TCONS_00057411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057411
Unique NameTCONS_00057411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length999

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057411 ID=TCONS_00057411|Name=TCONS_00057411|organism=Clytia hemisphaerica|type=transcript|length=999bp
GTCCTTTCTGTTAGCTCCACCTTTGTGCTTCAAAAACTGCAAGTAATCgt
aattattattatatttataGGCAATGACTGCTCTGTATTTACttatgttg
tttttcttttattgttcagGTAACCGACGAAACGAAAGCAACGACTAATG
TCCATTTTCGTTGGAGTGTGGTGCAGTCATATAAATCGCCTAATTATGTG
GGCCCCAACCTCGCTGCAGACCCCAGTGAACAGCATTATAAAACTAAGAC
CATGATGATAGAGTTAGAAATTGAAAAGTTAGAATGGTTCTCATTTTCTG
GTTCCTTAACGACGATCATGTTCAGGCTTTCTTTTCGAGTTGTtttattt
tctcctttcttttccTTAGCTTTAGCTTTATTAGCATTCTTTTGTTCTGT
TCTACGATTGAAGTCTACAATGAGGTTTGGGTCTAAAATATTTTCGCTTG
GCTCCCAAGTAGCCTGCGACAAGGGATACCCTTGCCGTTTCACAAGATAA
CTCGTGATTCCAGATCGCTTTCTGGATTTCAGAATTCTTTCCACCCTATA
AATCTGGTCTTCCTGTTCGATTTCAACTGTCGGATCTAAGACGTGCGGCA
TAGAATCTAAGGGGATACAATCTAACGGGACGTTGCAAAATTCGTCCCCT
CTTTCGACNGGACGTGCGGCATCTAAGGGGATGCAATCTAACGGGACGTT
GCAAAATTCGTCCCTCTTTCGACCTCTTCGTCCGGTCTTTCCCTGGTAGG
CCAACGTCCAAGATTCAGAAAAGGTCTTAAAAATGGTTTTAGGTTTAAAC
TCCCAAAAATTCGGTGAAAACTAGGTGCTGTAGGAGAATTCGTTTAACTA
ATTCGCTTCTTTCAGTCAATAAAAACGTTAACGGGTCCAAAATGCATTCA
AAAACCGACTTGTACCATAGAATGAAATATCTTTTCACAAGTTCAAAATA
ATCATACTTATATACACACTTGATCATCGCTTGGTTTTCTTTTATCATC
Run BLAST on NCBI

protein sequence of TCONS_00057411-protein

>TCONS_00057411-protein ID=TCONS_00057411-protein|Name=TCONS_00057411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MPHVLDPTVEIEQEDQIYRVERILKSRKRSGITSYLVKRQGYPLSQATWE
PSENILDPNLIVDFNRRTEQKNANKAKAKEKKGENKTTRKESLNMIVVKE
PENENHSNFSISNSIIMVLVL
Run BLAST on NCBI

transcript from alignment at scaffold_288:29713..30711

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057411 ID=TCONS_00057411|Name=TCONS_00057411|organism=Clytia hemisphaerica|type=transcript|length=999bp|location=Sequence derived from alignment at scaffold_288:29713..30711 (Clytia hemisphaerica)
GATGATAAAAGAAAACCAAGCGATGATCAAGTGTGTATATAAGTATGATT
ATTTTGAACTTGTGAAAAGATATTTCATTCTATGGTACAAGTCGGTTTTT
GAATGCATTTTGGACCCGTTAACGTTTTTATTGACTGAAAGAAGCGAATT
AGTTAAACGAATTCTCCTACAGCACCTAGTTTTCACCGAATTTTTGGGAG
TTTAAACCTAAAACCATTTTTAAGACCTTTTCTGAATCTTGGACGTTGGC
CTACCAGGGAAAGACCGGACGAAGAGGTCGAAAGAGGGACGAATTTTGCA
ACGTCCCGTTAGATTGCATCCCCTTAGATGCCGCACGTCCNGTCGAAAGA
GGGGACGAATTTTGCAACGTCCCGTTAGATTGTATCCCCTTAGATTCTAT
GCCGCACGTCTTAGATCCGACAGTTGAAATCGAACAGGAAGACCAGATTT
ATAGGGTGGAAAGAATTCTGAAATCCAGAAAGCGATCTGGAATCACGAGT
TATCTTGTGAAACGGCAAGGGTATCCCTTGTCGCAGGCTACTTGGGAGCC
AAGCGAAAATATTTTAGACCCAAACCTCATTGTAGACTTCAATCGTAGAA
CAGAACAAAAGAATGCTAATAAAGCTAAAGCTAAggaaaagaaaggagaa
aataaaACAACTCGAAAAGAAAGCCTGAACATGATCGTCGTTAAGGAACC
AGAAAATGAGAACCATTCTAACTTTTCAATTTCTAACTCTATCATCATGG
TCTTAGTTTTATAATGCTGTTCACTGGGGTCTGCAGCGAGGTTGGGGCCC
ACATAATTAGGCGATTTATATGACTGCACCACACTCCAACGAAAATGGAC
ATTAGTCGTTGCTTTCGTTTCGTCGGTTACctgaacaataaaagaaaaac
aacataaGTAAATACAGAGCAGTCATTGCCtataaatataataataatta
cGATTACTTGCAGTTTTTGAAGCACAAAGGTGGAGCTAACAGAAAGGAC

Coding sequence (CDS) from alignment at scaffold_288:29713..30711

>TCONS_00057411 ID=TCONS_00057411|Name=TCONS_00057411|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_288:29713..30711 (Clytia hemisphaerica)
ATGCCGCACGTCTTAGATCCGACAGTTGAAATCGAACAGGAAGACCAGAT
TTATAGGGTGGAAAGAATTCTGAAATCCAGAAAGCGATCTGGAATCACGA
GTTATCTTGTGAAACGGCAAGGGTATCCCTTGTCGCAGGCTACTTGGGAG
CCAAGCGAAAATATTTTAGACCCAAACCTCATTGTAGACTTCAATCGTAG
AACAGAACAAAAGAATGCTAATAAAGCTAAAGCTAAggaaaagaaaggag
aaaataaaACAACTCGAAAAGAAAGCCTGAACATGATCGTCGTTAAGGAA
CCAGAAAATGAGAACCATTCTAACTTTTCAATTTCTAACTCTATCATCAT
GGTCTTAGTTTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036170XLOC_036170Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057411-proteinTCONS_00057411-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057411-exon-scaffold_288-1491911889:29713..30711TCONS_00057411-exon-scaffold_288-1491911889:29713..30711Clytia hemisphaericaexon
TCONS_00057411-exon-scaffold_288-1510915933:29713..30711TCONS_00057411-exon-scaffold_288-1510915933:29713..30711Clytia hemisphaericaexon
TCONS_00057411-exon-scaffold_288-1575043694:29713..30711TCONS_00057411-exon-scaffold_288-1575043694:29713..30711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:29713..30711 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0493805	0	0	0	0.191844	0.0490575	0.485238	1.22274	0.0756871	0.0468754	0.201997	0.0901475	0.357551	0.365994	0.0355648	0.171658	0.101721	0.241881	0	0	0.282203	0.0635364	0.135702	0.093626	0.626812	0.946702	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR023780Chromo_domain
IPR016197Chromodomain-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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