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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057459 ID=TCONS_00057459|Name=TCONS_00057459|organism=Clytia hemisphaerica|type=transcript|length=1676bp
CTATGACCAGACATAATTTTGCAAATCAGGAGGCTTAACGAATGTTAGAG
GAAATTCTTTAATTCTAATATGTACACGAATTTActaacttttttacttt
ttacaaaaaaatcaacaattaaggataaaataagcataaattaaaggaga
aaaagtatttttaaaaatgctaaaattgAAAAGTCATGGAAGAAAAAAAT
GCTATGGCTTAATACTTTAAAGTATAGTATTAAATATAAGTAGGTAAGCA
TTActagaaaaagttaaaatataaaGCTATTATTATACGTAGAAAATAGC
GCAACCTTTTTCAGTGCAAGTCTTAGCTACCCCGTTGGGTAAATAATCCA
CACTCTTAGAGTTGCTAGTATGTTCACCGACGTAACAAGCACCGCAATTT
GAAATGTCAGTGGTCTGCTCATCATACTCTAAACTATTGTCTAGTTTGAA
CACGCATGCGCAACGCTCACATTGAAAAACAGCGTTTGTACCGTCTTCTG
ATATTAACAAAACTTCCGAATTTGGATGACGTATTATACATGTTCGGCAA
CCGTGCTTTTCGTCATATTCACTATGGCACCGAAAACAATGCGTAGTTTT
ACCGCTGAATTTACTCGCCGGTAATAGTGAACTCAATGTTTTAATATTTC
GAGGTTTCTTTGACATTAAGCATGACTTTAATTGTTCTTTTAATACTTCT
CCGTCAATATGATCCAATACATTTGCTAATCGTTCAAAATCATACATATA
GTCGCGGCTAGCTTTCGAAGCACTGCTGAAGGACGAGAACTCGGAAGTTC
CGTACGTGCTATCAACGGAGACCATGCTTGCTTGCTCAGAACGTAAAGAC
GGAACGTCACTCATAGGCGAAGAGCTACGCATTGATTCGTCGTAAAGCTC
CGAGGAAACGTTCGATATAGCGTCATCGGGGAATTCAGAAGCGAAACTGA
CTTCACTTTCGGTACAATCGATTTCACTAATaatcttcttctttttgatT
GGCTGGCTCTTCTTATTTTTGagattcttcttcttttcatttttattttt
cgtaaCACTgttgttattgttattgttgttgcCATGACGCGTACTATATC
GCGTCGGatagctaccattttgaagtttcaatGAACTACCTGTTTTAGTC
AGCCTCTTAAACGGTGATTGTGTGACGCGACGAGGAGCTGGTGTCAACGG
TTGTTTGATCATCAAAACTTCATCCTCGTTGAGATCTTCATTATCCGACA
TTTTACTTAGACTAGCATACCAGGTATCAATTCGACTCTCCATAGCAACG
ACATCAGTTTCAGGGATAGATTCCACGTTCGTTGACATTGTATTCAAACC
CCGATTCGGAATAGTAGACGAAGTATCAGACTCGCATAAACTGTTTGATG
ATTTACTCAAGGCTAATGAAACTTTCTCTGGGAAACACCCAGGAGGTAAT
GGCATTTCCAATTGTCTACTACTACTGCTGATCTTCCGTTGCTTTGGTAA
CTTCTTGACAATTCCGTCCGATAAGTTGTTCAGAAAATCGATGCGAGCAT
TGAAACAGGAAATCTGTGGACGTCtctcaattttgtatttttgttctGTT
CGCATCCAGTCCATAGTTCGTGATGctgatttcattattttttttctatt
gtctttttttaatgataaaCTAAGaa Run BLAST on NCBI transcript from alignment at scaffold_289:95013..96752+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057459 ID=TCONS_00057459|Name=TCONS_00057459|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at scaffold_289:95013..96752+ (Clytia hemisphaerica)
CTATGACCAGACATAATTTTGCAAATCAGGAGGCTTAACGAATGTTAGAG
GAAATTCTTTAATTCTAATATGTACACGAATTTActaacttttttacttt
ttacaaaaaaatcaacaattaaggataaaataagcataaattaaaggaga
aaaagtatttttaaaaatgctaaaattgAAAAGTCATGGAAGAAAAAAAT
GCTATGGCTTAATACTTTAAAGTATAGTATTAAATATAAGTAGGTAAGCA
TTActagaaaaagttaaaatataaaGCTATTATTATACGTAGAAAATAGC
GCAACCTTTTTCAGTGCAAGTCTTAGCTACCCCGTTGGGTAAATAATCCA
