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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057480 ID=TCONS_00057480|Name=TCONS_00057480|organism=Clytia hemisphaerica|type=transcript|length=227bp
CGTAAATGGCAGAAAAGAACATCTTGCATTTCAATTACGATTTTCAGGAA
GATAATGCCAGCAATACTACTGAGGagaccaatatggacactgattTTGT
ACCGCTCATAAGTTCGTATTTAAAGTCAGAAGAATTCGATCCTTGTTCTT
TTCAGCAGCAGTTGAATCTTCCAAATGCCGGTGGGTATAATAACAGCACC
ACCAGTGGTGGTGGCGGTGGTGGTGNA Run BLAST on NCBI transcript from alignment at scaffold_289:301440..308632- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057480 ID=TCONS_00057480|Name=TCONS_00057480|organism=Clytia hemisphaerica|type=transcript|length=7193bp|location=Sequence derived from alignment at scaffold_289:301440..308632- (Clytia hemisphaerica)
CGTAAATGGCAGAAAAGAACATCTTGCATTTCAATTACGATTTTCAGGTA
AGATTATTGGTTACGTATTATGTTAATTGAAAACCATATTGAGATGTACT
AGACACGGCCCAAAAATTATATATGCGATCTTAACAATTTCCCAGCTGGC
ACACAACGTTGTTTCAACGTTTATCTAACGTTCACAATGTCCATTTAACG
TTAGGTGAACGTTGAAACAACGTTGTGTGCCAGCTGGGTTATCACTCGGG
CAAGTCAAAGCTTGTCAAAGCTTGTACAAAAGATTAACAAACAAAATAAA
TATGGAACGACTAGTTGTTTATCTTGTTTTTGGTCATTTTTTTTGTCAAT
TTCCACGGTTTGAGTGTGATTGATTCTATTTTATTTATTTTTATCCAAAA
CCCCTCCTTATTTCCCTGGACCTATGTATTATGACTCTATGAGTCATAGA
CTCTATACGTTGTAAATTTGTTCGTTGATATTGAAGTACTTTTCCGGTAT
ATAGACGGGTTTACAAAAATTCATGATTGTGGTTTGGGTTCTTTCGTAAG
TTTGCTGATGCTTTTTTAGATGTAACGGTTTTCATAAGGGTGTTGACCTT
CTAGTGGTTTACATAGTCATCCTAGGATTGATTTTCAATCGGGATTTGAA
AAAAAAACATCGCATGCGTACTCTCAATACAATCTTTCCTCTATAGCAAA
ACATAGAAAAAAAGCGCCGACATCTAGCCGAAAAGCTTGCCGATTCTAGG
GTCTACCATACCGTTTACACGTTTCTTTTATAAGAACATTCATTTAAGCC
TTCGGATGTTCTTATCTTTTTGAGTTTTAAGCCTGAAACATGTTCTTATT
TTCACCATTTCTCGAGCATTTATCTAGGTTTTGCAATCTTTAAACATTAT
AGACTTTTGCTTGTCTAATTTAGTTTTGATCTTGGATATTTAGGGAAGAT
TTTTAGATTGATGCTTGCGTCTATACAACTACAACTACAGGAGCTTTTTA
TATAAATAGGTCAGTCAAGTTTGAGGGATTATAGACCCCTTTTGATAATG
CTAGGACAGAAAATATATATTGCTTCATGAATTTTCTACCTCGTTCGATT
TTTAGATTATAAAGTCAATATTTATACAATCAAATAATAACTTTGCAACA
TATAAGTAGTTTGGAGAGAAACATATATCTCCTCGGATGACGTCACCATA
AGTTCATTGTATGACCAATCAGCGTTTTTGTGTGGCATATTTGCTAAGTG
ACAAAGTGGGAAGAGAGGGGCTGGAAGTCGTGGGCGAAATTAACAATGAT
TGCTGTCTATCCAAGCAAAGTTTTTTATGATCTCATGATTAATAATTTGG
GATCATATTTTGAGAATTGAGTGTCAAATATTTGAATATTTTAAACATTA
TTATATTTTCCCTGGTCAGCTTCCCAAGATTTTCTATGAAAATAGAATTA
CGGCCAAGCCCATTGAGTTTAAAGCCTGAAGGGCTAGACTAGAATCTCTA
