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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057493 ID=TCONS_00057493|Name=TCONS_00057493|organism=Clytia hemisphaerica|type=transcript|length=1198bp
TGATCCTAAAAGTCTCCGtatatataaattttgaaatatttcgaaaataC
TGGAAATAAgtgttaaaaatgaagaaattccaAATGTGATAATGCAATGA
GATATCAGAATCTCAAGTAATTATTGGCTGGTAAATGATACAGCACAAAT
AATGattgtcattttcatcatcttcATCGTTATCACTACTATCCAAATGC
TCTTTGTCATTTTCACCATTGTTTAACATTTTAAAATCAGGCTCTTTATG
ATTCTCGCATTCTTTACAACCACAAAATTCAGTGCAGTCAACTTCAGCTT
CTTTACAGGGGCATTTCTTGTTAATACATGTTGAAGATGCACATTTGCAG
CGGCGGTTATCTGCAGAATCTCTTCTGGAGCAACATCGACACCGTCTGGA
AGCATGGTCGGCGTCAACGACACTCCATCTTCACGTTTCTCATAGTCATA
GTCACAAGGATTCAGGTCTGGGGGGTTGCCACTGACACAATTTTTCCCCA
TGATTGCAACAAAATACCCTCTCAATTCGAGAGCTTCGTCGGTTGGTGGC
AAATATTTGAGTGCGGGTGTTTTGGTTGACTTCTTCGAACCATCAGTCTT
GCTCACCCAGATGTTACGTCTATTTGTAGATGAAGATTCGTGAGTTTGGC
CATAACACTTTGCCACAAACTGCTTTCCTTCTTTGACAACCAATTTTATT
GGAGAGTTGATGTCATCAATATGCAAAAGAGGGACTTTCTTAGCAGCGTT
GATTGCTTTTGATTTTCCAATATTGAACAGCATCGGGACTGTATCACAAC
CAGAGAGTGCTTGGAGTGCAATTAGATGTTGGGTAAGATTTCCGCTACGT
TTAACCGAATTGTTGATgttaataattttgttttcttttgtgaATGGATC
CATGTAGATCTTCGAAGACCACTTTCTCTCAAAGAAATGACCACATAGAA
GAATGAAAACATCTGTGTCTGCACTTAAAACTTTGATCACCTTTTTCTCT
TCATTATTGATGCAGTCAATTTGTTGGGGTATTATGTAGTCGGCTTCATA
GTAGTACGAAGTCAAATCGTGACGTTTGATGCGGACACCTTTAAAAACCT
GCATAggaaaggaaataaaaaatacattcTGGAATAATTAATAGACAAAA
TATTTGTAACTCAATCGTTTTAATGTTATGACTAGTCCAGTGTGCCCG Run BLAST on NCBI protein sequence of TCONS_00057493-protein >TCONS_00057493-protein ID=TCONS_00057493-protein|Name=TCONS_00057493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MQVFKGVRIKRHDLTSYYYEADYIIPQQIDCINNEEKKVIKVLSADTDVF
ILLCGHFFERKWSSKIYMDPFTKENKIININNSVKRSGNLTQHLIALQAL
SGCDTVPMLFNIGKSKAINAAKKVPLLHIDDINSPIKLVVKEGKQFVAKC
YGQTHESSSTNRRNIWVSKTDGSKKSTKTPALKYLPPTDEALELRGYFVA
IMGKNCVSGNPPDLNPCDYDYEKREDGVSLTPTMLPDGVDVAPEEILQIT
AAANVHLQHVLTRNAPVKKLKLTALNFVVVKNARIIKSLILKC Run BLAST on NCBI transcript from alignment at scaffold_289:246268..247465 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057493 ID=TCONS_00057493|Name=TCONS_00057493|organism=Clytia hemisphaerica|type=transcript|length=1198bp|location=Sequence derived from alignment at scaffold_289:246268..247465 (Clytia hemisphaerica)
CGGGCACACTGGACTAGTCATAACATTAAAACGATTGAGTTACAAATATT
TTGTCTATTAATTATTCCAgaatgtattttttatttcctttccTATGCAG
GTTTTTAAAGGTGTCCGCATCAAACGTCACGATTTGACTTCGTACTACTA
TGAAGCCGACTACATAATACCCCAACAAATTGACTGCATCAATAATGAAG
AGAAAAAGGTGATCAAAGTTTTAAGTGCAGACACAGATGTTTTCATTCTT
CTATGTGGTCATTTCTTTGAGAGAAAGTGGTCTTCGAAGATCTACATGGA
TCCATtcacaaaagaaaacaaaattattaacATCAACAATTCGGTTAAAC
