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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057452 ID=TCONS_00057452|Name=TCONS_00057452|organism=Clytia hemisphaerica|type=transcript|length=1699bp
cagataaaaaaataaacataaacaaaaaaaatgaaataaggcAGAAAATA
TCAGTACCACCACAGACGCTGACAAATTGATCATGAGACAACAATTTGTT
ATTGGTGTTATTTCTTTGATTGTCTTTCTCTATGTGGTGGAGGttacatt
tttctcttctcCAAAAATTGCACGTCAAAAAGTAATTAAACATGATCGGT
TTTGGTATAGAAAGCGTTTATATGCACACATGGCCTCtattaataataaa
aaaatgatggAAAGGTTCACAGATCTACATTTGAGTAGTGAACAAGCCAT
ATTGGATGCCATGGAAGAGGAATTGAAGGAGCTGGAAAGCTTTGGTATCG
ATGTTGATGATTTTGAAGAACGCCCTATACCAGGTGCTCTAAAACGTGTC
AAATTACCGGCTACTCATATATCCATGGTGGGAGATGATGCTGAAGTTCA
CAGGCAACGAGATGCTCACGATAAGGAGGAATCTCTAAATCCAGAACCGA
TTACTGAAGCTACTAAGAGAGACAATGACTTGGTAACGGATGAGAGTGAA
GGAAATTTTACGCGTGAGTTAAGTCGTCGGTTTCGAGTTCGGGATCCTGA
TCCTGATGATCTCcagaaattgaccaaaaaaggTATCGATTTTGAACGGG
AGACTGATCCTTTAGCGGAATCTACTTATTGTGAAAAAGAAGtctttttg
accattttggtGATTAGTCAACCTAAGAGTGTCGAACGGCGGAGGTTTAT
TCGTGACACCTGGGCTCGAAGCTACCAAGAGGATTTTAGAAAGCTCAAAG
GGAAACAGCCTTTCCCTAATGGGAAAACCTATTCCACTTCAGATGTTGTA
CGTGTAGTTTTCGTTGTGGGTCAGTCAGCGCAAACTGATACCAAAGTAAT
GCAATCAGTCAAAGAAGAATCTCGAATGAACAAAGATATTGTTTTTGGTA
GTATGATGGAGAATTACCGAAATTTAACCACGAAAACAAAACTTGGTTTG
AAATGGGCTTTTTATGAATGTAAAACGTCTTATGTTTTGAAAACGGATGA
TGATGTTTTTGTAAATCCAGTGGTGCTGGTGGAATGGTTGAAAGAGATCC
CGAAAACGAACTTGTATACTGGATGGTGTAACTTCAATTCACCTGTTGTA
AGGGATAAGCGCAATAAGTGGTATATTTCATATGAAGATTACAAGGAAGA
GAAGTACCCTGGATATTGTCTCGGCGGGGGCTATCTTATTTCCTCTGATG
TGTTAGCATCTGTAATCAAACTATCTTACGGTCGTTTTTTGTTTCCTATG
GAAGATTTATACGTTGGTTTGATGATCAGAGAGTTAGATGGAGTTCAACC
GAGAGACGAAAGGAAACATTTCAACCTTGTTTATAATGGGAAGACTGAAA
ATAGCTNCCCCAGAGAAATCTTAAGGCCCTCAAAGTTCTAatttaggttt
taaggtgtattttGATTCTAACATACAgtcttgaaaatatttaggtccCA
ATGATCTTATTGCAACATTAGTtactttgcagtgaatcactgttcaaaat
ttgagaccaaaaggacTATTATATAAAAAGCTTNAAACTGGGCAAACAAG
CTAGATATGCATTGGTGAATTGTTGATCCTCTTCACTCACTCAATCGGGT
TGGATGTAataattttaaggatttttatgTATCATAGATATTTAATTTT Run BLAST on NCBI transcript from alignment at scaffold_289:37882..44534+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057452 ID=TCONS_00057452|Name=TCONS_00057452|organism=Clytia hemisphaerica|type=transcript|length=6653bp|location=Sequence derived from alignment at scaffold_289:37882..44534+ (Clytia hemisphaerica)