ACATTTCCAAGGCAAGAAAAAGAAATCTGCGCTTAGAACACGCCGTAATC
ATGACGATGAATTGTATCTAGTGGTTCCCTTGTTTTTGAGGATGCATTTT
TTGAAATCTAGTGATAGATTTTAGTTTTAATCCGGCATTCGTGTAAAAAC
CAAATGCGCGCGTTCTGGATAGGAAATAAGTGGCTTCATTTCCCATGCAG
GAGTCTCGAGTATAGCCCTTCGGGTTTGGAAATCAATGGCAAAGGTATAC
ATAGCTTCTAAACCGTTTTTACTCGGCGAAAATCTTTTTAAGTACAGTTT
ATCGTGATTCGATAAGCGCTTTGTTTATTTCTTCTGCTCTCATTTTCCAC
TCTTTGAATTTTCTGATTTTCTTAAGATCTGCTTTATCTTCACATAATTT
TCAATCAATTTCTTCATGAATTTTCCGTTTTTGAATAAAACTTTGATGTC
CAATATCTTTAGAGCCTTATTGTCGATAAAGTTTCTTGCTTTAGACACCC
GTCACTTTGATCAATGGCCTCAGCATAAATACACCTTTTCAACCGTAGCC
CCCAATTGCCGCGCGGACGTTTTTTTGTCCAATTTACCACGCTAAAACCG
TCCCAGTCTTTTTTCCGCACCTATAGAGAAGGATTGGATCGAGTTTTGGG
AGGTAATGAAACATGCACCTAACCACGCAACTATGGCCGAAAAGATCTAT
TGACAAAAAAAAGCAGCGTGATTCGTGATATAATTTAGGCTATTCTTTGC
AGGCTGAATATGATGATTGCATCGATGATGATTGTCACCATGGTGACAAA
GAATTCTGAGTGATGGTGGTAAGAGCGTGGTTGTCGTGGAAAAGCTACCT
GGAGCTATGCTTCGGGAGACAAACAATCCGGAAATTTTGAACATAACTAA
AGTATCAATCTCGATAGAGCCATGCTAGTTACACAATATTTTGATTTAAT
ACAGTGTACTGTGATGGGTTGAGCTTTATGAGCCTTTTGTGAGCGCTATT
AGAATCAAGGAGGTGAACTGATGGAATTGATATAAATGACGAAAACGGAA
GTATAACCGCTTTCATTGGACATTAAAAAAGAGAAACACGAAGACCGTTC
AAGGGCCGTCCTAAGGTCAAGGCTCAGTTTGCATTTAATATTTCACCATA
CCAATGATAAACGTTTTCATTTTAAAAACAGACTACTATTACGTCATAAA
CCTTTTATATGTTCAACAAGTTTTTTTTTTTAATTACTCAGCTTTTTTCT
TGATGTTTTGTGTTGTAACAAGATCATCAATCTTAAGTAAAAGATTTCTC
GGAAAAAGTCAGCAGGATAACGCTAGACAACTAAAAGTAGATTGTGTCGG
GGTAGTGTTTGTAACACACTGTGACAAGTGGTTCGAATGAAATAGAAGTA
GAAGCTGTGTAAGTCGTTATTCTTAATATGCGTAAGTCATTTTTCTAGCG
GAAACACCCGAAAAAAGCCGGGATTTGACCTCTCTCTGTTACTAAAAATA
GAAACACAGAGGTAAAAAACTGGCTTTTTTGGGTGCTCCCGTTAAAAAAT
ATGACGTCATCTTGACTTACGAATATCAAGAATTGTATTATTGTTAACCG
GTTACTTTTTTGAAGCGGGCTATGGCTTTTTGCGCAATGCAATTAGTTTT
TTTGCATGACGACGGGCCTACACTTCGCAGAGTTGCCCGTTGCTAGAAAA
ATTCAAATGAAAATGAACCTCTGCGTTGACATCATTTGCCTCATTTTTTT
AAAAACAATTTTTGATCTCTTTTTGCTTGTTTTTTTCTCGCTTTTTCCTC
TATTTTTTCTGGATAAAGCGCGAAAAATCAATCGAAGCTGAAGGATATGG
TTATCTAATACAATAATGGCCGTTTTTTCTGGCTGTACTGTGAAATAATT
GCTCTCGATCAACGTAACAACTTCACAAGCTCGGTTGTTACAATATTTCT
CAGTACAGTTCGTCTCGCTCACCGGTCATTATTGCATTTGAGTATTTTAG
TAATAGAAGATGACGGCATCCACCAGGTCCAGTAGCCTATATATATATTT
TACACTTTGCAAAATTTTACAATCGCACTTTTGATTAGCAACTCGCACTT
TAAAACTTTAACTCGTACTTTTGCACGCAGTCAACCTCGTCCCCATCATG
TATCCTCAAGGATTTATTTACGTTACTACTGATGATGGACGCGCTAGAGA
ATATATCAGGCGCTTTTACCTTCATGAAATCTACGATCGATTCTAAGAGC
