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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057483 ID=TCONS_00057483|Name=TCONS_00057483|organism=Clytia hemisphaerica|type=transcript|length=1108bp
gcgtgtactccCAAAAATAAGGTACTTTGGAAAGTAATATACAATAAGCG
ATAAGGTTCAAATAGgataagaacttttttaggctcaaaactcaaaacat
caaaaaatttagatgttcttgtaaaaaaacgtgtagccccATGACTAGTG
TATCCTAAGTATAACAAAGTTTATAttggccgtctaaactagagctttcT
TCGTCATGCCACTGCATTTTCAATCCATTCCTTCAACAAGAAATGCaatt
acaaatttgaaaaatttcttttgatcgACGTCGACGTtagaataagaatt
ttcaaaatcgtTTGATTTATCCTTGTCAATAAGATTTTCTGCCAAAACTT
GTGGTAATAATTGATCGCGAGAAAATTCAAAGTTGAAGTCAGGGTGTCCT
TGGCAAGAAATGATGTTGGGTGACCAACGGATTATCTCATGTTTGCAATT
TTTGGATGATCCGAGAATTTCAAACTCCGTTGACAAAGACTCAATCTCCT
CCACGTGGCATTCCATAACGAGAACAGTTTCCTGGGTATCAAAATATTCA
TTATACAATTCGTTCTGTtggaactttttagaaatatgaaCTGTCTCTCC
ACCGAACTGTACTGTCTTTGTATCCACCACGTTGAAACCAAGAACTTTTG
CAATCATTTGATGTCCAAAACAAATCCCAAAGATTCGTATGTGTccaatt
ttaaaacattttcggACAAATTTGGACAATTCTTGTACCCAAAAGGTGTC
CTTGTTCACACTGTGAGATGAACCCGTCAATAAAAATCCACAGTATTCGT
CAAAGTTGATTTGACCAAGGATAGAAGGATTCTCGGAAACAAACAAAGGC
TCGTATTGGATTTTGTAGGAACCAATGTTTGGGATTTCATCGCATCTAGG
CTTGTGGCAATTCTCCCACCAAAAATGTCCTTGACGTAATTCAGCTTTTT
TGTCATCTTCGTAGAGTAAGACGCCAATTTTCTTGTGACAAGACATTGTG
CCGAAAATGAACGATAGTGTCGATCGACCATACGATGTTAAATAACTTGC
TCGCTAGAGTAAAAGCAAAAACGTGGTTGCTGTAATCAGAGAAATGATGC
AAGATGAC Run BLAST on NCBI protein sequence of TCONS_00057483-protein >TCONS_00057483-protein ID=TCONS_00057483-protein|Name=TCONS_00057483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MSCHKKIGVLLYEDDKKAELRQGHFWWENCHKPRCDEIPNIGSYKIQYEP
LFVSENPSILGQINFDEYCGFLLTGSSHSVNKDTFWVQELSKFVRKCFKI
GHIRIFGICFGHQMIAKVLGFNVVDTKTVQFGGETVHISKKFQQNELYNE
YFDTQETVLVMECHVEEIESLSTEFEILGSSKNCKHEIIRWSPNIISCQG
HPDFNFEFSRDQLLPQVLAENLIDKDKSNDFENSYSNVDVDQKKFFKFVI
AFLVEGMD Run BLAST on NCBI transcript from alignment at scaffold_289:8208..9315 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057483 ID=TCONS_00057483|Name=TCONS_00057483|organism=Clytia hemisphaerica|type=transcript|length=1108bp|location=Sequence derived from alignment at scaffold_289:8208..9315 (Clytia hemisphaerica)
GTCATCTTGCATCATTTCTCTGATTACAGCAACCACGTTTTTGCTTTTAC
TCTAGCGAGCAAGTTATTTAACATCGTATGGTCGATCGACACTATCGTTC
ATTTTCGGCACAATGTCTTGTCACAAGAAAATTGGCGTCTTACTCTACGA
AGATGACAAAAAAGCTGAATTACGTCAAGGACATTTTTGGTGGGAGAATT
GCCACAAGCCTAGATGCGATGAAATCCCAAACATTGGTTCCTACAAAATC
CAATACGAGCCTTTGTTTGTTTCCGAGAATCCTTCTATCCTTGGTCAAAT
CAACTTTGACGAATACTGTGGATTTTTATTGACGGGTTCATCTCACAGTG
