TCONS_00057446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057446
Unique NameTCONS_00057446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057446 ID=TCONS_00057446|Name=TCONS_00057446|organism=Clytia hemisphaerica|type=transcript|length=270bp
NNAAAGTCCAAAGATGGCTATGTGAAAGATAAACCACTTTTCACTTACGT
TTTTAGCACCCCCCATTGAAGTCGAAAGTATTCTACATTAAATAGATTTT
TCCCAGACCATTTTTCTGTGACTGTCACAGTGTTCTTTACAGCTTATCAC
TAGAACTATTGTTATGCTTTATCTATTTGTAAAATGTTTAtaggatgttt
ttataaaatatacgattggtgttgaaataaatatatgttattttcgtttg
aggtacgaattagaaaataa
Run BLAST on NCBI

transcript from alignment at scaffold_288:772705..772974

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057446 ID=TCONS_00057446|Name=TCONS_00057446|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at scaffold_288:772705..772974 (Clytia hemisphaerica)
ttattttctaattcgtacctcaaacgaaaataacatatatttatttcaac
accaatcgtatattttataaaaacatcctaTAAACATTTTACAAATAGAT
AAAGCATAACAATAGTTCTAGTGATAAGCTGTAAAGAACACTGTGACAGT
CACAGAAAAATGGTCTGGGAAAAATCTATTTAATGTAGAATACTTTCGAC
TTCAATGGGGGGTGCTAAAAACGTAAGTGAAAAGTGGTTTATCTTTCACA
TAGCCATCTTTGGACTTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036204XLOC_036204Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057446-exon-scaffold_288-1491911889:772705..772974TCONS_00057446-exon-scaffold_288-1491911889:772705..772974Clytia hemisphaericaexon
TCONS_00057446-exon-scaffold_288-1510915933:772705..772974TCONS_00057446-exon-scaffold_288-1510915933:772705..772974Clytia hemisphaericaexon
TCONS_00057446-exon-scaffold_288-1575043694:772705..772974TCONS_00057446-exon-scaffold_288-1575043694:772705..772974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:772705..772974 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.998028	0	0	0.516657	0	1.43271	0	0	0.636889	1.13074	4.20905	0.643612	0.690694	2.39846	1.22954	5.95295	5.43363	3.1992	0.502242	0	5.01683	0.608469	2.29282	5.18309	6.53048	5.43145	0.763285
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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