GTAGCGGAAATCTTACCCAACATCTAATTGCACTCCAAGCACTCTCTGGT
TGTGATACAGTCCCGATGCTGTTCAATATTGGAAAATCAAAAGCAATCAA
CGCTGCTAAGAAAGTCCCTCTTTTGCATATTGATGACATCAACTCTCCAA
TAAAATTGGTTGTCAAAGAAGGAAAGCAGTTTGTGGCAAAGTGTTATGGC
CAAACTCACGAATCTTCATCTACAAATAGACGTAACATCTGGGTGAGCAA
GACTGATGGTTCGAAGAAGTCAACCAAAACACCCGCACTCAAATATTTGC
CACCAACCGACGAAGCTCTCGAATTGAGAGGGTATTTTGTTGCAATCATG
GGGAAAAATTGTGTCAGTGGCAACCCCCCAGACCTGAATCCTTGTGACTA
TGACTATGAGAAACGTGAAGATGGAGTGTCGTTGACGCCGACCATGCTTC
CAGACGGTGTCGATGTTGCTCCAGAAGAGATTCTGCAGATAACCGCCGCT
GCAAATGTGCATCTTCAACATGTATTAACAAGAAATGCCCCTGTAAAGAA
GCTGAAGTTGACTGCACTGAATTTTGTGGTTGTAAAGAATGCGAGAATCA
TAAAGAGCCTGATTTTAAAATGTTAAACAATGGTGAAAATGACAAAGAGC
ATTTGGATAGTAGTGATAACGATgaagatgatgaaaatgacaatCATTAT
TTGTGCTGTATCATTTACCAGCCAATAATTACTTGAGATTCTGATATCTC
ATTGCATTATCACATTtggaatttcttcatttttaacacTTATTTCCAGt
attttcgaaatatttcaaaatttatatataCGGAGACTTTTAGGATCA Coding sequence (CDS) from alignment at scaffold_289:246268..247465 >TCONS_00057493 ID=TCONS_00057493|Name=TCONS_00057493|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_289:246268..247465 (Clytia hemisphaerica)
ATGCAGGTTTTTAAAGGTGTCCGCATCAAACGTCACGATTTGACTTCGTA
CTACTATGAAGCCGACTACATAATACCCCAACAAATTGACTGCATCAATA
ATGAAGAGAAAAAGGTGATCAAAGTTTTAAGTGCAGACACAGATGTTTTC
ATTCTTCTATGTGGTCATTTCTTTGAGAGAAAGTGGTCTTCGAAGATCTA
CATGGATCCATtcacaaaagaaaacaaaattattaacATCAACAATTCGG
TTAAACGTAGCGGAAATCTTACCCAACATCTAATTGCACTCCAAGCACTC
TCTGGTTGTGATACAGTCCCGATGCTGTTCAATATTGGAAAATCAAAAGC
AATCAACGCTGCTAAGAAAGTCCCTCTTTTGCATATTGATGACATCAACT
CTCCAATAAAATTGGTTGTCAAAGAAGGAAAGCAGTTTGTGGCAAAGTGT
TATGGCCAAACTCACGAATCTTCATCTACAAATAGACGTAACATCTGGGT
GAGCAAGACTGATGGTTCGAAGAAGTCAACCAAAACACCCGCACTCAAAT
ATTTGCCACCAACCGACGAAGCTCTCGAATTGAGAGGGTATTTTGTTGCA
ATCATGGGGAAAAATTGTGTCAGTGGCAACCCCCCAGACCTGAATCCTTG
TGACTATGACTATGAGAAACGTGAAGATGGAGTGTCGTTGACGCCGACCA
TGCTTCCAGACGGTGTCGATGTTGCTCCAGAAGAGATTCTGCAGATAACC
GCCGCTGCAAATGTGCATCTTCAACATGTATTAACAAGAAATGCCCCTGT
AAAGAAGCTGAAGTTGACTGCACTGAATTTTGTGGTTGTAAAGAATGCGA
GAATCATAAAGAGCCTGATTTTAAAATGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057493-exon-scaffold_289-1491911889:246268..247465 | TCONS_00057493-exon-scaffold_289-1491911889:246268..247465 | Clytia hemisphaerica | exon |
| TCONS_00057493-exon-scaffold_289-1510915933:246268..247465 | TCONS_00057493-exon-scaffold_289-1510915933:246268..247465 | Clytia hemisphaerica | exon |
| TCONS_00057493-exon-scaffold_289-1575043694:246268..247465 | TCONS_00057493-exon-scaffold_289-1575043694:246268..247465 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:246268..247465 . |
Blast
The following BLAST results are available for this feature:
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