TCONS_00057415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057415
Unique NameTCONS_00057415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057415 ID=TCONS_00057415|Name=TCONS_00057415|organism=Clytia hemisphaerica|type=transcript|length=229bp
atgtgtagatacgGTAAATGCTTAACATAAAGAGTTATGCGCATGCGTAA
TGTTAACACCACATGTAGTTAAATAGCGTGATGAACAAAAAGGAATGAAT
cgctaggggtggtacagtcactttttggtcggggttgtggaGGGCAAAAT
ATGTCgtttcgttctttgatagttagggttagggtttgaaatatgtcgtt
ctttggaTAGTTAGGGTTAAGGTTTGTCA
Run BLAST on NCBI

transcript from alignment at scaffold_288:68272..68500

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057415 ID=TCONS_00057415|Name=TCONS_00057415|organism=Clytia hemisphaerica|type=transcript|length=229bp|location=Sequence derived from alignment at scaffold_288:68272..68500 (Clytia hemisphaerica)
TGACAAACCTTAACCCTAACTAtccaaagaacgacatatttcaaacccta
accctaactatcaaagaacgaaacGACATATTTTGCCCtccacaaccccg
accaaaaagtgactgtaccacccctagcgATTCATTCCTTTTTGTTCATC
ACGCTATTTAACTACATGTGGTGTTAACATTACGCATGCGCATAACTCTT
TATGTTAAGCATTTACcgtatctacacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036174XLOC_036174Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057415-exon-scaffold_288-1491911889:68272..68500TCONS_00057415-exon-scaffold_288-1491911889:68272..68500Clytia hemisphaericaexon
TCONS_00057415-exon-scaffold_288-1510915933:68272..68500TCONS_00057415-exon-scaffold_288-1510915933:68272..68500Clytia hemisphaericaexon
TCONS_00057415-exon-scaffold_288-1575043694:68272..68500TCONS_00057415-exon-scaffold_288-1575043694:68272..68500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:68272..68500 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.21521	1.1889	1.44737	4.57492	1.37986	0	5.42656	2.24056	1.08737	2.14438	0	2.96515	4.26608	1.96207	4.83421	0	1.14091	4.77553	4.03979	1.51846	0	0	1.15233	2.05685	1.47167	1.57061	0	1.21369
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top