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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057448 ID=TCONS_00057448|Name=TCONS_00057448|organism=Clytia hemisphaerica|type=transcript|length=1637bp
AGGTACTCTTGACTACTTGACCAGCGCTCGGAGTGGATAGAAGCAAATGA
GAATAAAGAGGCAGTTTTAAACACGAAGATAAGTAGTCGTTTcattttaa
gggttttttaGCCTATGTTATAAACTTGAATCAATCATTGGAAAGATTTT
CAGCCTTGgtatatatttatattttatacttCATTTCCTCAGGGTGGGAA
AAATttagaatataaatttttgttcaGCTAGCCTTACATCATTACCCCCT
TTCCATCCCCTaagcttttctttttcttaccctttcttgaaatctttttt
ggtaGAACCAAATTATGCAGGTGTTTAGTAATTCGCGTGTCCAATTGAGT
CACTGGCGTGCGCCCTGCCGTAAATAGCATAAGTCCCTTTAAAATGACAT
AATCCAGCTGCATGATTCTTGAATCTCCTTTTACCTGGCGTTTGCCGACG
GACCATATCCTATCCTTCAAAAGTCGCCGATGTATAATTTCgtaatttgt
ataattttccaTCATTTAATTTCAATGTCAATTAATTATCTCTTCtagat
tctaaaaaaatttgccgccttcaaaaaataattcacagcTTTTTCTCAAA
ACTATTCCCTAGATAATTATTTCTGAAGAGGTGGGTTTGTATAAATTTGC
AACATTTTTCTTTCAGGCAAGTTCATTCAAAGTAAGTTCAAGGCAAACTC
AAGACAAAAGACTTTCACAGTAAGTTCTCAATAATGTTTCACCAAATGAC
TTATTCGCCCTCTTTCCCGCCCGTCTCCTTCAACGCAACGCCCTGCAGAC
AAGACTTCTACTCTCCCGAATCATCATGCCAATTCGGCGTCAACACTCTA
CAAATGGCCAATATTACGCCGCCCAGTCATCAGATGCCACAAAACTATCC
TACATCACAATTTGTCGACGACCAACAACAACCAGCCAGAATCGTTAAGC
GTCGCATCGTTTTTGTGGATGACTCAACCATCTCTTCAACGCCGTTCATC
TCCCAATCTACCGATCCCGCCCTGATCAATACCCGCCCTCAAACACGAGA
GATGTCAACCCAAACAGAGAACTCGACACAAATAGAAGAGCAACAAACCA
AACAACGCCCTTCAAAACGTAAAATCGACGAAGTGACAAACGCTAAAGGA
AGCAAACGACTAAAAGATGTTGGTCGAAACGAACGTGAAAGATCTCGCGT
CCGAAACGAAGGAAACGCGTATAATATATTGCGTTCGCATCTCCCACCTC
TTGGACATGACAGAAGGAGAAACAAACCTGTTTACGCTAGaactcatttt
gaaatcttaAAATCGACAATCAAGTATATATCGGACCTTCAAAACCTCTT
AGCTGAAGCAGACGCCAATCCCAGTAGCTAAACTTTTGGAACTTACAAGA
AGTTCAGTTTTTGTATATAATTGTACAGAAAGTCTATGAGGTCTTCCATG
ATCCATCACCATCAGAATTTCATACAGTATTGTCATTGCAATTTAGGCAT
TATTGAATGGCAAAGATGATAATGGTACTTGCATCGTACAtcgtttttct
tataaatttcTTACAAATTTCGCGATTATTGACTTGATCTATTTTGACTT
CTATAATTGAAGAGTATGATGAATAGGTGAATTAGCA Run BLAST on NCBI protein sequence of TCONS_00057448-protein >TCONS_00057448-protein ID=TCONS_00057448-protein|Name=TCONS_00057448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MFHQMTYSPSFPPVSFNATPCRQDFYSPESSCQFGVNTLQMANITPPSHQ
MPQNYPTSQFVDDQQQPARIVKRRIVFVDDSTISSTPFISQSTDPALINT
RPQTREMSTQTENSTQIEEQQTKQRPSKRKIDEVTNAKGSKRLKDVGRNE
