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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057425 ID=TCONS_00057425|Name=TCONS_00057425|organism=Clytia hemisphaerica|type=transcript|length=1560bp
CTTCGTTTTATCATTTCTAGAAATGTACACACTTGACACGTAATAAAGTA
GATGAGGatacaaaattgaaaacttgGTGCATTATTGTTTGTTTTCTGGC
TGGTAATCTAGTAGACATAAAGAGTGATTAATGTTAGAACTTACATTCTC
GGTTACTCGAACATAAGCCAAACGGGAGAATTGAATTAAAAACTCTGTTT
TCTAGCTGgtaaatttgtataaaaagtaATTGACGAGGCTACATCTTTTA
GTAACGTGAGCATAAGCTAACGCGAGGAtcgaattgaaaattttgttttc
tggCAGTAGAATGGTGAAGAGTAATTGATAAATTCATATTTTTGGTAGCT
TGATCATAAACAAACGTGACGAGATAAATTTCTGGTAACGTAAACAAGAT
TCAAAGGAGAAGCCAACGTGAGCTTTCCACGATGACACGATTCACGGTCA
TGAACCTGAACTTTAGTCTTCTTCAGCATGACCTCGTCACCAATGACAAA
TCGCTGAAGACCTACATCAAAGATCGGATAATACACGAACGCCCAGATAT
TATCTTTCTACAAGGAGTACATCAAGTCAACCTGGCCTCGCTTATTAGAG
ACAGAGACTTATACTACAGTTACTACTCACGAACTACTAAGCGAGGTTTC
TCTGCTGTGATGGTCAACTCCagatcttttgaaattcaaatcctCAACAG
AGACCACTTAAAGCAAGGTAAACCGGAAGAAAGACGAAACATTTTCAATG
GTATCTCATGTATTGAATTGGTCAATAAAACCCTGGGTTTACAACTATAC
GTTGCTTCGTGGCAAGGGAATATTTTACAGAATAGTATGAGTGGTAAAGA
TATTCTAGATGAATCTTATTTACTGACAAAACTAATGAAAGTGGTGAGCG
GAGGTTCTCCCTGGTTGATCGGTGGATGTTTCCAGGacgaaaatcaaaac
atcgaaAGTCGTTTTCTGTTAGGGATGGACGGTAATTCAAGTAAACGTTT
CCGTGTTGACCAGATTCAACAAACTTCCGATGAAGATTTTATGCAAAATT
TTCCCATTGTTGCGCATTTGAGTTTATTAGACCAATGAATGGCTGTTTGG
TTGAGTAGAAACATCCCTGTACCACAGACCCGCTAGGACCCCCAGCTCAC
TGGAGAATTGAGCTAACATTTcgttcccggtgggaaaaatacacTACAAT
TTgcagtcccactggaaaatttactttgatttcctattcgaaattcaatt
tgaatccccactggatttcttaagcttggaacaatagaatttctttcccc
attgggatttcaataagaTTTTCACGCgtttgtgagacaggggtgtgtgg
AAGATGATAGCTCTTCAAATAGTCAGTCAATTAACTTCTTGTCAAGATTA
TGAAAGCTTATGGaaaatttgttttatcaaaactttACATTCTACACTAT
ATTCGTGTAAAATCCATTGAAAGAATTTATACTTTTGGCAATAAGTCTTA
CAAATAAATATACGGGCGCAACGCCCAGATAAATTTTGCAAAGATATTTT
TAGGTTGCAC Run BLAST on NCBI protein sequence of TCONS_00057425-protein >TCONS_00057425-protein ID=TCONS_00057425-protein|Name=TCONS_00057425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MTRFTVMNLNFSLLQHDLVTNDKSLKTYIKDRIIHERPDIIFLQGVHQVN
LASLIRDRDLYYSYYSRTTKRGFSAVMVNSRSFEIQILNRDHLKQGKPEE
RRNIFNGISCIELVNKTLGLQLYVASWQGNILQNSMSGKDILDESYLLTK
LMKVVSGGSPWLIGGCFQDENQNIESRFLLGMDGNSSKRFRVDQIQQTSD
EDFMQNFPIVAHLSLLDQ Run BLAST on NCBI transcript from alignment at scaffold_288:229844..231403 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057425 ID=TCONS_00057425|Name=TCONS_00057425|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at scaffold_288:229844..231403 (Clytia hemisphaerica)
GTGCAACCTAAAAATATCTTTGCAAAATTTATCTGGGCGTTGCGCCCGTA
TATTTATTTGTAAGACTTATTGCCAAAAGTATAAATTCTTTCAATGGATT
TTACACGAATATAGTGTAGAATGTaaagttttgataaaacaaattttCCA
TAAGCTTTCATAATCTTGACAAGAAGTTAATTGACTGACTATTTGAAGAG
CTATCATCTTccacacacccctgtctcacaaacGCGTGAAAAtcttattg
aaatcccaatggggaaagaaattctattgttccaagcttaagaaatccag