CACTCTTAGAGTTGCTAGTATGTTCACCGACGTAACAAGCACCGCAATTT
GAAATGTCAGTGGTCTGCTCATCATACTCTAAACTATTGTCTAGTTTGAA
CACGCATGCGCAACGCTCACATTGAAAAACAGCGTTTGTACCGTCTTCTG
ATATTAACAAAACTTCCGAATTTGGATGACGTATTATACATGTTCGGCAA
CCGTGCTTTTCGTCATATTCACTATGGCACCGAAAACAATGCGTAGTTTT
ACCGCTGAATTTACTCGCCGGTAATAGTGAACTCAATGTTTTAATATTTC
GAGGTTTCTTTGACATTAAGCATGACTTTAATTGTTCTTTTAATACTTCT
CCGTCAATATGATCCAATACATTTGCTAATCGTTCAAAATCATACATATA
GTCGCGGCTAGCTTTCGAAGCACTGCTGAAGGACGAGAACTCGGAAGTTC
CGTACGTGCTATCAACGGAGACCATGCTTGCTTGCTCAGAACGTAAAGAC
GGAACGTCACTCATAGGCGAAGAGCTACGCATTGATTCGTCGTAAAGCTC
CGAGGAAACGTTCGATATAGCGTCATCGGGGAATTCAGAAGCGAAACTGA
CTTCACTTTCGGTACAATCGATTTCACTAATaatcttcttctttttgatT
GGCTGGCTCTTCTTATTTTTGagattcttcttcttttcatttttattttt
cgtaaCACTgttgttattgttattgttgttgcCATGACGCGTACTATATC
GCGTCGGatagctaccattttgaagtttcaatGAACTACCTGTTTTAGTC
AGCCTCTTAAACGGTGATTGTGTGACGCGACGAGGAGCTGGTGTCAACGG
TTGTTTGATCATCAAAACTTCATCCTCGTTGAGGTCTTCACTATCCGACA
TTTTACTCNAACGGTTGTTTGATCATCAAAACTTCATCCTCGTTCAGATC
TTCATTATCCGACATTTTACTTAGACTAGCATACCAGGTATCAATTCGAC
TCTCCATAGCAACGACATCAGTTTCAGGGATAGATTCCACGTTCGTTGAC
ATTGTATTCAAACCCCGATTCGGAATAGTAGACGAAGTATCAGACTCGCA
TAAACTGTTTGATGATTTACTCAAGGCTAATGAAACTTTCTCTGGGAAAC
ACCCAGGAGGTAATGGCATTTCCAATTGTCTACTACTACTGCTGATCTTC
CGTTGCTTTGGTAACTTCTTGACAATTCCGTCCGATAAGTTGTTCAGAAA
ATCGATGCGAGCATTGAAACAGGAAATCTGTGGACGTCtctcaattttgt
atttttgttctGTTCGCATCCAGTCCATAGTTCGTGATGctgatttcatt
attttttttctattgtctttttttaatgataaaCTAAGaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057459-exon-scaffold_289-1491911889:95013..96245 | TCONS_00057459-exon-scaffold_289-1491911889:95013..96245 | Clytia hemisphaerica | exon |
| TCONS_00057459-exon-scaffold_289-1510915933:95013..96245 | TCONS_00057459-exon-scaffold_289-1510915933:95013..96245 | Clytia hemisphaerica | exon |
| TCONS_00057459-exon-scaffold_289-1575043694:95013..96245 | TCONS_00057459-exon-scaffold_289-1575043694:95013..96245 | Clytia hemisphaerica | exon |
| TCONS_00057459-exon-scaffold_289-1491911889:96310..96752 | TCONS_00057459-exon-scaffold_289-1491911889:96310..96752 | Clytia hemisphaerica | exon |
| TCONS_00057459-exon-scaffold_289-1510915933:96310..96752 | TCONS_00057459-exon-scaffold_289-1510915933:96310..96752 | Clytia hemisphaerica | exon |
| TCONS_00057459-exon-scaffold_289-1575043694:96310..96752 | TCONS_00057459-exon-scaffold_289-1575043694:96310..96752 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:95013..96752 + |
Blast
The following BLAST results are available for this feature:
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