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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057454 ID=TCONS_00057454|Name=TCONS_00057454|organism=Clytia hemisphaerica|type=transcript|length=2168bp
agataaaaaaataaacataaacaaaaaaaatgaaataaggcAGAAAATAT
CAGTACCACCACAGACGCTGACAAATTGATCATGAGACAACAATTTGTTA
TTGGTGTTATTTCTTTGATTGTCTTTCTCTATGTGGTGGAGGttacattt
ttctcttctcCAAAAATTGCACGTCAAAAAGTAATTAAACATGATCGGTT
TTGGTATAGAAAGCGTTTATATGCACACATGGCCTCtattaataataaaa
aaatgatggAAAGGTTCACAGATCTACATTTGAGTAGTGAACAAGCCATA
TTGGATGCCATGGAAGAGGAATTGAAGGAGCTGGAAAGCTTTGGTATCGA
TGTTGATGATTTTGAAGAACGCCCTATACCAGGTGCTCTAAAACGTGTCA
AATTACCGGCTACTCATATATCCATGGTGGGAGATGATGCTGAAGTTCAC
AGGCAACGAGATGCTCACGATAAGGAGGAATCTCTAAATCCAGAACCGAT
TACTGAAGCTACTAAGAGAGACAATGACTTGGTAACGGATGAGAGTGAAG
GAAATTTTACGCGTGAGTTAAGTCGTCGGTTTCGAGTTCGGGATCCTGAT
CCTGATGATCTCcagaaattgaccaaaaaaggTATCGATTTTGAACGGGA
GACTGATCCTTTAGCGGAATCTACTTATTGTGAAAAAGAAGtctttttga
ccattttggtGATTAGTCAACCTAAGAGTGTCGAACGGCGGAGGTTTATT
CGTGACACCTGGGCTCGAAGCTACCAAGAGGATTTTAGAAAGCTCAAAGG
GAAACAGCCTTTCCCTAATGGGAAAACCTATTCCACTTCAGATGTTGTAC
GTGTAGTTTTCGTTGTGGGTCAGTCAGCGCAAACTGATACCAAAGTAATG
CAATCAGTCAAAGAAGAATCTCGAATGAACAAAGATATTGTTTTTGGTAG
TATGATGGAGAATTACCGAAATTTAACCACGAAAACAAAACTTGGTTTGA
AATGGGCTTTTTATGAATGTAAAACGTCTTATGTTTTGAAAACGGATGAT
GATGTTTTTGTAAATCCAGTGGTGCTGGTGGAATGGTTGAAAGAGATCCC
GAAAACGAACTTGTATACTGGATGGTGTAACTTCAATTCACCTGTTGTAA
GGGATAAGCGCAATAAGTGGTATATTTCATATGAAGATTACAAGGAAGAG
AAGTACCCTGGATATTGTCTCGGCGGGGGCTATCTTATTTCCTCTGATGT
GTTAGCATCTGTAATCAAACTATCTTACGGTCGTTTTTTGTTTCCTATGG
AAGATTTATACGTTGGTTTGATGATCAGAGAGTTAGATGGAGTTCAACCG
AGAGACGAAAGGAAACATTTCAATCTTGTTTATAATGGGAAGACTGAAAA
TAGTTGTGATTTGAACTCTATATTTTTGTTGCATAGGGTACTTGGTCAAA
ACCTTGTCAAACACATCAATCAATCTAGAAATGCGCTAGAGAATTGTTGA
TTATAGTATTATTATTTCAGTTTTCTCCCTGATTTTGCTATATATTACAA
ATATATTGAAAGACCTTTTTTCCATAGCTCTATAGATGTATTCAATCAGT
GAAATCCCAAAATTTACTTTGATGCAGATCTTCCGCTTGCGTTGAACAGT
AATGGGGACTTAGGAGTTggttattttttgtaattttaaggttttttaat
tatcttttaatgtttttttaagtttttaccgtatgttttttatgtttttg
actTATTTTTCGATTTCGGACATACTTTTTATATTATTTGTATGCTGTTT
TTATGtacctgtttttttttgtttgaatgcGATGTCAAATGCTTTATCTT
TTTTCAGCTTTGCTTTTTGTGTGTCTTATTGCCAACTATTGTTTTTTTgg
tcttttgaaaaagaattttaccCAACCCAAGACATTATAATATGTATAAA
ATTTATATAAACGAAACAACATGTTGTGGAGATTTAGTATATTTACATAT
ATATATTATAGCTTTATTAGTATAAATCAAAGTAtccaattttcgaattt
ttaccaaatttttagAACCAAATAACCACGAAATTGTTATGAAAGATTAT
TTATCAAGATATCATAGATATTTATGTGAGAATTTACAGAAGAAACTTTA
TTGTGTCATACACTTTTC Run BLAST on NCBI transcript from alignment at scaffold_289:37883..41247+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057454 ID=TCONS_00057454|Name=TCONS_00057454|organism=Clytia hemisphaerica|type=transcript|length=3365bp|location=Sequence derived from alignment at scaffold_289:37883..41247+ (Clytia hemisphaerica)
