TCONS_00057410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057410
Unique NameTCONS_00057410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057410 ID=TCONS_00057410|Name=TCONS_00057410|organism=Clytia hemisphaerica|type=transcript|length=741bp
CNTTGATTATCTAAAAAACacagttttcatttttaaaacactTGATTATC
TTGACACCTTTGCATCTTCCAAATAACGGATAAACTCGGACTGTTTCGAA
TACTCAACTTTTGTACGGATTCCTGTGCATTCCTAGCATTTGCAGCTTTT
GGCATAAAAATGTCAATTCTCATAACAAAACAACTTATCTTTCTGCAACT
ATTGCAAAATCTgcctcaaaaattttaaattctctCCCAAATGACATCAT
ACACACTCTCGTAAATGTACGCTTCACTCACTCCAATAGTAATCCGTAAA
TAAACTACGTGATCACGTAAATAACATCTCACACTTTCGCAATTAGGCTA
CGCGCTCACTCAAATAATATCTCACACTCTCGCAAATAGGCTACGCGCTC
ACGAAAATAACATCTCACACTCTCGCAAACAGTCTACGCGCTCACTTAAT
TAACATATCAAACTCTCGCAAATAGACTATGCGCTCACTTAATTAACATC
TCAAACTCTCGCAAATAGGCTACGTGCTCACGCAATTAATATCTCACACT
CTCGCAAATGGGCTACGCGCTCACGCAAATAATATCTCACACTCTCAAAT
AGGCTACGCGCTCACGCAAATAATATCTCACACTCTCGCANAATAGGCTA
CGCGCTTACGCAATTAATATCTCACACTCTCGCAAATGGGCTACGCGCTC
ACGCAAATAATATCTCACACTCTCAAATGGGCTACGCGCTC
Run BLAST on NCBI

transcript from alignment at scaffold_288:28826..29566

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057410 ID=TCONS_00057410|Name=TCONS_00057410|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at scaffold_288:28826..29566 (Clytia hemisphaerica)
GAGCGCGTAGCCCATTTGAGAGTGTGAGATATTATTTGCGTGAGCGCGTA
GCCCATTTGCGAGAGTGTGAGATATTAATTGCGTAAGCGCGTAGCCTATT
NTGCGAGAGTGTGAGATATTATTTGCGTGAGCGCGTAGCCTATTTGAGAG
TGTGAGATATTATTTGCGTGAGCGCGTAGCCCATTTGCGAGAGTGTGAGA
TATTAATTGCGTGAGCACGTAGCCTATTTGCGAGAGTTTGAGATGTTAAT
TAAGTGAGCGCATAGTCTATTTGCGAGAGTTTGATATGTTAATTAAGTGA
GCGCGTAGACTGTTTGCGAGAGTGTGAGATGTTATTTTCGTGAGCGCGTA
GCCTATTTGCGAGAGTGTGAGATATTATTTGAGTGAGCGCGTAGCCTAAT
TGCGAAAGTGTGAGATGTTATTTACGTGATCACGTAGTTTATTTACGGAT
TACTATTGGAGTGAGTGAAGCGTACATTTACGAGAGTGTGTATGATGTCA
TTTGGGagagaatttaaaatttttgaggcAGATTTTGCAATAGTTGCAGA
AAGATAAGTTGTTTTGTTATGAGAATTGACATTTTTATGCCAAAAGCTGC
AAATGCTAGGAATGCACAGGAATCCGTACAAAAGTTGAGTATTCGAAACA
GTCCGAGTTTATCCGTTATTTGGAAGATGCAAAGGTGTCAAGATAATCAa
gtgttttaaaaatgaaaactgtGTTTTTTAGATAATCAANG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036169XLOC_036169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057410-exon-scaffold_288-1491911889:28826..29566TCONS_00057410-exon-scaffold_288-1491911889:28826..29566Clytia hemisphaericaexon
TCONS_00057410-exon-scaffold_288-1510915933:28826..29566TCONS_00057410-exon-scaffold_288-1510915933:28826..29566Clytia hemisphaericaexon
TCONS_00057410-exon-scaffold_288-1575043694:28826..29566TCONS_00057410-exon-scaffold_288-1575043694:28826..29566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:28826..29566 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200062	0.260123	0.151014	0.369359	0.629523	0.426392	3.22937	3.96296	0.0561963	0.0696081	0.564613	0.306902	1.14045	0.758121	0.211713	0.840085	1.30161	1.26188	0.103995	0	0.386863	0.471746	0.30585	0.46758	0.859193	1.40582	0.23115	0.360821	0.0740179	0.0754125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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