TCONS_00057489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057489
Unique NameTCONS_00057489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057489 ID=TCONS_00057489|Name=TCONS_00057489|organism=Clytia hemisphaerica|type=transcript|length=594bp
AAAATAGGTATTTTGAGGAAGTTGAATGAGAAATGAAGATTAGTGTTAAA
GATTTCCTTGTCCTATAGAAATGTAATATTTTAACAATGAGCTGACGATT
CACTTTATTTATGTGCCTGCCTCTCTATTGACACTGAGATTCGAAAGCGA
CGTCGTAATAATAGAAGCGACATGTCGTCATAATACAACCATGTCCTtct
tttttatatagtttgatACAATTTTGAAGCAAACTTGAAGCTAAAATCAA
TCTAAGTTTAAGGATTATTTAGAACAATACCAATCTTTAACAATCTTTTC
CATTTGCTTGATAATTCGAGATTATGCAACCATTATAATACTCCCTTTTT
ACTTGTCATTATTACTACAGTACTACAAAATCCGTAGTAGATATACCAAA
TTCCACAATTAGTTGGCCATATACATAATGTAACTTTACTTGTATGTGTA
GAGTGAAGTTCGAGGTGAATGAAGCTTCCTTGTTCCGTGTGTGtgtgttt
tcaatgaaattgcGTTTTTCACCACATACACGCTTTTCAAACATGCCTCT
CACTGGTGGGATGGTAACCCAGctggcatacaacgttgtttcaa
Run BLAST on NCBI

transcript from alignment at scaffold_289:111383..111976

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057489 ID=TCONS_00057489|Name=TCONS_00057489|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at scaffold_289:111383..111976 (Clytia hemisphaerica)
ttgaaacaacgttgtatgccagCTGGGTTACCATCCCACCAGTGAGAGGC
ATGTTTGAAAAGCGTGTATGTGGTGAAAAACgcaatttcattgaaaacac
aCACACACGGAACAAGGAAGCTTCATTCACCTCGAACTTCACTCTACACA
TACAAGTAAAGTTACATTATGTATATGGCCAACTAATTGTGGAATTTGGT
ATATCTACTACGGATTTTGTAGTACTGTAGTAATAATGACAAGTAAAAAG
GGAGTATTATAATGGTTGCATAATCTCGAATTATCAAGCAAATGGAAAAG
ATTGTTAAAGATTGGTATTGTTCTAAATAATCCTTAAACTTAGATTGATT
TTAGCTTCAAGTTTGCTTCAAAATTGTatcaaactatataaaaaagaAGG
ACATGGTTGTATTATGACGACATGTCGCTTCTATTATTACGACGTCGCTT
TCGAATCTCAGTGTCAATAGAGAGGCAGGCACATAAATAAAGTGAATCGT
CAGCTCATTGTTAAAATATTACATTTCTATAGGACAAGGAAATCTTTAAC
ACTAATCTTCATTTCTCATTCAACTTCCTCAAAATACCTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036230XLOC_036230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057489-exon-scaffold_289-1491911889:111383..111976TCONS_00057489-exon-scaffold_289-1491911889:111383..111976Clytia hemisphaericaexon
TCONS_00057489-exon-scaffold_289-1510915933:111383..111976TCONS_00057489-exon-scaffold_289-1510915933:111383..111976Clytia hemisphaericaexon
TCONS_00057489-exon-scaffold_289-1575043694:111383..111976TCONS_00057489-exon-scaffold_289-1575043694:111383..111976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:111383..111976 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0898607	0	0.102077	0	0.0981993	0	0	0	0.0961858	0.186721	0.0613714	0.245144	0.127292	0.470932	0.168461	0	0.425423	0.195915	0.307516	0.178192	0.260747	0.105657	0.192116	0.395749	0.264898	0.252712	0.13485	0.102279	0.104206
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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