TCONS_00057427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057427
Unique NameTCONS_00057427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057427 ID=TCONS_00057427|Name=TCONS_00057427|organism=Clytia hemisphaerica|type=transcript|length=257bp
CTTATCATCGCTCATCTTTTAATCTTGCCCCTTTTTATGACATGACAATA
TCATACGGGCGCAAAAAGAGTaattaaattttacaaaatatgatatttta
caaattttatttacaaaagtattcaaaaaatatttgcaaGTTTTGAGCAA
TTAAAATCTGagctatttaaaaaaagttttaatatcATGAGATAAATTTC
CGTAAGCATTTATTTTCGCGAGACAAGCATTTAATTTtacgaaattttga
aaaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_288:341085..341341

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057427 ID=TCONS_00057427|Name=TCONS_00057427|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at scaffold_288:341085..341341 (Clytia hemisphaerica)
gtttttttcaaaatttcgtaAAATTAAATGCTTGTCTCGCGAAAATAAAT
GCTTACGGAAATTTATCTCATgatattaaaactttttttaaatagctCAG
ATTTTAATTGCTCAAAACttgcaaatattttttgaatacttttgtaaata
aaatttgtaaaatatcatattttgtaaaatttaattACTCTTTTTGCGCC
CGTATGATATTGTCATGTCATAAAAAGGGGCAAGATTAAAAGATGAGCGA
TGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036186XLOC_036186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057427-exon-scaffold_288-1491911889:341085..341341TCONS_00057427-exon-scaffold_288-1491911889:341085..341341Clytia hemisphaericaexon
TCONS_00057427-exon-scaffold_288-1510915933:341085..341341TCONS_00057427-exon-scaffold_288-1510915933:341085..341341Clytia hemisphaericaexon
TCONS_00057427-exon-scaffold_288-1575043694:341085..341341TCONS_00057427-exon-scaffold_288-1575043694:341085..341341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:341085..341341 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.761298	0	0	0	0.827197	2.31656	1.43472	0.696285	1.83084	0	1.42403	0.780497	0	1.03185	0	0	2.29347	0	0.972332	0.787998	0.716404	2.21364	1.31708	1.88474	5.02861	1.52561	0.777176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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