cagataaaaaaataaacataaacaaaaaaaatgaaataaggcAGAAAATA
TCAGTACCACCACAGACGCTGACAAATTGATCATGAGACAACAATTTGTT
ATTGGTGTTATTTCTTTGATTGTCTTTCTCTATGTGGTGGAGGttacatt
tttctcttctcCAAAAATTGCACGTCAAAAAGTAATTAAACATGATCGGT
TTTGGTATAGAAAGCGTTTATATGCACACATGGCCTCtattaataataaa
aaaatgatggAAAGGTTCACAGATCTACATTTGAGTAGTGAACAAGCCAT
ATTGGATGCCATGGAAGAGGAATTGAAGGAGCTGGAAAGCTTTGGTATCG
ATGTTGATGATTTTGAAGAACGCCCTATACCAGGTGCTCTAAAACGTGTC
AAATTACCGGCTACTCATATATCCATGGTGGGAGATGATGCTGAAGTTCA
CAGGCAACGAGATGCTCACGATAAGGAGGAATCTCTAAATCCAGAACCGA
TTACTGAAGCTACTAAGAGAGACAATGACTTGGTAACGGATGAGAGTGAA
GGAAATTTTACGCGTGAGTTAAGTCGTCGGTTTCGAGTTCGGGATCCTGA
TCCTGATGATCTCcagaaattgaccaaaaaaggTATCGATTTTGAACGGG
AGACTGATCCTTTAGCGGAATCTACTTATTGTGAAAAAGAAGtctttttg
accattttggtGATTAGTCAACCTAAGAGTGTCGAACGGCGGAGGTTTAT
TCGTGACACCTGGGCTCGAAGCTACCAAGAGGATTTTAGAAAGCTCAAAG
GGAAACAGCCTTTCCCTAATGGGAAAACCTATTCCACTTCAGATGTTGTA
CGTGTAGTTTTCGTTGTGGGTCAGTCAGCGCAAACTGATACCAAAGTAAT
GCAATCAGTCAAAGAAGAATCTCGAATGAACAAAGATATTGTTTTTGGTA
GTATGATGGAGAATTACCGAAATTTAACCACGAAAACAAAACTTGGTTTG
AAATGGGCTTTTTATGAATGTAAAACGTCTTATGTTTTGAAAACGGATGA
TGATGTTTTTGTAAATCCAGTGGTGCTGGTGGAATGGTTGAAAGAGATCC
CGAAAACGAACTTGTATACTGGATGGTGTAACTTCAATTCACCTGTTGTA
AGGGATAAGCGCAATAAGTGGTATGATGTTTCTTCTTATtcactttttta
ttgttttcgcTCACTAGCTCACTCACTAAGAGAAAGGTTGGCTCTCTGTT
TTAGAATGCTTTCAAGAATATTAGAATTAGAATATAAAATCCTTTCAAGT
TGAAAATACCTCATTAGCTCATtatggcctttttcgacgaaatTCTTCTC
GAATTAGGTTCTGAGTTACAATTTGAAAATCGAAAGTCATTACCGTAATA
TAACTTGCTTATTTCTTGCACggcattttaaaacaaaagaagaacgACTT
CCTCCGGGTGAACACAATCGGAAAACCTGTTTAGTCAGCATAAGTTGTGC
GCTTGCTTTTGTTTATCACTAAAATTATTGTCTTTAATCTTCCTAATCGT
TATGATATTTCTTCTCACTTTCAGGTATATTTCATATGAAGATTACAAGG
AAGAGAAGTACCCTGGATATTGTCTCGGCGGGGGCTATCTTATTTCCTCT
GATGTGTTAGCATCTGTAATCAAACTATCTTACGGTCGTTTTTTGTTTCC
TATGGAAGATTTATACGTTGGTTTGATGATCAGAGAGTTAGATGGAGTTC
AACCGAGAGACGAAAGGAAACATTTCAATCTTGTTTATAATGGGAAGACT
GAAAATAGTTGTGATTTGAACTCTATATTTTTGTTGCATAGGGTACTTGG
TCAAAACCTTGTCAAACACATCAATCAATCTAGAAATGCGCTAGAGAATT
GTTGATTATAGTATTNAATTCACCTGTTGTAAGGGATAAGCGCAATAAGT
GGTATGATGTTTCTTCTTATtcacttttttattgttttcgcTCACTAGCT
CACTCACTGAGAGAAAGGTTGGCTCTCTGTTTTAGAATGCTTTCAAGAAT
ATTAGAATTTGAATATAAAATCCTTTCAAGTTGAAAATACCTCATTATGG
CCTTTTTCGACTGAATTCTTCTCGAATTAGGTTCTGAGTTACAAATTGAA
AATCGAAAGTCATTACGTAATATAACTTGCTTATAACTTATGTAGCATCG