agataaaaaaataaacataaacaaaaaaaatgaaataaggcAGAAAATAT
CAGTACCACCACAGACGCTGACAAATTGATCATGAGACAACAATTTGTTA
TTGGTGTTATTTCTTTGATTGTCTTTCTCTATGTGGTGGAGGttacattt
ttctcttctcCAAAAATTGCACGTCAAAAAGTAATTAAACATGATCGGTT
TTGGTATAGAAAGCGTTTATATGCACACATGGCCTCtattaataataaaa
aaatgatggAAAGGTTCACAGATCTACATTTGAGTAGTGAACAAGCCATA
TTGGATGCCATGGAAGAGGAATTGAAGGAGCTGGAAAGCTTTGGTATCGA
TGTTGATGATTTTGAAGAACGCCCTATACCAGGTGCTCTAAAACGTGTCA
AATTACCGGCTACTCATATATCCATGGTGGGAGATGATGCTGAAGTTCAC
AGGCAACGAGATGCTCACGATAAGGAGGAATCTCTAAATCCAGAACCGAT
TACTGAAGCTACTAAGAGAGACAATGACTTGGTAACGGATGAGAGTGAAG
GAAATTTTACGCGTGAGTTAAGTCGTCGGTTTCGAGTTCGGGATCCTGAT
CCTGATGATCTCcagaaattgaccaaaaaaggTATCGATTTTGAACGGGA
GACTGATCCTTTAGCGGAATCTACTTATTGTGAAAAAGAAGtctttttga
ccattttggtGATTAGTCAACCTAAGAGTGTCGAACGGCGGAGGTTTATT
CGTGACACCTGGGCTCGAAGCTACCAAGAGGATTTTAGAAAGCTCAAAGG
GAAACAGCCTTTCCCTAATGGGAAAACCTATTCCACTTCAGATGTTGTAC
GTGTAGTTTTCGTTGTGGGTCAGTCAGCGCAAACTGATACCAAAGTAATG
CAATCAGTCAAAGAAGAATCTCGAATGAACAAAGATATTGTTTTTGGTAG
TATGATGGAGAATTACCGAAATTTAACCACGAAAACAAAACTTGGTTTGA
AATGGGCTTTTTATGAATGTAAAACGTCTTATGTTTTGAAAACGGATGAT
GATGTTTTTGTAAATCCAGTGGTGCTGGTGGAATGGTTGAAAGAGATCCC
GAAAACGAACTTGTATACTGGATGGTGTAACTTCAATTCACCTGTTGTAA
GGGATAAGCGCAATAAGTGGTATGATGTTTCTTCTTATtcacttttttat
tgttttcgcTCACTAGCTCACTCACTAAGAGAAAGGTTGGCTCTCTGTTT
TAGAATGCTTTCAAGAATATTAGAATTAGAATATAAAATCCTTTCAAGTT
GAAAATACCTCATTAGCTCATtatggcctttttcgacgaaatTCTTCTCG
AATTAGGTTCTGAGTTACAATTTGAAAATCGAAAGTCATTACCGTAATAT
AACTTGCTTATTTCTTGCACggcattttaaaacaaaagaagaacgACTTC
CTCCGGGTGAACACAATCGGAAAACCTGTTTAGTCAGCATAAGTTGTGCG
CTTGCTTTTGTTTATCACTAAAATTATTGTCTTTAATCTTCCTAATCGTT
ATGATATTTCTTCTCACTTTCAGGTATATTTCATATGAAGATTACAAGGA
AGAGAAGTACCCTGGATATTGTCTCGGCGGGGGCTATCTTATTTCCTCTG
ATGTGTTAGCATCTGTAATCAAACTATCTTACGGTCGTTTTTTGTTTCCT
ATGGAAGATTTATACGTTGGTTTGATGATCAGAGAGTTAGATGGAGTTCA
ACCGAGAGACGAAAGGAAACATTTCAATCTTGTTTATAATGGGAAGACTG
AAAATAGTTGTGATTTGAACTCTATATTTTTGTTGCATAGGGTACTTGGT
CAAAACCTTGTCAAACACATCAATCAATCTAGAAATGCGCTAGAGAATTG
TTGATTATAGTATTNAATTCACCTGTTGTAAGGGATAAGCGCAATAAGTG
GTATGATGTTTCTTCTTATtcacttttttattgttttcgcTCACTAGCTC
ACTCACTGAGAGAAAGGTTGGCTCTCTGTTTTAGAATGCTTTCAAGAATA
TTAGAATTTGAATATAAAATCCTTTCAAGTTGAAAATACCTCATTATGGC
CTTTTTCGACTGAATTCTTCTCGAATTAGGTTCTGAGTTACAAATTGAAA
ATCGAAAGTCATTACGTAATATAACTTGCTTATAACTTATGTAGCATCGT
GCATTTCTTGCACggcattttaaaacaaaagaagaacgACTTCCTCCGGG
TGAACAAAATTGGAAAACCTGTTTAGTCAGCATAAGTTGTGCGCTTGCTT
TTGTTTATCATTAAAATTGTTGTCTTTAATCTTCCTAATCGTTATGATAT
TTCTTCTCACTTTCAGGTATATTTCATATGAAGATTACAAGGAAGAGAAG
TACCCTGGATATTGTCTCGGCGGGGGCTATCTTATTTCCTCTGATGTGTT
AGCATCTGTAATCAAACTATCTTACGGTCGTTTTTTGTTTCCTATGGAAG
ATTTATACGTTGGTTTGATGATCAGAGAGTTAGATGGAGTTCAACCGAGA
GACGAAAGGAAACATTTCAATCTTGTTTATAATGGGAAGACTGAAAATAG
TTGTGATTTGAACTCTATATTTTTGTTGCATAGGGTACTTGGTCAAAACC