tggggattcaaattgaatttcgaataggaaatcaaagtaaattttccagt
gggactgcAAATTGTAgtgtatttttcccaccgggaacgAAATGTTAGCT
CAATTCTCCAGTGAGCTGGGGGTCCTAGCGGGTCTGTGGTACAGGGATGT
TTCTACTCAACCAAACAGCCATTCATTGGTCTAATAAACTCAAATGCGCA
ACAATGGGAAAATTTTGCATAAAATCTTCATCGGAAGTTTGTTGAATCTG
GTCAACACGGAAACGTTTACTTGAATTACCGTCCATCCCTAACAGAAAAC
GACTttcgatgttttgattttcgtCCTGGAAACATCCACCGATCAACCAG
GGAGAACCTCCGCTCACCACTTTCATTAGTTTTGTCAGTAAATAAGATTC
ATCTAGAATATCTTTACCACTCATACTATTCTGTAAAATATTCCCTTGCC
ACGAAGCAACGTATAGTTGTAAACCCAGGGTTTTATTGACCAATTCAATA
CATGAGATACCATTGAAAATGTTTCGTCTTTCTTCCGGTTTACCTTGCTT
TAAGTGGTCTCTGTTGaggatttgaatttcaaaagatctGGAGTTGACCA
TCACAGCAGAGAAACCTCGCTTAGTAGTTCGTGAGTAGTAACTGTAGTAT
AAGTCTCTGTCTCTAATAAGCGAGGCCAGGTTGACTTGATGTACTCCTTG
TAGAAAGATAATATCTGGGCGTTCGTGTATTATCCGATCTTTGATGTAGG
TCTTCAGCGATTTGTCATTGGTGACGAGGTCATGCTGAAGAAGACTAAAG
TTCAGGTTCATGACCGTGAATCGTGTCATCGTGGAAAGCTCACGTTGGCT
TCTCCTTTGAATCTTGTTTACGTTACCAGAAATTTATCTCGTCACGTTTG
TTTATGATCAAGCTACCAAAAATATGAATTTATCAATTACTCTTCACCAT
TCTACTGccagaaaacaaaattttcaattcgaTCCTCGCGTTAGCTTATG
CTCACGTTACTAAAAGATGTAGCCTCGTCAATtactttttatacaaattt
acCAGCTAGAAAACAGAGTTTTTAATTCAATTCTCCCGTTTGGCTTATGT
TCGAGTAACCGAGAATGTAAGTTCTAACATTAATCACTCTTTATGTCTAC
TAGATTACCAGCCAGAAAACAAACAATAATGCACcaagttttcaattttg
tatCCTCATCTACTTTATTACGTGTCAAGTGTGTACATTTCTAGAAATGA
TAAAACGAAG Coding sequence (CDS) from alignment at scaffold_288:229844..231403 >TCONS_00057425 ID=TCONS_00057425|Name=TCONS_00057425|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_288:229844..231403 (Clytia hemisphaerica)
TCATTGGTCTAATAAACTCAAATGCGCAACAATGGGAAAATTTTGCATAA
AATCTTCATCGGAAGTTTGTTGAATCTGGTCAACACGGAAACGTTTACTT
GAATTACCGTCCATCCCTAACAGAAAACGACTttcgatgttttgattttc
gtCCTGGAAACATCCACCGATCAACCAGGGAGAACCTCCGCTCACCACTT
TCATTAGTTTTGTCAGTAAATAAGATTCATCTAGAATATCTTTACCACTC
ATACTATTCTGTAAAATATTCCCTTGCCACGAAGCAACGTATAGTTGTAA
ACCCAGGGTTTTATTGACCAATTCAATACATGAGATACCATTGAAAATGT
TTCGTCTTTCTTCCGGTTTACCTTGCTTTAAGTGGTCTCTGTTGaggatt
tgaatttcaaaagatctGGAGTTGACCATCACAGCAGAGAAACCTCGCTT
AGTAGTTCGTGAGTAGTAACTGTAGTATAAGTCTCTGTCTCTAATAAGCG
AGGCCAGGTTGACTTGATGTACTCCTTGTAGAAAGATAATATCTGGGCGT
TCGTGTATTATCCGATCTTTGATGTAGGTCTTCAGCGATTTGTCATTGGT
GACGAGGTCATGCTGAAGAAGACTAAAGTTCAGGTTCATGACCGTGAATC
GTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057425-exon-scaffold_288-1491911889:229844..231403 | TCONS_00057425-exon-scaffold_288-1491911889:229844..231403 | Clytia hemisphaerica | exon |
| TCONS_00057425-exon-scaffold_288-1510915933:229844..231403 | TCONS_00057425-exon-scaffold_288-1510915933:229844..231403 | Clytia hemisphaerica | exon |
| TCONS_00057425-exon-scaffold_288-1575043694:229844..231403 | TCONS_00057425-exon-scaffold_288-1575043694:229844..231403 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:229844..231403 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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