TGCATTTCTTGCACggcattttaaaacaaaagaagaacgACTTCCTCCGG
GTGAACAAAATTGGAAAACCTGTTTAGTCAGCATAAGTTGTGCGCTTGCT
TTTGTTTATCATTAAAATTGTTGTCTTTAATCTTCCTAATCGTTATGATA
TTTCTTCTCACTTTCAGGTATATTTCATATGAAGATTACAAGGAAGAGAA
GTACCCTGGATATTGTCTCGGCGGGGGCTATCTTATTTCCTCTGATGTGT
TAGCATCTGTAATCAAACTATCTTACGGTCGTTTTTTGTTTCCTATGGAA
GATTTATACGTTGGTTTGATGATCAGAGAGTTAGATGGAGTTCAACCGAG
AGACGAAAGGAAACATTTCAATCTTGTTTATAATGGGAAGACTGAAAATA
GTTGTGATTTGAACTCTATATTTTTGTTGCATAGGGTACTTGGTCAAAAC
CTTGTCAAACACATCAATCAATCTAGAAATGCGCTAGAGAATTGTTGATT
ATAGTATTATTATTTCAGTTTTCTCCCTGATTTTGCTATATATTACAAAT
ATATTGAAAGACCTTTTTTCCATAGCTCTATAGATGTATTCAATCAGTGA
AATCCCAAAATTTACTTTGATGCAGATCTTCCGCTTGCGTTGAACAGTAA
TGGGGACTTAGGAGTTggttattttttgtaattttaaggttttttaatta
tcttttaatgtttttttaagtttttaccgtatgttttttatgtttttgac
tTATTTTTCGATTTCGGACATACTTTTTATATTATTTGTATGCTGTTTTT
ATGtacctgtttttttttgtttgaatgcGATGTCAAATGCTTTATCTTTT
TTCAGCTTTGCTTTTTGTGTGTCTTATTGCCAACTATTGTTTTTTTggtc
ttttgaaaaagaattttaccCAACCCAAGACATTATAATATGTATAAAAT
TTATATAAACGAAACAACATGTTGTGGAGATTTAGTATATTTACATATAT
ATATTATAGCTTTATTAGTATAAATCAAAGTAtccaattttcgaattttt
accaaatttttagAACCAAATAACCACGAAATTGTTATGAAAGATTATTT
ATCAAGATATCATAGATATTTATGTGAGAATTTACAGAAGAAACTTTATT
GTGTCATACACTTTTCTCGACAGATATTTGTTTGAATACATTCCtgtatt
taattttgaaattccgATTCCCTCTGATTGACATGATGCTGTAAACCTAC
AATCATGGAAAATATTtaagacaaaggggatttccctgcggaattttaaa
caccacaaatgattttaagcgctttaaactacagttggaaagtagagttt
taactatgAGTTTCAACATGAGACTatgaccttaggatctcaggatctga
aaactcaaatttgctccaataaggcttggaatatagcctagaagccaccg
aacccctccaaaatcgaaatattcaatgaaagaaagtggaagtgccaAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNACACTTTTCTCGACAGATATTTGTTTGAAAAC
ATTCCtgtatttaattttgaaattccgATTCCCTCTGATTGACATGATGC
TGTAAACCTACAATCATGGAAAATATTtaagacaaaggggatttccctgc
gaaattttaaacaccacaaatgattttaagcgctttaaactacagttgga
aagtagagttttaactatgAGTTTCAACATGAGactaggaccttaggatc
tcaggatctgaaaactcaaatttgctccaataaggcttggaatatagcct
agaagccaccgaacccctccaaaatcgaaatattcaatgaaagaaagtgg
aagtgcaaaaatagcaattctcgcccaaaCTTTACATTCTGATAAATGTT
AAAAAACACTTATAAAATACACATCTAAATATATTTCGACCTTGATTGTA
GGTCGGATGAAGTAGTATAATACatcattttttgttcattttctctCCAA
CTGTCAATAAACCCcaacttttaaaaattgatatgctttttttctttttc
agaaaatagagaTAAAAATAATCTTGACTGGTGAAATGTTTTTGCTTTGT
CAAAGGCCTCTAAGGTGAGTGAACGATCGAGATTCCTTCAAAACAAGGTA
