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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057404 ID=TCONS_00057404|Name=TCONS_00057404|organism=Clytia hemisphaerica|type=transcript|length=853bp
ATCCTTTAGTGAAAGGAGCTTCCGATGTTGTATCCGGATCGGTGAATTAT
CCTGACAACCATTGGAGTTCTGGATGTTATCAATCGAAACTGATCTGGAG
CCAATACAAAACTGTATCCGGTCACGATGTGGCGAATCAACACCAAAGAG
TTTTGTGCGATTATTTGAATGGACCCTTTGCAATAGACAGAGGCGTTCTG
TTGGGTCATTTGGAAGCTAAAGCTAAGACAAAATGTCCAGACGTTTTAGT
TTATCCGGAAATCATATCGACAATGAGTAAGCAAttgaaaattatgacgt
cacacctCTCAAGTGTTTTCGATATGGAGCCATGGCGTGATTTAGAGAAT
CTAAGTCGCAATGATTGGCTTGGATTCGCTACAAGAAATGGTATCTCGGA
ATTTTACGATGATACTCTCGATAAACATTTTGAATTCACTGATATCGAGG
TTAAAGTGAAATGTGAAAAGAAGAATAAGAAAACTAACACTATGCTTGAA
CAAAGAGCTTGTATGAGGGACCTGCATTTCATGTTTATCGATACATTAAA
GCTCTTCGATAAGTTAGGTTACCATTTTAACATCGAGGCCGGTTCAGGTC
TGGGGGCTGTCAAACTGCAAGATAGTCTACCGTTGGATATAGATCAAGAC
CTATTATTCTGCAGTCAAAATTTCACGTCCCTTGAGAAACATGAAATGGA
ATGGAAAAAACTCGGCATGGCTTTTGATAAACAGCTAAACACAACGCCAA
AATGCACGAGAAATGTTAATCTGTTTAAAGAAGTTACTTGTGACTACATT
ggaatttataaaaagaaatggAATATAGAGTCTTTAGGCACGACCATTCT
CCC Run BLAST on NCBI protein sequence of TCONS_00057404-protein >TCONS_00057404-protein ID=TCONS_00057404-protein|Name=TCONS_00057404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
PLVKGASDVVSGSVNYPDNHWSSGCYQSKLIWSQYKTVSGHDVANQHQRV
LCDYLNGPFAIDRGVLLGHLEAKAKTKCPDVLVYPEIISTMSKQLKIMTS
HLSSVFDMEPWRDLENLSRNDWLGFATRNGISEFYDDTLDKHFEFTDIEV
KVKCEKKNKKTNTMLEQRACMRDLHFMFIDTLKLFDKLGYHFNIEAGSGL
GAVKLQDSLPLDIDQDLLFCSQNFTSLEKHEMEWKKLGMAFDKQLNTTPK
CTRNVNLFKEVTCDYIGIYKKKWNIESLGTTIL Run BLAST on NCBI transcript from alignment at scaffold_288:16877..17729 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057404 ID=TCONS_00057404|Name=TCONS_00057404|organism=Clytia hemisphaerica|type=transcript|length=853bp|location=Sequence derived from alignment at scaffold_288:16877..17729 (Clytia hemisphaerica)
GGGAGAATGGTCGTGCCTAAAGACTCTATATTccatttctttttataaat
tccAATGTAGTCACAAGTAACTTCTTTAAACAGATTAACATTTCTCGTGC
ATTTTGGCGTTGTGTTTAGCTGTTTATCAAAAGCCATGCCGAGTTTTTTC
CATTCCATTTCATGTTTCTCAAGGGACGTGAAATTTTGACTGCAGAATAA
TAGGTCTTGATCTATATCCAACGGTAGACTATCTTGCAGTTTGACAGCCC
CCAGACCTGAACCGGCCTCGATGTTAAAATGGTAACCTAACTTATCGAAG
AGCTTTAATGTATCGATAAACATGAAATGCAGGTCCCTCATACAAGCTCT