RERSRVRNEGNAYNILRSHLPPLGHDRRRNKPVYARTHFEILKSTIKYIS
DLQNLLAEADANPSS Run BLAST on NCBI transcript from alignment at scaffold_289:13595..17821+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057448 ID=TCONS_00057448|Name=TCONS_00057448|organism=Clytia hemisphaerica|type=transcript|length=4227bp|location=Sequence derived from alignment at scaffold_289:13595..17821+ (Clytia hemisphaerica)
AGGTACTCTTGACTACTTGACCAGCGCTCGGAGTGGATAGAAGCAAATGA
GAATAAAGAGGCAGTTTTAAACACGAAGATAAGTAGTCGTTTcattttaa
gggttttttaGCCTATGTTATAAACTTGAATCAATCATTGGAAAGATTTT
CAGCCTTGgtatatatttatattttatacttCATTTCCTCAGGGTGGGAA
AAATttagaatataaatttttgttcaGCTAGCCTTACATCATTACCCCCT
TTCCATCCCCTaagcttttctttttcttaccctttcttgaaatctttttt
ggtaGAACCAAATTATGCAGGTGTTTAGTAATTCGCGTGTCCAATTGAGT
CACTGGCGTGCGCCCTGCCGTAAATAGCATAAGTCCCTTTAAAATGACAT
AATCCAGCTGCATGATTCTTGAATCTCCTTTTACCTGGCGTTTGCCGACG
GACCATATCCTATCCTTCAAAAGTCGCCGATGTATAATTTCgtaatttgt
ataattttccaTCATTTAATTTCAATGTCAATTAATTATCTCTTCtagat
tctaaaaaaatttgccgccttcaaaaaataattcacagcTTTTTCTCAAA
ACTATTCCCTAGATAATTATTTCTGAAGAGGTGGGTTTGTATAAATTTGC
AACATTTTTCTTTCAGGCAAGTTCATTCAAAGTAAGTTCAAGGCAAACTC
AAGACAAAAGACTTTCACAGTAAGGTATGTATCTTATGCTCTAgactaat
agaccttttcataaattacgtcacgaacatcacttgcctcgttttgaaat
tattgccatggtgattaactccaaGCGGATTTTATTTAAACtactttctt
ttcataaaaaaatcatttaatgtctcaagggacataatcaccatagcgat
tgtttgaaaacgaggcaagtgatgttcgtgacgtaatttatgaaaaggtc
tattccttTATATTAATATTCTTTGGTCATATCTATATTTTTTGTGACCG
CGTCGTTCTCTCGCGGTCCTTTACGGGAGAGGGATTgctcagggtccctt
ttttaggttCTTAAGAAATCTGACAGGgtcaacttttatttatattgcac
gatacacgtttttcggatgttcttaacattttcttatcTATACCATTTTG
TGAGAgaaggcccggcggaagcgagGAGACCAGAgagacttcagcctctc
cacttttgagcaaatgagattttttttgtcaagtttcaagggaatttcat
ctcattttgagccttcagcctccccacttttacggttgttccgctgGACC
TGcagtatttttgaccattttcctaagaaatgttcttaaaatgttcttaa
cttgttcttaacattttagtttgttctcataaaaaatctTATATGCAGGG
TAGAAATTAAAATCTTTCGTCttcttttagtcatttttgccaatttttgc
caatttttgccaattgggagagattttcgatttttcatcccgacagggtc
ccaaattttatcaaacattcatatctgacatggtcaacttttcaaactcc
agcggctcGTCCCCGTCacccgtcaaggtcagtgccttCTCCCCACGGAG
GGTTTGTCTCATATGGAGTGCTGCTTGAATCGACAATTAACATTTTTTCA
GGGGTGTTATGCTGTTACGTCGTAGCAGCTTAATTTTATCAAACATGATC
CCTAGCAATGGGTACTGCCTTAATCGAATCGTAGTCAATTGTATTTTTGT
TTGAGATTTTCCCTGTTGAGTTTCCTCAGCTGGGTATCGACTACAGCTCA