ATTTTTTCCATCATGCCACTATTTCATTTCGTATTTAGTATGAACTAAAA
AGTAACGTTATGatgcaatgaaaaaaatatttttgctcttcATAGCAGCA
ATCTTACTATTCACCATATATAAATTGCGAACGAAATATCCTGAAGGCTT
GAATGCCCAGAGACAATATGGCGCTGGTTACGTAGTTACCAAAGATACGC
CAGATGATGAGTTAAGTTTTACGCGTGAGTTGAGTCGTCGGTTTGGAGTC
CGAAATCCTGATCCTGATAATCTTcagaaattgaccaaaaaaggTATCGA
TTTTGAACAGGAGACTGATCCTTTACCGGAATCTACTTAttgtgaaaaag
aaatctttttaacCGTTTTGGTGATCAGCAAACCTGAGAATTTTCAACGA
CGTAGGAACATTAGAGATACTTGGGCTCACAGTTACGaagatgattttca
aaaattgaaagggAAACATCCTTTTCCCAATGGGAAAACCTACTCCACTT
CAGATGTTGTTCGTGTAATTTTTGTTATTGGACAACCGAACGTGGAAGAT
GAAAATTTGAGTTCATCTTTGAAGGAGGAATCTCGACTGAGTAAAGATAT
TGTTTTCGGTAATATGATGGAAAATTACCGAAATTTAACCATGAAAACAA
AACTTGGTTTGAAATGGGCTTTTTATGAATGTAAAACGTCTTATGTTTTG
AAAACGGATGATGATGTTTTTGTAAATCCAGTGGTGCTTGTGGAATGGTT
AAAGAAAGCACCCAGAAAGAACTTGTATACTGGATGGTGTAATTCTAATT
CACCTGTAGATCGAAAACCAAACAGCAAGTGGTgagttttgaactttttt
aaaTACTGGTTGAAGTGGCGGACGTCGAACTTGGAACCAAGACACTTNGA
TCGAAACCCAAACAGCAAGTGGTGagttttatacttttttaaaaattggc
TGAAGTGGCGGACGTCGAACTTGGAACAAAGACACTCCATTTGCTGTGAT
ATGTAACCTTCTAACATATCATTAGGGACCTTAATTTAATACTTTACCTT
GTATTTATAGAAGGTTTTTGGATAgaattattcatgatattcgtggtgta
atgttttctacggaaatacctcGTCTTTAgacagtagtggcaaatttaaa
ctagacaaaagttgtataaaatttgccactactggcaaaaaccggggtct
ttccgtagaaaatattacgtaatgaatatcatgaattgaaaacTTGATTA
CTGTAATCAGTGGCACTTTACCTTATCGCCTCCAGGACTTTGACTCATCT
TTCAGTATTTTAGGCGTCNTTGAAAATCTAGaagtaccagtggatacccc
ttaaaacctacaaagttgcACTTCGGGCTCTCTTAGccaccaaacttaat
ttaataaTGTTcagttcacttttttacaacctcttaaATGTACTTTATca
taatcataaaaaaaaactaattttgagaatttcactTATCgcaaagtgtt
ataaaattcgaAGTTATCGAAATTTTTAGTTTCTCGGATTTAGAGATTAC
ACAATTGTATTTTagggtcataaaacctatacttttttgGTACCTACATT
TATGGCaggtatgaaaaaaatcattttctttttcatggtTGNTTATTTCC
AATGGAAGATTTGTACGTTGGTTTGATGATCAGAGAGTTAGATGGAGTTC
AACCGAGAGATGAAAGGAAACATTTCAACCTTGTTTATAATGGGAAGACT
GAAAATAGCTNCCCCAGAGAAATCTTAAGGCCCTCAAAGTTCTAatttag
gttttaaggtgtattttGATTCTAACATACAgtcttgaaaatatttaggt
ccCAATGATCTTATTGCAACATTAGTtactttgcagtgaatcactgttca
aaatttgagaccaaaaggacTATTATATAAAAAGCTTNAAACTGGGCAAA
CAAGCTAGATATGCATTGGTGAATTGTTGATCCTCTTCACTCACTCAATC
GGGTTGGATGTAataattttaaggatttttatgTATCATAGATATTTAAT
TTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057452-exon-scaffold_289-1491911889:37882..39051 | TCONS_00057452-exon-scaffold_289-1491911889:37882..39051 | Clytia hemisphaerica | exon |
