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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057463 ID=TCONS_00057463|Name=TCONS_00057463|organism=Clytia hemisphaerica|type=transcript|length=1359bp
AAAAGGGTTTACTAAGcattaaatttcttttgttttttatcaatAGAGTT
TATTGAATAAAGAAACTCGCTACGttattttttcaacaattttttgaaaa
tttttgtaagaGAAGTTTACTATATGGAAGAGATTCTTTTTGATGAGAGA
AGTGAAAAGACAAGACGCGAACCATGAAAGATGAGTATTTTTTATCTGTT
CACTTtacaaaattgaaatatataaCATACCTACACATGTGTTTTGACGC
TTTTTCACTTTATAATCACAAGAGCATGAAAAACATATTGGGATATTTTA
GCGAAATTTGTAACATAAGTATTATTGAATGAGATGgaaaagtgAAGTGC
AAACCCGGAAGAGAAACGTCATCTACATGTCTACATCTCTACAAGTCGTC
TTCAaaagGAGACTGATAGACCGAACGCAAGAAAGAAAGAACTGTTTGCC
TGAGATGCCAAGACTAATGGTAGAAGTTAGGACATGGAAATCGTTTATCG
TGTACGGTAGCAAGATTTTGACGGTGGAGCCGCTTCCACTCGGTTTTGCT
TTACTTGCTCCTCGAATACTATCCAACAGACAGAGCTGATTACCTGTATG
CATGGCAATCTAGCACCGGATCGTCTTCAAAGACACTTGTTGTAATGATT
CTCATTACGAAAGCTTTAACAATGCAGTAAAAGGACTTCAGAATTTCTAC
CCAGCGATTTCGACACCTCTATGTCACAGAGCCGCTGGGACCCCCGccca
actggaaaatttgacaaaaatttcgtgcCGGTAGgaaaaaaacctgaaat
ttcGGTCCCACtgctgggaaattgactttgattcctTCCCCATTCGAAAT
AAACTATTCGCACTGAAATTCTTATCCCcaatgaggaaaaaagttccacc
ggggctgtgagacagggctgTATTTCATTTTGTGGTTTATTTTATAACTA
CTATCGAATTTTTAGAACTTTTGTAGAGCttattttttgttaataattta
GATACAGTTCGTTTTcgtacttttcaaactttttttcagtgCAATCGAAT
GACCATATAATTGGGTTTCTTTTTTGTAGTTCTATTGTACCTTAAATTTA
ACCATACCTTCATCGAGCAAAGTCTCGCATACACTAAGGATTTTAacttg
aaattgtttttgaatggaATATTTGCGTACAGATAAATAAAGGTGTATAC
ATGTTAATATTTTCGTTAATTGTTATTACTCTTAAAGATGTATATATGAA
AGGCTTTCAACAGGCCTACTTTATTTTTGTTGATGATAGGatccaaaaat
ctcaaattcgCTGCCGAACTTGAGATTTTTGCGGCTTTTTAATCACGGAG
AAAAGATGA Run BLAST on NCBI transcript from alignment at scaffold_289:360138..363723+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057463 ID=TCONS_00057463|Name=TCONS_00057463|organism=Clytia hemisphaerica|type=transcript|length=3586bp|location=Sequence derived from alignment at scaffold_289:360138..363723+ (Clytia hemisphaerica)
AAAAGGGTTTACTAAGcattaaatttcttttgttttttatcaatAGAGTT
TATTGAATAAAGAAACTCGCTACGttattttttcaacaattttttgaaaa
tttttgtaagaGAAGTTTACTATATGGAAGAGATTCTTTTTGATGAGAGA
AGTGAAAAGACAAGACGCGAACCATGAAAGATGAGTATTTTTTATCTGTT
CACTTtacaaaattgaaatatataaCATACCTACACATGTGTTTTGACGC
TTTTTCACTTTATAATCACAAGAGCATGAAAAACATATTGGGATATTTTA
GCGAAATTTGTAACATAAGTATTATTGAATGAGATGGTATGGCCAAGcat
aaattttaaattcataaatgcgtggaaacaatttgtagtcatgtgctacc
taaattgtgcagactaccgggttACCTTAATGGAGAGGCCCGTttgcttc