CTTTTAAAAGATTACAATTATGAATCTTTTTCACTAAAAAATGGCTTTCC
CTCAATTTTTCGTGGATGTTATATTGGCGACGGGTGGGACATGGGCGCAG
AGTACTTTTTAACGCTCTATGTTGTAAAGAGGTCTGGGACCTCAAGGAAA
TTCCCCGAATTCGGAGGCGCATGCGCAAAAGCAAAGAAGGAAGTCATAAT
TAAGCGGGAGAAAATGAAAGTAGATTATTCATCATTTTTTTTATCAAGCC
AGTGGCAAAGGAATTTCTTTTCATTATATATAATTAGTTTTGTATGATTC
TTTGTGGCATATAATGGCTCATTAATCTCGTCATGATGAAATGCCGTCCT
CGCAAAAAAGTGAATGTTTTGTTTTGTTTCAAAATAAACATTTTACGTGA
TACGTGATTGAAGACACGATTCGTGACCGAATATCGAGAAAGTCAGAGAA
ATCAAACCTTAAATGTTAAATCAATATATAACTTTATAGATTGGTGATTG
GATTGGGTCAGTAGATAGATAGACTAAATTTTATCATTCTTTTTTTTCTG
ATACAGAGTGAACAGTATACCTACATTCGGTAGGGGGGGGGGTACTGGGG
TTGTGCTTGAGCTGGCGGTGCAGTGTGCCACCTGACTCTCAACCCTCTCA
CCTTGGGATTGCGATATTGGGACTAATTTGACCAATTTCTATCTTTCAGG
GCAAAAAGTGGAAGTTTTCCTATTTTTCCGACCTGGGACTGGGTGGTTGA
GAAGTTTGATTTTCATCCATCCATAGACCTTCTGTCCTGTATATAATTCT
GAAATGCCATGTCTAATTCCGCCTCCGGCATCATAGCAGCTATATGGTCC
AAATAAAATAAAACCTTCTGAATATAAGTTGTTTAAAAAAATCACTCTAT
TACTTGAGCCACTTTGCAGATCGGATAGTTGCTATGTTGGAATTAGACAA
GGTATGTCAGCATTACAAAAAGTTACCGTACTAACTGGTTATAATTATAA
TGGATGACATTCGTGCATTCATACTCGCCCATACTTCTGCCACAGCAAAT
GTCTTGATGTTTAGGGTGATGTTGATAAACCATTAGATGACGGTAGAAAA
TGGGCTTTATGAGCTTTTCAGCAGACATATTAAGGATGATGTCCAATAAC
TCATTCTGTCCAGGGAAAATCAACTTAACGTTACTTTTTATGTTTATCTG
TACATGTCTCCATCAACTCGCGATTAAATATTCACTGAAGTGGAAACCCT
CAAACATTGAGCGTGAAGCTCAAGCATTTCAACATGTTTCATGCAACTTT
TGAACAGTTCGTTGTTGGATTTTTGGGAAAAGTTTCCCTGATTTTCCTGT
TTTTTCCAGAAAATTTTCTGGATTTTCTGATTTTCAGAGAAAATTTTTCC
CCTGCTTTTCCAATTTTGGGAAAAGGTTTCACGGATCTGCTGATATTTTC
TACCAAAGGTCCTGGGGAGTTGAAAAATGAGCTTTCAGAAAGTTAAGTTG
ACCTAAGTCAACAGAAGATTCTTTTAAATAAACTATTAACCAGCATCTTT
TTATTTTCAAATAATATATAAAGAGCAGTTTAAAATTCTGGGAAGAAGTC
TTGCTTATGCTATATATAAATTGAAATTTCAATTAGATTTTTTATGTTAC
TTAAATTTCAACAGAAAGAAAAGGATGCAGAGAAGGGACCTGAGATTGTT
TCCATAATTAATTGTGACATTTTAAAAATGAAGCGTAAACCCAGTTTTCT
TTTCAAAAGTACAAGTATATACCTACTCTGCAACATGTCTGAAAAGGAAA
AATAGTTTGCTGGCTAAAAAAATAAATTTTTGTGGAACAAGTTTTTGCAG
AATTTCATTTCACGGTTTTTTGAAAAATCAGCAAAATTAAATTCCGTGAA
ACACAAATATTGTCAGGATTTCAAAAATCACCCCTAAAATTTGTCTTTTC
AGCAAAAAATAGGATTAAAAATTAAAAATTCCGCAAAACTTCTGAATTTA
GATTTTTGGTTATTCACAAATTTAAAGCTCATAAATTACAATAGAGGTGT
GATTCTTCACACAAAAATTTCTTCCCTTAACTCTTCGATCATCTTGTGCA
GGGAAACAAATTTTTAACTAACTTTTTAACTTTTGAAACATTTATCCAAT
TGACTTGAAATTTAGCAAGTGTGTACCAAATATGAAATGGCATCTTTGAT
GAAAATTTTGGCATATCATTGATGACGTCATCATTTTTTGAAAATAATTA
AAATCGGAACCCCATTTAACCTAGTAACTTGAATTTTTTTCGCTCAAATT
