TCONS_00057424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057424
Unique NameTCONS_00057424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length775

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057424 ID=TCONS_00057424|Name=TCONS_00057424|organism=Clytia hemisphaerica|type=transcript|length=775bp
CAAAATTTGTGAATTGCcaattgttttgaaatgaacttTAGTTAATTATA
CTTTACTGGTGGTACTAGTGGTTAGATGTTAAAACGGTGTGACTAATGAG
GATAGCTAGGACTGCATACATTGGTGTTACAGTGAAGTCTCCATAACCCG
AATACGCACagagaacacaaatttgttcgaaataTGGAAGTATATTGAGC
TATGGAGTAAGGTTAATAgggcattgttaactaaaggaacCATAAAACTT
CTtaattcgagttaaggagatattcgtgctatagaggtttgagttagact
ccactgtattatGACGAATTCTAAAAGTGTGCACTTAAGTAGGTGCAGAT
TAAGTGAAGTAGGGCCACCACAAAGTAGCTTTGATGTCTTCTTTGCAAGA
AAATTCTTTGGCTTAAGACAAACAAACATATCAGACGAGTTTTGCATCAA
ATGCTCATCTAGAAGATGGATGACGATAACAAGGTACTCTAAGGTCTGAG
GGGCTTGTATAAAAAGGGGACAGCTTTTAATGGATGTACTCATTAACAAT
TTACGTTGGCATTGAATACAATGGGAAAAATGGTTTTCCTACAATCAACA
ATCGTCATGCTTACAATTCTATCGGATTTGACGTCATCAGGTAACGACCC
TTATTCTCTCGAGAGTTCACTCTGAAAGTACACAATTATCACCAACCATA
AATCTAAattagtttttttgatttttgatcatGGAAATTTCACATCCCAC
CACATCATCATCAGCTTTCAACCCA
Run BLAST on NCBI

transcript from alignment at scaffold_288:221204..221978

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057424 ID=TCONS_00057424|Name=TCONS_00057424|organism=Clytia hemisphaerica|type=transcript|length=775bp|location=Sequence derived from alignment at scaffold_288:221204..221978 (Clytia hemisphaerica)
TGGGTTGAAAGCTGATGATGATGTGGTGGGATGTGAAATTTCCatgatca
aaaatcaaaaaaactaatTTAGATTTATGGTTGGTGATAATTGTGTACTT
TCAGAGTGAACTCTCGAGAGAATAAGGGTCGTTACCTGATGACGTCAAAT
CCGATAGAATTGTAAGCATGACGATTGTTGATTGTAGGAAAACCATTTTT
CCCATTGTATTCAATGCCAACGTAAATTGTTAATGAGTACATCCATTAAA
AGCTGTCCCCTTTTTATACAAGCCCCTCAGACCTTAGAGTACCTTGTTAT
CGTCATCCATCTTCTAGATGAGCATTTGATGCAAAACTCGTCTGATATGT
TTGTTTGTCTTAAGCCAAAGAATTTTCTTGCAAAGAAGACATCAAAGCTA
CTTTGTGGTGGCCCTACTTCACTTAATCTGCACCTACTTAAGTGCACACT
TTTAGAATTCGTCataatacagtggagtctaactcaaacctctatagcac
gaatatctccttaactcgaattaAGAAGTTTTATGgttcctttagttaac
aatgcccTATTAACCTTACTCCATAGCTCAATATACTTCCAtatttcgaa
caaatttgtgttctctGTGCGTATTCGGGTTATGGAGACTTCACTGTAAC
ACCAATGTATGCAGTCCTAGCTATCCTCATTAGTCACACCGTTTTAACAT
CTAACCACTAGTACCACCAGTAAAGTATAATTAACTAaagttcatttcaa
aacaattgGCAATTCACAAATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036183XLOC_036183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057424-exon-scaffold_288-1491911889:221204..221978TCONS_00057424-exon-scaffold_288-1491911889:221204..221978Clytia hemisphaericaexon
TCONS_00057424-exon-scaffold_288-1510915933:221204..221978TCONS_00057424-exon-scaffold_288-1510915933:221204..221978Clytia hemisphaericaexon
TCONS_00057424-exon-scaffold_288-1575043694:221204..221978TCONS_00057424-exon-scaffold_288-1575043694:221204..221978Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:221204..221978 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0626815	0	0	0	0	0	0	0	0	0.130853	0	0	0.0416875	0	0.0355926	0.0381964	0.141164	0.0964593	0	0	1.5151	0.709453	0.0718694	0.457378	1.07677	1.14118	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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