tacaaaaccttagaaagataacTGTAAAATTGGCAAGTCAGTgtagaaac
aatttgtagtcatgtgctacctaaattgtgcagactaccgggctacctta
atggagaggcccgtttgcttctacaaaaccttagaaagataacagGAACA
TCGGCaagtcagtgtggaaacaatttgtagtcatgtgctacctaaattgt
gtaGACTACcaggctaccttaatggagcagcccgtttgtttctacaaacC
CTTAGAAAGATAACAGGAACATCGGCaagtcagtgtggaaacaatttgta
gtcatgtgctacctaaattgtgtaGACTACcaggctaccttaatggagca
gcccgtttgtttctacaaacCCTTAGAAAGATAACAGGAACATCGGCaag
tcagtgtggaaacaatttgtagtcatgtgctacctaaattgtgtaGACTA
CcaggctaccttaatggagcagcccgtttgtttctacaaacCCTTAGAAA
GATAACAGGAACATCGGCaagtcagtgtggaaacaatttgtagtcatgtg
ctacctaaattgtgtaGACTACcaggctaccttaatggagcagcccgttt
gtttctacaaacCCTTAGAAAGATAACAGGAACATCGGCaagtcagtgtg
gaaacaatttgtagtcatgtgctacctaaattgtgtaGACTACcaggcta
ccttaatggagcagcccgtttgtttctacaaacCCTTAGAAAGATAACAG
GAACATCGGCaagtcagtgtggaaacaatttgtagtcatgtgctacctaa
attgtgtaGACTACcaggctaccttaatggagcagcccgtttgtttctac
aaacCCTTAGAAAGATAACAGGAACATCGGCaagtcagtgtggaaacaat
ttgtagtcatgtgctacctaaattgtgtaGACTACcaggctaccttaatg
gagcagcccgtttgtttctacaaaaccttagaaagataacTGTAAAattg
gcaagtcagtgtggaaacaatttgtagtcatgtgctacctaaattgtgca
gactaccaggctaccttaatggagcagcccgtttgtttctacaaaacctt
agaaagataacagGAACATCGGCaagtcagtgtggaaacaatttgtagtc
atgtgctacctaaattgtgcagactaccgggctaccttaatggagcagcc
cgtttgtttctacaaaaccttagaaagataacagtaacattggcacgcat
tggcaagtcagtgtggaaacaatttgtagtcatgtgctacctaaattgtg
cagactaccgggctaccttaatggaaaggcccgtttgtttctacaaaacc
ttagaaagataacagtaacattggcacgcattggcaagtcagtgtggaaa
caatttgtagtcatgtgctacctaaattgtgcagactaccgggctacctt
aatggagcagcccatttgtttctacaaaaccttagaaagataacagtaac
attggcacacattggcaagtcagtgtggaaacaatttgtagtcatttgct
acctaaattgtgcagactaccgggctaccttaatggaaaggcccgtttgc
ttctacaaaaccttagaaagattaCTGTAACATTTGGCAAGTTAGTGTga
aaacaatttgtagtcatgtgctacctaaattgtgcaggctaccgggctac
cttaatggagagGCCCGTTTGCTTCTACAATAAACCTTAGAAATATTACT
GTAACATTTGGCAAGTtagtgtggaaacaatttgcattcatgtgctacct
aaattgtgtaGACTActgggctaccttaatggagcagCCCGTTTGCTTCT
GCGTAAAAACCTTGAAtactattttggactttttttctGGTACAAGCCAC
TTATATTTAAATCAAAGCTCTtcgtatttttttttcaggaaaagtgAAGT
GCAAACCCGGAAGAGAAACGTCATCTACATGTCTACATCTCTACAAGTCG
TCTTCAaaaggtaagaaaatttttgtaattgtTTACCCAGCACCTTCAAT
ATTTGCGTCTTCATTACTCCAATTACAAAATCTCTTCAGAGTCATTTAGC
AAACGTAGGTGGAAAGAAGCAATTACTTATCTTTGAGCTATGTTGGCTTG
TGAAGTCTAATATATTCTAATTTCCTTTTCTACAGGAGACTGATAGACCG
AACGCAAGAAAGAAAGAACTGTTTGCCTGAGATGCCAAGACTAATGGTAG
AAGTTAGGACATGGAAATCGTTTATCGTGTACGGTAGCAAGATTTTGACG
GTGGAGCCGCTTCCACTCGGTTTTGCTTTACTTGCTCCTCGAATACTATC
