TCONS_00057423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057423
Unique NameTCONS_00057423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057423 ID=TCONS_00057423|Name=TCONS_00057423|organism=Clytia hemisphaerica|type=transcript|length=430bp
TTTAagatctcaaaatatttttacgtTTTCAGATTTTGTGATCGTGAAAC
ATACAAGCAAGACTACCATGGTAACGCCCACCACCCATTCACCAACCAAA
TGGCGCCCGCAAACAAAACCATCATGGTGGATACCACTCCCTTGTAAATT
ATGTTTAGGATGGGTTTCCAGAAGAAATGCAACAATCCGCAGGATTTGTA
AACATGGTTGTGGAGATGGTTCCCCAATGTTGAAGACAGCTTTACCTATG
TTGACGTCGAGTACAAATGTTCCAGCAGCTCCCCGTACAACAGATGCTGA
CATTATAACACAAAAACAATGGAATATAAATTCCACAGAAAATCCACCCA
ATTGTTCAGTATGCTCCAGTTGGGAAATTAAAAGAAACACGTCGATTCGT
TTAACGTGTGAGGAACATTGTCGTTACGGA
Run BLAST on NCBI

protein sequence of TCONS_00057423-protein

>TCONS_00057423-protein ID=TCONS_00057423-protein|Name=TCONS_00057423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
LRSQNIFTFSDFVIVKHTSKTTMVTPTTHSPTKWRPQTKPSWWIPLPCKL
CLGWVSRRNATIRRICKHGCGDGSPMLKTALPMLTSSTNVPAAPRTTDAD
IITQKQWNINSTENPPNCSVCSSWEIKRNTSIRLTCEEHCRYG
Run BLAST on NCBI

transcript from alignment at scaffold_288:220309..220738

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057423 ID=TCONS_00057423|Name=TCONS_00057423|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at scaffold_288:220309..220738 (Clytia hemisphaerica)
TCCGTAACGACAATGTTCCTCACACGTTAAACGAATCGACGTGTTTCTTT
TAATTTCCCAACTGGAGCATACTGAACAATTGGGTGGATTTTCTGTGGAA
TTTATATTCCATTGTTTTTGTGTTATAATGTCAGCATCTGTTGTACGGGG
AGCTGCTGGAACATTTGTACTCGACGTCAACATAGGTAAAGCTGTCTTCA
ACATTGGGGAACCATCTCCACAACCATGTTTACAAATCCTGCGGATTGTT
GCATTTCTTCTGGAAACCCATCCTAAACATAATTTACAAGGGAGTGGTAT
CCACCATGATGGTTTTGTTTGCGGGCGCCATTTGGTTGGTGAATGGGTGG
TGGGCGTTACCATGGTAGTCTTGCTTGTATGTTTCACGATCACAAAATCT
GAAAacgtaaaaatattttgagatctTAAA

Coding sequence (CDS) from alignment at scaffold_288:220309..220738

>TCONS_00057423 ID=TCONS_00057423|Name=TCONS_00057423|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_288:220309..220738 (Clytia hemisphaerica)
TCCGTAACGACAATGTTCCTCACACGTTAAACGAATCGACGTGTTTCTTT
TAATTTCCCAACTGGAGCATACTGAACAATTGGGTGGATTTTCTGTGGAA
TTTATATTCCATTGTTTTTGTGTTATAATGTCAGCATCTGTTGTACGGGG
AGCTGCTGGAACATTTGTACTCGACGTCAACATAGGTAAAGCTGTCTTCA
ACATTGGGGAACCATCTCCACAACCATGTTTACAAATCCTGCGGATTGTT
GCATTTCTTCTGGAAACCCATCCTAAACATAATTTACAAGGGAGTGGTAT
CCACCATGATGGTTTTGTTTGCGGGCGCCATTTGGTTGGTGAATGGGTGG
TGGGCGTTACCATGGTAGTCTTGCTTGTATGTTTCACGATCACAAAATCT
GAAAacgtaaaaatattttgagatctTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036182XLOC_036182Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057423-exon-scaffold_288-1491911889:220309..220738TCONS_00057423-exon-scaffold_288-1491911889:220309..220738Clytia hemisphaericaexon
TCONS_00057423-exon-scaffold_288-1510915933:220309..220738TCONS_00057423-exon-scaffold_288-1510915933:220309..220738Clytia hemisphaericaexon
TCONS_00057423-exon-scaffold_288-1575043694:220309..220738TCONS_00057423-exon-scaffold_288-1575043694:220309..220738Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057423-proteinTCONS_00057423-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:220309..220738 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.216487	0	0	0.19322	0.270556	0.670254	0.325282	0.53457	0.350009	0.251391	0.182312	0.293472	0.361534	0.617601	0.520504	0.209856	2.22239	2.81574	1.35577	1.44107	1.89593	1.2306	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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