| TCONS_00057452-exon-scaffold_289-1510915933:37882..39051 | TCONS_00057452-exon-scaffold_289-1510915933:37882..39051 | Clytia hemisphaerica | exon |
| TCONS_00057452-exon-scaffold_289-1575043694:37882..39051 | TCONS_00057452-exon-scaffold_289-1575043694:37882..39051 | Clytia hemisphaerica | exon |
| TCONS_00057452-exon-scaffold_289-1491911889:39456..39652 | TCONS_00057452-exon-scaffold_289-1491911889:39456..39652 | Clytia hemisphaerica | exon |
| TCONS_00057452-exon-scaffold_289-1510915933:39456..39652 | TCONS_00057452-exon-scaffold_289-1510915933:39456..39652 | Clytia hemisphaerica | exon |
| TCONS_00057452-exon-scaffold_289-1575043694:39456..39652 | TCONS_00057452-exon-scaffold_289-1575043694:39456..39652 | Clytia hemisphaerica | exon |
| TCONS_00057452-exon-scaffold_289-1491911889:44203..44534 | TCONS_00057452-exon-scaffold_289-1491911889:44203..44534 | Clytia hemisphaerica | exon |
| TCONS_00057452-exon-scaffold_289-1510915933:44203..44534 | TCONS_00057452-exon-scaffold_289-1510915933:44203..44534 | Clytia hemisphaerica | exon |
| TCONS_00057452-exon-scaffold_289-1575043694:44203..44534 | TCONS_00057452-exon-scaffold_289-1575043694:44203..44534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:37882..44534 + |
Blast
BLAST of TCONS_00057452 vs. Swiss-Prot (Human)
Match: B3GT1 (Beta-1,3-galactosyltransferase 1 OS=Homo sapiens GN=B3GALT1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 2.710e-31 Identity = 82/249 (32.93%), Postives = 128/249 (51.41%), Query Frame = 2
Query: 662 LAESTYCEKEV-FLTILVISQPKSVERRRFIRDTWARSYQEDFRKLKGKQPFPNGKTYSTSDXXXXXXXXGQSAQTDTKVMQSVKEESRMNKDIVFGSMMENYRNLTTKTKLGLKWAFYEC-KTSYVLKTDDDVFVNPVVLVEWL---KEIPKTNLYTGWCNFNSPVVRDKRNKWYISYEDYKEEKYPGYCLGGGYLISSDVLASVIKLSYGRFLFPMEDLYVGLMIRELDGVQPRDER--KHFNLVYN 1387
+ E CEK + FL IL+ + K + R+ IR+TW + +F+ +K F GK D + Q V++ES++ DI+ +++Y NLT KT +G++W C K YV+KTD D+FVN L+ L P+ +TG+ N +RD R+KWY+ + Y + YP +C G GY+ S+DV + K S L +ED+YVGL +R+L G+ P H+ + Y+
Sbjct: 67 INEPNKCEKNIPFLVILISTTHKEFDARQAIRETWGD--ENNFKGIKIATLFLLGK------------------NADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVGLCLRKL-GIHPFQNSGFNHWKMAYS 293
The following BLAST results are available for this feature:
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