CAACAGACAGAGCTGATTACCTGTATGCATGGCAATCTAGCACCGGATCG
TCTTCAAAGACACTTGTTGTAATGATTCTCATTACGAAAGCTTTAACAAT
GCAGTAAAAGGACTTCAGAATTTCTACCCAGCGATTTCGACACCTCTATG
TCACAGAGCCGCTGGGACCCCCGcccaactggaaaatttgacaaaaattt
cgtgcCGGTAGgaaaaaaacctgaaatttcGGTCCCACtgctgggaaatt
gactttgattcctTCCCCATTCGAAATAAACTATTCGCACTGAAATTCTT
ATCCCcaatgaggaaaaaagttccaccggggctgtgagacagggctgTAT
TTCATTTTGTGGTTTATTTTATAACTACTATCGAATTTTTAGAACTTTTG
TAGAGCttattttttgttaataatttaGATACAGTTCGTTTTcgtacttt
tcaaactttttttcagtgCAATCGAATGACCATATAATTGGGTTTCTTTT
TTGTAGTTCTATTGTACCTTAAATTTAACCATACCTTCATCGAGCAAAGT
CTCGCATACACTAAGGATTTTAacttgaaattgtttttgaatggaATATT
TGCGTACAGATAAATAAAGGTGTATACATGTTAATATTTTCGTTAATTGT
TATTACTCTTAAAGATGTATATATGAAAGGCTTTCAACAGGCCTACTTTA
TTTTTGTTGATGATAGGatccaaaaatctcaaattcgCTGCCGAACTTGA
GATTTTTGCGGCTTTTTAATCACGGAGAAAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057463-exon-scaffold_289-1491911889:360138..360473 | TCONS_00057463-exon-scaffold_289-1491911889:360138..360473 | Clytia hemisphaerica | exon |
| TCONS_00057463-exon-scaffold_289-1510915933:360138..360473 | TCONS_00057463-exon-scaffold_289-1510915933:360138..360473 | Clytia hemisphaerica | exon |
| TCONS_00057463-exon-scaffold_289-1575043694:360138..360473 | TCONS_00057463-exon-scaffold_289-1575043694:360138..360473 | Clytia hemisphaerica | exon |
| TCONS_00057463-exon-scaffold_289-1491911889:362526..362597 | TCONS_00057463-exon-scaffold_289-1491911889:362526..362597 | Clytia hemisphaerica | exon |
| TCONS_00057463-exon-scaffold_289-1510915933:362526..362597 | TCONS_00057463-exon-scaffold_289-1510915933:362526..362597 | Clytia hemisphaerica | exon |
| TCONS_00057463-exon-scaffold_289-1575043694:362526..362597 | TCONS_00057463-exon-scaffold_289-1575043694:362526..362597 | Clytia hemisphaerica | exon |
| TCONS_00057463-exon-scaffold_289-1491911889:362773..363723 | TCONS_00057463-exon-scaffold_289-1491911889:362773..363723 | Clytia hemisphaerica | exon |
| TCONS_00057463-exon-scaffold_289-1510915933:362773..363723 | TCONS_00057463-exon-scaffold_289-1510915933:362773..363723 | Clytia hemisphaerica | exon |
| TCONS_00057463-exon-scaffold_289-1575043694:362773..363723 | TCONS_00057463-exon-scaffold_289-1575043694:362773..363723 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:360138..363723 + |
Blast
The following BLAST results are available for this feature:
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