TTTTGAGGCAACTCCAGGTGACATAAATTTTTTTTTAATTGCAAAATTTC
GCATTTTAATTATTTCTGCTGACATCAGCAAAATTAAAAAAAAAATTTAT
GCAGAAATGTTTCTATTAAAGATATGCAGATTTGGATTTCATATTTATAC
CATCAGCCAAACTTGAGTTATTAAAAAAACAAGTTTTGCTGACGTCATCA
TTTTTTGGTTTTTGCCTAATAACTTTTTTGGGTGAAAAAATTAATTTTAT
TAACAGTGATTTCTGAATTCTACATCGTAATACGCTTCTTTAAAGGTATA
AATGAATATGTCTAAGGCCCCCAATTTTCTGCGCCAAACTTATGGCTTTT
GGGACATGCCATAAGTTACCAGAGGTGTAATTTACAGACTGGTCTGCAAA
GTATCAAATACTCATGGGAACGAATTTTTTCTGTTACTAGTCTCTTTTAT
TTGACAAAACAGCCTTCAGGAACAGATTTCAGTCAAATTGAACAAGTCAA
TTAAATGATTTTGGTCAAGTTTTGCAAATCAACTTCAGTTATCCATATCT
ACTGGTCAAAATTTCAAGGTCATAGCAGTTGTCAATCTTGAGATTTTAAG
GGGGAGCTCGAGCCCCCCCCCAAAAATGCTTTCCCTCCAATTAAAAAAAT
AGGAAGATGCTTGAAGGGTTAAGGTATCCCTCAAATACCTCAAATGCTTG
CACACATTTTGTTACTTTTTTTCCGAAACCTAAACTTCCATAAAAATTTG
ATTCAAAACTTACTCAAAAACATTTTTAGGGAAATGGTGTGACGCTTATT
GATTATCTTACCAAGCAACACCCAATAATAAAGTTTTATTGAATCTCAAC
AAATTTTTGGATGTTTACATTTTTAATTTTAACTTTAGCACGATAAAATG
ATACTGAAGGACACTACTGGCTGCTGAGTCATGAAATATTTGCATTTGTG
ATTAATTCTTTAGGAAGATAATGCCAGCAATACTACTGAGGAGACCAATA
TGGACACTGATTTTGTACCGCTCATAAGTTCGTATTTAAAGTCAGAAGAA
TTCGATCCTTGTTCTTTTCAGCAGCAGTTGAATCTTCCAAATGCCGGTGG
GTATAATAACAGCACCACCAGTGGTGGTGGCGGTGGTGGTGNA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057480-exon-scaffold_289-1575043694:308586..308632 | TCONS_00057480-exon-scaffold_289-1575043694:308586..308632 | Clytia hemisphaerica | exon |
| TCONS_00057480-exon-scaffold_289-1575043694:301440..301619 | TCONS_00057480-exon-scaffold_289-1575043694:301440..301619 | Clytia hemisphaerica | exon |
| TCONS_00057480-exon-scaffold_289-1510915933:308586..308632 | TCONS_00057480-exon-scaffold_289-1510915933:308586..308632 | Clytia hemisphaerica | exon |
| TCONS_00057480-exon-scaffold_289-1510915933:301440..301619 | TCONS_00057480-exon-scaffold_289-1510915933:301440..301619 | Clytia hemisphaerica | exon |
| TCONS_00057480-exon-scaffold_289-1491911889:308586..308632 | TCONS_00057480-exon-scaffold_289-1491911889:308586..308632 | Clytia hemisphaerica | exon |
| TCONS_00057480-exon-scaffold_289-1491911889:301440..301619 | TCONS_00057480-exon-scaffold_289-1491911889:301440..301619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:301440..308632 - |
Blast
The following BLAST results are available for this feature:
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