TTGTTCAAGCATAGTGTTAGTTTTCTTATTCTTCTTTTCACATTTCACTT
TAACCTCGATATCAGTGAATTCAAAATGTTTATCGAGAGTATCATCGTAA
AATTCCGAGATACCATTTCTTGTAGCGAATCCAAGCCAATCATTGCGACT
TAGATTCTCTAAATCACGCCATGGCTCCATATCGAAAACACTTGAGaggt
gtgacgtcataattttcaaTTGCTTACTCATTGTCGATATGATTTCCGGA
TAAACTAAAACGTCTGGACATTTTGTCTTAGCTTTAGCTTCCAAATGACC
CAACAGAACGCCTCTGTCTATTGCAAAGGGTCCATTCAAATAATCGCACA
AAACTCTTTGGTGTTGATTCGCCACATCGTGACCGGATACAGTTTTGTAT
TGGCTCCAGATCAGTTTCGATTGATAACATCCAGAACTCCAATGGTTGTC
AGGATAATTCACCGATCCGGATACAACATCGGAAGCTCCTTTCACTAAAG
GAT Coding sequence (CDS) from alignment at scaffold_288:16877..17729 >TCONS_00057404 ID=TCONS_00057404|Name=TCONS_00057404|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at scaffold_288:16877..17729 (Clytia hemisphaerica)
GAGAATGGTCGTGCCTAAAGACTCTATATTccatttctttttataaattc
cAATGTAGTCACAAGTAACTTCTTTAAACAGATTAACATTTCTCGTGCAT
TTTGGCGTTGTGTTTAGCTGTTTATCAAAAGCCATGCCGAGTTTTTTCCA
TTCCATTTCATGTTTCTCAAGGGACGTGAAATTTTGACTGCAGAATAATA
GGTCTTGATCTATATCCAACGGTAGACTATCTTGCAGTTTGACAGCCCCC
AGACCTGAACCGGCCTCGATGTTAAAATGGTAACCTAACTTATCGAAGAG
CTTTAATGTATCGATAAACATGAAATGCAGGTCCCTCATACAAGCTCTTT
GTTCAAGCATAGTGTTAGTTTTCTTATTCTTCTTTTCACATTTCACTTTA
ACCTCGATATCAGTGAATTCAAAATGTTTATCGAGAGTATCATCGTAAAA
TTCCGAGATACCATTTCTTGTAGCGAATCCAAGCCAATCATTGCGACTTA
GATTCTCTAAATCACGCCATGGCTCCATATCGAAAACACTTGAGaggtgt
gacgtcataattttcaaTTGCTTACTCATTGTCGATATGATTTCCGGATA
AACTAAAACGTCTGGACATTTTGTCTTAGCTTTAGCTTCCAAATGACCCA
ACAGAACGCCTCTGTCTATTGCAAAGGGTCCATTCAAATAATCGCACAAA
ACTCTTTGGTGTTGATTCGCCACATCGTGACCGGATACAGTTTTGTATTG
GCTCCAGATCAGTTTCGATTGATAACATCCAGAACTCCAATGGTTGTCAG
GATAATTCACCGATCCGGATACAACATCGGAAGCTCCTTTCACTAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057404-exon-scaffold_288-1491911889:16877..17729 | TCONS_00057404-exon-scaffold_288-1491911889:16877..17729 | Clytia hemisphaerica | exon |
| TCONS_00057404-exon-scaffold_288-1510915933:16877..17729 | TCONS_00057404-exon-scaffold_288-1510915933:16877..17729 | Clytia hemisphaerica | exon |
| TCONS_00057404-exon-scaffold_288-1575043694:16877..17729 | TCONS_00057404-exon-scaffold_288-1575043694:16877..17729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:16877..17729 . |
Blast
The following BLAST results are available for this feature:
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