAA
ACATGGAGAAGAGCTGACTCCAGGAAATCATGCTGCAAAATCTGCTAAAT
TCATTCTAGAAAAATCAGACCTCGTGTCAAATGAAATGAACACATTTGCA
ACACATATTCAATCACTCTTGATTCCATCTGTCAATACAGACTTTTGCTC
AGAAGCTAGGCAAATCGGTTGCACAAAATTTTCAGCAGTAACTATTAGTA
AATCTGGAAGAAGCAAGTTTGCCACAATTTTTGATAAGTTGCTTATGAAT
AAAGATGGATTTGATGTTCTTTACACCTTCATTGTCACAAAAACCTTTTC
CTTGATCCTCAAATGGAAAAATGATCAGCTTATTGAACCCTCCAAGATTG
ATTACACCAGAGTGAGCTTCACGTCCGAAGAGGAAAAAGTACTCCGATAT
GTTGCTGGTTTTATTCCTTTTTCCCTTAAAAAAAGGTTTTCTCGTGTCAA
AGAATCTGAACTTAAGAAGGCTGCTCTACAGATAGTTGATAATTGGTGTC
TTGATGGAGATGAAAAGGATGCAACCGATTTTTATGATTACACGTTATCA
TGGACAAACCGAATAAATAGAGGAGGACTAATGATTGTTAAAGAACCATT
TTATGTTTTCATTAGACGTATTGAAACTTATGTACGGGAAGTTTTAAATG
TCACCCTGATTGAAAACTACAATGGAGAGGACTTGAGGGATATCATTTTA
AGCAAGCTTTTAAAAAGCATGAGCATCGAGAGCACATGGGCCTCATTGAG
TAGAATGGTTGTATCTGAAAAACTTAAAATGACTTTAAAAGAAATCATTT
TAAAGAAATGGGTGAATTTGCGCGTACGTTCCTTTGTAACAGCCTGGATT
CAAGTTGCTAAATTACGCCATACTGAAGATAAACTATCAAAAAAAGCCGA
AGTCGGTTTGAGGAAAGGTCTCAGTGCCTAAATAACCTTTGTAGATGACA
GAGATGTAGATTTACTTGACGTTCCTGCGATTCGGTTCTGTCCAGACCCT
GCTGAAGTTTTCAAAGATGTTTTTGTATGCAGATGGTGTAAGGAGACGTT
CAGTAGCAACACAATTATGAACAATCACTCAAAGAAATGCTTTCAAAATC
CAGCTAGGCGAACAAAGCAAGGACATAAAATTGTGCTTAATGAAACCGAG
CTGAAACCATTGGAAAAAGAAGCAGGGAGCCACTTCACAATCGCACTAGA
GTTAGCCATCAATGACAAGATCCTCAATCTCAAACATGGAGAAGAGCTGA
CTCCAGGAAATCATGCTGCAAAATCTGCTAAATTCATTCTAGAAAAATCA
GACCTCGTGTCAAATGAAATGAACACATTTGCAACACATATTCAATCACT
CTTGATTCCATCTGTCAATACAGACTTTTGCTCAGAAGCTAGGCAAATCG
GTTGCACAAAATTTTCAGCAGTAACTATTAGTAAATCTGGAAGAAGCAAG
TTTGCCACAATTTTTGATAAGTTGCTTATGAATAAAGATGGATTTGATGT
TCTTTACACCTTCATTGTCACAAAAACCTTTTCCTTGATCCTCAAATGGA
AAAATGATCAGCTTATTGAACCCTCCAAGATTGATTACACCAGAGTGAGC
TTCACGTCCGAAGAGGAAAAAGTACTCCGATATGTTGCTGGTTTTATTCC
TTTTTCCCTTAAAAAAAGGTTTTCTCGTGTCAAAGAATCTGAACTTAAGA
AGGCTGCTCTACAGATAGTTGATAATTGGTGTCTTGATGGAGATGAAAAG
GATGCAACCGATTTTTATGATTACACGTTATCATGGACAAACCGAATAAA
TAGAGGAGGACTAATGATTGTTAAAGAACCATTTTATGTTTTCATTAGAC
GTATTGAAACTTATGTACGGGAAGTTTTAAATGTCACCCTGATTGAAAAC
TACAATGGAGAGGACTTGAGGGATATCATTTTAAGCAAGCTTTTAAAAAG
CATGAGCATCGAGAGCACATGGGCCTCATTGAGTAGAATGGTTGTATCTG
AAAAACTTAAAATGACTTTAAAAGAAATCATTTTAAAGAAATGGGTGAAT
TTGCGCGTACGTTCCTTTGTAACAGCCTGGATTCAAGTTGCTAAATTACG
CCATACTGAAGATAAACTATCAAAAAAAGCCGAAGTCGGTTTGAGGAAAG
GTCTCAGTGCCTAAATAACCTTTGTAGATGACAGAGATGTAGATTTACTT
GACGTTCCTGCGATTCGGTTCTGTCCAGACCCTGCTGAAGTTTTCAAAGA
TGTTTTTGTATGCAGATGGTGTAAGGAGACGTTCAGTAGCAACACAATTA
TGAACAATCACTCAAAGAAATGCTTTCAAAATCCAGCTAGGCGAACAAAG
CAAGGACATAAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036157XLOC_036157Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057396-proteinTCONS_00057396-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057396-exon-scaffold_288-1575043694:679788..679989TCONS_00057396-exon-scaffold_288-1575043694:679788..679989Clytia hemisphaericaexon
TCONS_00057396-exon-scaffold_288-1575043694:678139..679514TCONS_00057396-exon-scaffold_288-1575043694:678139..679514Clytia hemisphaericaexon
TCONS_00057396-exon-scaffold_288-1510915933:679788..679989TCONS_00057396-exon-scaffold_288-1510915933:679788..679989Clytia hemisphaericaexon
TCONS_00057396-exon-scaffold_288-1510915933:678139..679514TCONS_00057396-exon-scaffold_288-1510915933:678139..679514Clytia hemisphaericaexon
TCONS_00057396-exon-scaffold_288-1491911889:679788..679989TCONS_00057396-exon-scaffold_288-1491911889:679788..679989Clytia hemisphaericaexon
TCONS_00057396-exon-scaffold_288-1491911889:678139..679514TCONS_00057396-exon-scaffold_288-1491911889:678139..679514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:678139..679989 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0768241	0	0	0.425399	0.362559	1.07183	1.61957	0.358292	0.30568	0.484468	0.532213	0.193031	0.073156	0.778503	0.70557	0.397049	0.163292	0.0838922	0.589818	0.386691	0.569938	0.421207	0.519562	0.562535	0.101093	0.0730721	0.311867	1.47801	1.61606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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