GCCTGatgatatacacgtttttttataagaacaaactatataagaacata
aggcttcggtgaccaaaatcttaagaacaacttatgaacatttttaggct
tgaaacccggaaagttaagaacatctgaatgcttcaaaaattttggatgc
tcttataaaaaaacgtgtaagtcaTTGATCCGggtcatttttattacatt
gCTCAAAGAAAATCAAGGTTGGCTCTTTTTTGGATGTTTGAGAGCAAAAG
GTTGAGATTTAAGTCCCATTTTATGTTATATTGTTCACTACGTATTGTTT
GTTAAAGTCCCTTTTTTGAACCGATCATtcatatacacgcttttttgtaa
taagaatagtgtactttggctgagggtgagcattattcttatttttctat
tgttctaaacaataggtcTATTGTTTTAACTctaaaatctcaccctgata
ttcttatagaagttattcttataaaaaagaaagcgtGTATGACCTTTAAA
GTATTCagtcatttttggacctaccgggaggtcctttaatttgaccgttg
tccgttcgtctgttacaagcttttcttgggattggctcattagttttttt
ttaattttttgcacaatgatacaaaatagcaatgcctgaaaagtgacgga
gcccgatttttgaaaaaaaattttggggggcaaatttgggccaaaaacta
cctaaaaataaggttttttggacttggtgcaagattgcttcattagtttt
tcctgattttatgCATATAGAtcgagggcaaggttctctaaaaagtggct
gtagcagtttttttcggaaaattttttttggctgtaaaatcggattttct
tattcggggaaattcccttatttcattttaagggaaaaagagcatttctT
GCGATtgcattgatatttttttctgaatttttgcactttgatgtaaaatg
gtaatatttaaactCTGAtgaagcctgattttcaaaaaataatttatttg
ggcaaatttgggccNNNNNNNNNNNNNNNNNNNNNNNNNttgggccaaaa
agtgcctaaaaatgggatttttggactttgtgtgaaattgcttcattagt
tttttctgattttttggacaaagatgaAGGGCAAGGTTTTTTAAACTGTG
ACTGAAgtactttttttttggaaaatttaattggccgtaaaaatcggatt
ttcttatttggggaaattcccttttgtcatatttagggaaaatgagcatt
tctcgagattggcttagtatttttttcttattttttgtatagtggtaatt
tgggtagaaaagtgcctaatgtttgttttttttagacatttttgaCTAAT
TTGAGCTCTGATACTCTGATACTCAagctgctcactacactttcttattc
ccttgctatttgtcctatttttttctgattttgatcgacaggtaggtcca
ttcagcatgttgcttgtttatttAGCAGCAATATTGCATgactttttgat
tctttttcttcTAGTTCTCAATAATGTTTCACCAAATGACTTATTCGCCC
TCTTTCCCGCCCGTCTCCTTCAACGCAACGCCCTGCAGACAAGACTTCTA
CTCTCCCGAATCATCATGCCAATTCGGCGTCAACACTCTACAAATGGCCA
ATATTACGCCGCCCAGTCATCAGATGCCACAAAACTATCCTACATCACAA
TTTGTCGACGACCAACAACAACCAGCCAGAATCGTTAAGCGTCGCATCGT
TTTTGTGGATGACTCAACCATCTCTTCAACGCCGTTCATCTCCCAATCTA
CCGATCCCGCCCTGATCAATACCCGCCCTCAAACACGAGAGATGTCAACC
CAAACAGAGAACTCGACACAAATAGAAGAGCAACAAACCAAACAACGCCC
TTCAAAACGTAAAATCGACGAAGTGACAAACGCTAAAGGAAGCAAACGAC
TAAAAGATGTTGGTCGAAACGAACGTGAAAGATCTCGCGTCCGAAACGAA
GGAAACGCGTATAATATATTGCGTTCGCATCTCCCACCTCTTGGACATGA
CAGAAGGAGAAACAAACCTGTTTACGCTAGaactcattttgaaatcttaA
AATCGACAATCAAGTATATATCGGACCTTCAAAACCTCTTAGCTGAAGCA