TTGTCAAACACATCAATCAATCTAGAAATGCGCTAGAGAATTGTTGATTA
TAGTATTATTATTTCAGTTTTCTCCCTGATTTTGCTATATATTACAAATA
TATTGAAAGACCTTTTTTCCATAGCTCTATAGATGTATTCAATCAGTGAA
ATCCCAAAATTTACTTTGATGCAGATCTTCCGCTTGCGTTGAACAGTAAT
GGGGACTTAGGAGTTggttattttttgtaattttaaggttttttaattat
cttttaatgtttttttaagtttttaccgtatgttttttatgtttttgact
TATTTTTCGATTTCGGACATACTTTTTATATTATTTGTATGCTGTTTTTA
TGtacctgtttttttttgtttgaatgcGATGTCAAATGCTTTATCTTTTT
TCAGCTTTGCTTTTTGTGTGTCTTATTGCCAACTATTGTTTTTTTggtct
tttgaaaaagaattttaccCAACCCAAGACATTATAATATGTATAAAATT
TATATAAACGAAACAACATGTTGTGGAGATTTAGTATATTTACATATATA
TATTATAGCTTTATTAGTATAAATCAAAGTAtccaattttcgaattttta
ccaaatttttagAACCAAATAACCACGAAATTGTTATGAAAGATTATTTA
TCAAGATATCATAGATATTTATGTGAGAATTTACAGAAGAAACTTTATTG
TGTCATACACTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057454-exon-scaffold_289-1491911889:37883..39051 | TCONS_00057454-exon-scaffold_289-1491911889:37883..39051 | Clytia hemisphaerica | exon |
| TCONS_00057454-exon-scaffold_289-1510915933:37883..39051 | TCONS_00057454-exon-scaffold_289-1510915933:37883..39051 | Clytia hemisphaerica | exon |
| TCONS_00057454-exon-scaffold_289-1575043694:37883..39051 | TCONS_00057454-exon-scaffold_289-1575043694:37883..39051 | Clytia hemisphaerica | exon |
| TCONS_00057454-exon-scaffold_289-1491911889:40249..41247 | TCONS_00057454-exon-scaffold_289-1491911889:40249..41247 | Clytia hemisphaerica | exon |
| TCONS_00057454-exon-scaffold_289-1510915933:40249..41247 | TCONS_00057454-exon-scaffold_289-1510915933:40249..41247 | Clytia hemisphaerica | exon |
| TCONS_00057454-exon-scaffold_289-1575043694:40249..41247 | TCONS_00057454-exon-scaffold_289-1575043694:40249..41247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:37883..41247 + |
Blast
BLAST of TCONS_00057454 vs. Swiss-Prot (Human)
Match: B3GT1 (Beta-1,3-galactosyltransferase 1 OS=Homo sapiens GN=B3GALT1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 8.774e-31 Identity = 84/267 (31.46%), Postives = 134/267 (50.19%), Query Frame = 1
Query: 661 LAESTYCEKEV-FLTILVISQPKSVERRRFIRDTWARSYQEDFRKLKGKQPFPNGKTYSTSDXXXXXXXXGQSAQTDTKVMQSVKEESRMNKDIVFGSMMENYRNLTTKTKLGLKWAFYEC-KTSYVLKTDDDVFVNPVVLVEWL---KEIPKTNLYTGWCNFNSPVVRDKRNKWYISYEDYKEEKYPGYCLGGGYLISSDVLASVIKLSYGRFLFPMEDLYVGLMIRELDGVQPRDER--KHFNLVYNGKTENSCDLNSIFLLHRV 1440
+ E CEK + FL IL+ + K + R+ IR+TW + +F+ +K F GK D + Q V++ES++ DI+ +++Y NLT KT +G++W C K YV+KTD D+FVN L+ L P+ +TG+ N +RD R+KWY+ + Y + YP +C G GY+ S+DV + K S L +ED+YVGL +R+L G+ P H+ + Y + C + +H++
Sbjct: 67 INEPNKCEKNIPFLVILISTTHKEFDARQAIRETWGD--ENNFKGIKIATLFLLGK------------------NADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVGLCLRKL-GIHPFQNSGFNHWKMAY-----SLCRYRRVITVHQI 306
The following BLAST results are available for this feature:
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