TGAACAAGGACACCTTTTGGGTACAAGAATTGTCCAAATTTGTccgaaaa
tgttttaaaattggACACATACGAATCTTTGGGATTTGTTTTGGACATCA
AATGATTGCAAAAGTTCTTGGTTTCAACGTGGTGGATACAAAGACAGTAC
AGTTCGGTGGAGAGACAGttcatatttctaaaaagttccaACAGAACGAA
TTGTATAATGAATATTTTGATACCCAGGAAACTGTTCTCGTTATGGAATG
CCACGTGGAGGAGATTGAGTCTTTGTCAACGGAGTTTGAAATTCTCGGAT
CATCCAAAAATTGCAAACATGAGATAATCCGTTGGTCACCCAACATCATT
TCTTGCCAAGGACACCCTGACTTCAACTTTGAATTTTCTCGCGATCAATT
ATTACCACAAGTTTTGGCAGAAAATCTTATTGACAAGGATAAATCAAacg
attttgaaaattcttattctaACGTCGACGTcgatcaaaagaaatttttc
aaatttgtaattGCATTTCTTGTTGAAGGAATGGATTGAAAATGCAGTGG
CATGACGAAgaaagctctagtttagacggccaaTATAAACTTTGTTATAC
TTAGGATACACTAGTCATggggctacacgtttttttacaagaacatctaa
attttttgatgttttgagttttgagcctaaaaaagttcttatcCTATTTG
AACCTTATCGCTTATTGTATATTACTTTCCAAAGTACCTTATTTTTGgga
gtacacgc Coding sequence (CDS) from alignment at scaffold_289:8208..9315 >TCONS_00057483 ID=TCONS_00057483|Name=TCONS_00057483|organism=Clytia hemisphaerica|type=CDS|length=777bp|location=Sequence derived from alignment at scaffold_289:8208..9315 (Clytia hemisphaerica)
ATGTCTTGTCACAAGAAAATTGGCGTCTTACTCTACGAAGATGACAAAAA
AGCTGAATTACGTCAAGGACATTTTTGGTGGGAGAATTGCCACAAGCCTA
GATGCGATGAAATCCCAAACATTGGTTCCTACAAAATCCAATACGAGCCT
TTGTTTGTTTCCGAGAATCCTTCTATCCTTGGTCAAATCAACTTTGACGA
ATACTGTGGATTTTTATTGACGGGTTCATCTCACAGTGTGAACAAGGACA
CCTTTTGGGTACAAGAATTGTCCAAATTTGTccgaaaatgttttaaaatt
ggACACATACGAATCTTTGGGATTTGTTTTGGACATCAAATGATTGCAAA
AGTTCTTGGTTTCAACGTGGTGGATACAAAGACAGTACAGTTCGGTGGAG
AGACAGttcatatttctaaaaagttccaACAGAACGAATTGTATAATGAA
TATTTTGATACCCAGGAAACTGTTCTCGTTATGGAATGCCACGTGGAGGA
GATTGAGTCTTTGTCAACGGAGTTTGAAATTCTCGGATCATCCAAAAATT
GCAAACATGAGATAATCCGTTGGTCACCCAACATCATTTCTTGCCAAGGA
CACCCTGACTTCAACTTTGAATTTTCTCGCGATCAATTATTACCACAAGT
TTTGGCAGAAAATCTTATTGACAAGGATAAATCAAacgattttgaaaatt
cttattctaACGTCGACGTcgatcaaaagaaatttttcaaatttgtaatt
GCATTTCTTGTTGAAGGAATGGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057483-exon-scaffold_289-1491911889:8208..9315 | TCONS_00057483-exon-scaffold_289-1491911889:8208..9315 | Clytia hemisphaerica | exon |
| TCONS_00057483-exon-scaffold_289-1510915933:8208..9315 | TCONS_00057483-exon-scaffold_289-1510915933:8208..9315 | Clytia hemisphaerica | exon |
| TCONS_00057483-exon-scaffold_289-1575043694:8208..9315 | TCONS_00057483-exon-scaffold_289-1575043694:8208..9315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:8208..9315 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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