GACGCCAATCCCAGTAGCTAAACTTTTGGAACTTACAAGAAGTTCAGTTT
TTGTATATAATTGTACAGAAAGTCTATGAGGTCTTCCATGATCCATCACC
ATCAGAATTTCATACAGTATTGTCATTGCAATTTAGGCATTATTGAATGG
CAAAGATGATAATGGTACTTGCATCGTACAtcgtttttcttataaatttc
TTACAAATTTCGCGATTATTGACTTGATCTATTTTGACTTCTATAATTGA
AGAGTATGATGAATAGGTGAATTAGCA Coding sequence (CDS) from alignment at scaffold_289:13595..17821+ >TCONS_00057448 ID=TCONS_00057448|Name=TCONS_00057448|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_289:13595..17821+ (Clytia hemisphaerica)
ATGTTTCACCAAATGACTTATTCGCCCTCTTTCCCGCCCGTCTCCTTCAA
CGCAACGCCCTGCAGACAAGACTTCTACTCTCCCGAATCATCATGCCAAT
TCGGCGTCAACACTCTACAAATGGCCAATATTACGCCGCCCAGTCATCAG
ATGCCACAAAACTATCCTACATCACAATTTGTCGACGACCAACAACAACC
AGCCAGAATCGTTAAGCGTCGCATCGTTTTTGTGGATGACTCAACCATCT
CTTCAACGCCGTTCATCTCCCAATCTACCGATCCCGCCCTGATCAATACC
CGCCCTCAAACACGAGAGATGTCAACCCAAACAGAGAACTCGACACAAAT
AGAAGAGCAACAAACCAAACAACGCCCTTCAAAACGTAAAATCGACGAAG
TGACAAACGCTAAAGGAAGCAAACGACTAAAAGATGTTGGTCGAAACGAA
CGTGAAAGATCTCGCGTCCGAAACGAAGGAAACGCGTATAATATATTGCG
TTCGCATCTCCCACCTCTTGGACATGACAGAAGGAGAAACAAACCTGTTT
ACGCTAGaactcattttgaaatcttaAAATCGACAATCAAGTATATATCG
GACCTTCAAAACCTCTTAGCTGAAGCAGACGCCAATCCCAGTAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057448-exon-scaffold_289-1491911889:13595..14318 | TCONS_00057448-exon-scaffold_289-1491911889:13595..14318 | Clytia hemisphaerica | exon |
| TCONS_00057448-exon-scaffold_289-1510915933:13595..14318 | TCONS_00057448-exon-scaffold_289-1510915933:13595..14318 | Clytia hemisphaerica | exon |
| TCONS_00057448-exon-scaffold_289-1575043694:13595..14318 | TCONS_00057448-exon-scaffold_289-1575043694:13595..14318 | Clytia hemisphaerica | exon |
| TCONS_00057448-exon-scaffold_289-1491911889:16909..17821 | TCONS_00057448-exon-scaffold_289-1491911889:16909..17821 | Clytia hemisphaerica | exon |
| TCONS_00057448-exon-scaffold_289-1510915933:16909..17821 | TCONS_00057448-exon-scaffold_289-1510915933:16909..17821 | Clytia hemisphaerica | exon |
| TCONS_00057448-exon-scaffold_289-1575043694:16909..17821 | TCONS_00057448-exon-scaffold_289-1575043694:16909..17821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:13595..17821 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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