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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057437 ID=TCONS_00057437|Name=TCONS_00057437|organism=Clytia hemisphaerica|type=transcript|length=804bp
TTGAAGCAACTGAGAGGGGACTAATAACCTTTGGTGCAAACTCTACCTCC
CTGGCCGAGCCGTCTTGAAGTAAATCCCTTATCGATTCTGTAACaaattc
tttgttttcgagtgcggatttgttgttgtttgaaaTGCTTGATTCAGGAA
TGTCGACAAAGGGTAAAAAATATCCGTATTTGATGATGTCTAGATAGAAT
GTACTTCGGTGCCTTCAAAGTCTTTGACCAGAAATCCAGTTTAGGCTTAA
GTTTTCCTTTTACAGAGTTTTTTTCAGAATCAACAAGAAAATTAGAATTA
CACTTATCTTTAGTTTCTGGAGTCTCTCCTGGATTTTCTTTCAGGGCACT
CGTGTCGCCAGTGGCCATATCTGTTACATGCAAGGCAACGTTCATTCGAT
CTGGAATTGCTGTATTTTGTCGTGTAATGGCTCCCAGAAGACGACTCGGG
GTTCCGGGACAAAGTTGAGGATTGCTTGAATCTCTTCGAAGGTTCGGATT
GGATTCTTTCCAGTGCACGTTTTTCAGCTCTCTTCAGACGCTTCTCGTCG
GCGGTGTCGGATGCAACGCTGTCGGTTTCGTACTCTTTAACAGTACTCCA
TCCACCGGGGGATTTATCAGcaattttaacaagtttgttTCTTTTCTTGA
GGTNACTCCATCCACCGGGGGATTTATCAGCAATTTTAATAAGTTTGTTT
CTTTTCTTGAGGTTTTTTGATAGATCTTTTAGTTTACTTTTTGCCTTCTT
AATGTTCTTGTGCTTAAGGTGACTTAATGCTTTCTCGACTAGGCGAAGCT
GATC Run BLAST on NCBI protein sequence of TCONS_00057437-protein >TCONS_00057437-protein ID=TCONS_00057437-protein|Name=TCONS_00057437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
DQLRLVEKALSHLKHKNIKKAKSKLKDLSKNLKKRNKLIKIADKSPGGWS
XLKKRNKLVKIADKSPGGWSTVKEYETDSVASDTADEKRLKRAEKRALER
IQSEPSKRFKQSSTLSRNPESSSGSHYTTKYSNSRSNERCLACNRYGHWR
HECPERKSRRDSRN Run BLAST on NCBI transcript from alignment at scaffold_288:540881..541684 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057437 ID=TCONS_00057437|Name=TCONS_00057437|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at scaffold_288:540881..541684 (Clytia hemisphaerica)
GATCAGCTTCGCCTAGTCGAGAAAGCATTAAGTCACCTTAAGCACAAGAA
CATTAAGAAGGCAAAAAGTAAACTAAAAGATCTATCAAAAAACCTCAAGA
AAAGAAACAAACTTATTAAAATTGCTGATAAATCCCCCGGTGGATGGAGT
NACCTCAAGAAAAGAaacaaacttgttaaaattgCTGATAAATCCCCCGG
TGGATGGAGTACTGTTAAAGAGTACGAAACCGACAGCGTTGCATCCGACA
CCGCCGACGAGAAGCGTCTGAAGAGAGCTGAAAAACGTGCACTGGAAAGA
ATCCAATCCGAACCTTCGAAGAGATTCAAGCAATCCTCAACTTTGTCCCG
GAACCCCGAGTCGTCTTCTGGGAGCCATTACACGACAAAATACAGCAATT
CCAGATCGAATGAACGTTGCCTTGCATGTAACAGATATGGCCACTGGCGA
CACGAGTGCCCTGAAAGAAAATCCAGGAGAGACTCCAGAAACTAAAGATA
AGTGTAATTCTAATTTTCTTGTTGATTCTGAAAAAAACTCTGTAAAAGGA
AAACTTAAGCCTAAACTGGATTTCTGGTCAAAGACTTTGAAGGCACCGAA
GTACATTCTATCTAGACATCATCAAATACGGATATTTTTTACCCTTTGTC
GACATTCCTGAATCAAGCAtttcaaacaacaacaaatccgcactcgaaaa
caaagaatttGTTACAGAATCGATAAGGGATTTACTTCAAGACGGCTCGG
CCAGGGAGGTAGAGTTTGCACCAAAGGTTATTAGTCCCCTCTCAGTTGCT
TCAA Coding sequence (CDS) from alignment at scaffold_288:540881..541684 >TCONS_00057437 ID=TCONS_00057437|Name=TCONS_00057437|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_288:540881..541684 (Clytia hemisphaerica)
GATCAGCTTCGCCTAGTCGAGAAAGCATTAAGTCACCTTAAGCACAAGAA
CATTAAGAAGGCAAAAAGTAAACTAAAAGATCTATCAAAAAACCTCAAGA
AAAGAAACAAACTTATTAAAATTGCTGATAAATCCCCCGGTGGATGGAGT
NACCTCAAGAAAAGAaacaaacttgttaaaattgCTGATAAATCCCCCGG
TGGATGGAGTACTGTTAAAGAGTACGAAACCGACAGCGTTGCATCCGACA
CCGCCGACGAGAAGCGTCTGAAGAGAGCTGAAAAACGTGCACTGGAAAGA
ATCCAATCCGAACCTTCGAAGAGATTCAAGCAATCCTCAACTTTGTCCCG
GAACCCCGAGTCGTCTTCTGGGAGCCATTACACGACAAAATACAGCAATT
CCAGATCGAATGAACGTTGCCTTGCATGTAACAGATATGGCCACTGGCGA
CACGAGTGCCCTGAAAGAAAATCCAGGAGAGACTCCAGAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057437-exon-scaffold_288-1491911889:540881..541684 | TCONS_00057437-exon-scaffold_288-1491911889:540881..541684 | Clytia hemisphaerica | exon |
| TCONS_00057437-exon-scaffold_288-1510915933:540881..541684 | TCONS_00057437-exon-scaffold_288-1510915933:540881..541684 | Clytia hemisphaerica | exon |
| TCONS_00057437-exon-scaffold_288-1575043694:540881..541684 | TCONS_00057437-exon-scaffold_288-1575043694:540881..541684 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:540881..541684 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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